Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7KPW	22990	2025-02-11	2020-11-12	4.9	5.04	4.74	4.9	0.009	1.54	4.0	0.10	1.89	0.01	2.279	3.61	0.00	3.9	94.9	1.2	4.09	0.75	0.67	—	4.9	0.003	0.69	0.0	0.04	4.95	0.00	2.464	0.66	0.00	11.4	88.2	0.5	0.76	2.01	0.82	0.81	—	4313	865	1	0	0	0	0	logfile
✔	8EXQ	28659	2025-02-13	2022-10-25	4.9	5.40	5.55	6.0	0.020	1.74	0.0	0.10	10.28	0.01	2.002	1.81	0.00	2.5	97.3	0.2	0.34	0.52	0.45	—	6.0	0.003	0.73	0.0	0.04	12.88	0.00	2.544	15.16	0.00	3.7	96.3	0.0	-0.63	2.50	0.57	0.62	—	9304	1108	4	0	2	0	0	logfile
✔	8HiA	34813	2025-02-12	2022-11-19	4.9	4.49	2.13	9.6	0.001	0.36	0.0	0.05	15.83	0.00	2.251	1.11	2.86	12.1	87.6	0.2	-4.39	0.47	0.07	—	9.4	0.010	1.21	0.0	0.06	13.75	0.03	1.994	43.61	4.76	14.3	85.7	0.0	-5.76	11.82	0.69	0.27	—	7200	460	20	0	0	0	3660	logfile
✔	6R23	4708	2025-02-10	2019-03-15	4.9	4.57	—	4.6	0.006	1.07	0.0	0.05	16.56	0.01	2.332	7.52	0.00	7.9	92.1	0.0	-4.61	0.60	0.75	—	4.6	0.003	0.65	0.0	0.04	16.48	0.00	2.600	7.52	0.00	7.9	92.1	0.0	0.50	3.42	0.60	0.73	—	1518	182	2	0	0	0	0	logfile
✔	6VAB	21135	2025-02-11	2019-12-17	4.9	6.51	—	6.8	0.005	0.91	0.0	0.06	8.70	0.01	2.264	14.98	0.00	6.8	93.2	0.0	-3.84	0.71	0.69	—	6.6	0.009	0.99	0.0	0.05	7.45	0.01	2.268	13.79	0.00	13.3	86.6	0.1	-2.99	3.04	0.74	0.69	—	4642	938	4	0	0	0	0	logfile
✘	6UXB	20932	2025-02-14	2019-11-07	4.9	5.50	—	6.0	0.005	0.77	0.0	0.06	4.56	0.00	2.627	0.00	0.00	3.8	96.2	0.0	-2.56	0.74	0.69	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10344	2104	8	0	0	0	0	logfile
✔	8ZiP	60125	2025-02-13	2024-05-14	4.9	4.46	4.61	4.2	0.006	0.69	0.0	0.05	14.31	0.00	1.384	15.27	0.00	6.7	93.3	0.0	-3.13	0.84	0.72	—	4.2	0.003	0.70	0.0	0.04	14.39	0.00	2.393	11.78	0.00	4.1	95.9	0.0	0.41	1.14	0.86	0.76	—	8662	1084	3	0	1	0	0	logfile
✔	9EPR	19884	2025-02-12	2024-03-19	4.9	4.87	4.71	4.7	0.004	0.93	0.0	0.05	17.43	0.01	2.296	13.12	14.42	7.8	91.8	0.5	-3.94	0.67	0.73	—	4.7	0.003	0.73	0.0	0.04	12.72	0.00	2.502	12.91	0.00	5.7	94.3	0.0	-1.13	3.80	0.66	0.72	—	7046	890	5	0	1	0	0	logfile
✔	8RBG	19031	2025-02-11	2023-12-04	4.9	5.29	4.93	5.0	0.013	1.92	5.0	0.11	12.43	0.02	1.819	10.03	0.62	2.7	97.0	0.3	0.61	0.78	0.66	—	5.0	0.003	0.69	0.0	0.04	13.84	0.00	1.988	14.63	0.00	3.0	97.0	0.0	0.72	1.28	0.83	0.80	—	6008	737	2	0	3	0	0	logfile
✔	7S0E	24788	2025-02-12	2021-08-30	4.9	4.98	—	4.8	0.004	0.87	0.0	0.05	13.44	0.01	1.886	21.60	1.22	8.1	91.3	0.7	-1.76	0.77	0.67	—	4.8	0.003	0.78	0.0	0.05	12.94	0.01	2.382	15.82	0.00	9.0	90.8	0.2	-1.99	1.16	0.78	0.72	—	8248	1076	3	0	0	0	0	logfile
✔	6SKM	10228	2025-02-14	2019-08-16	4.9	5.09	4.66	4.9	0.004	0.64	0.0	0.04	9.23	0.00	1.449	9.83	0.18	1.4	98.6	0.0	-1.03	0.68	0.74	—	4.9	0.004	0.80	0.0	0.05	13.17	0.01	2.332	18.44	0.09	3.2	96.8	0.0	-0.17	1.75	0.70	0.81	—	10336	1320	6	0	0	0	0	logfile
✔	6PoM	20416	2025-02-11	2019-07-04	4.9	5.01	—	5.0	0.003	0.64	0.0	0.03	25.63	0.00	2.075	3.10	0.00	0.0	0.0	0.0	—	0.61	0.64	—	5.0	0.006	0.94	0.0	0.05	26.62	0.01	1.998	32.05	0.00	0.0	0.0	0.0	—	1.73	0.75	0.79	—	4937	0	2	230	0	0	0	logfile
✔	7P2Q	13172	2025-02-11	2021-07-06	4.9	4.54	—	4.3	0.004	0.84	0.0	0.05	11.11	0.01	2.264	4.17	0.00	5.0	95.0	0.0	-3.09	0.77	0.72	—	4.2	0.003	0.80	0.0	0.04	12.63	0.00	2.391	10.44	0.00	5.4	94.6	0.0	-0.60	1.58	0.80	0.74	—	4780	587	5	0	5	0	0	logfile
✔	7P2P	13171	2025-02-11	2021-07-06	4.9	4.40	5.09	4.3	0.005	1.10	0.0	0.07	13.15	0.01	2.325	4.27	0.19	8.1	91.9	0.0	-3.94	0.76	0.66	—	4.2	0.003	0.81	0.0	0.05	12.76	0.01	2.450	13.12	0.19	7.8	92.2	0.0	-1.48	1.05	0.78	0.72	—	4783	587	5	0	5	0	0	logfile
✘	8H3S	32829	2025-02-12	2022-10-09	4.9	4.75	—	7.3	0.002	0.44	0.0	0.04	9.51	0.00	2.202	10.15	2.76	7.4	92.6	0.0	-4.26	0.85	0.64	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6901	888	3	0	0	0	0	logfile
✔	8oSH	17153	2025-02-11	2023-04-18	4.9	5.59	5.45	4.9	0.006	0.94	0.0	0.06	3.38	0.00	2.299	5.83	0.00	11.2	88.7	0.1	-0.55	0.82	0.82	—	4.9	0.003	0.63	0.0	0.04	4.67	0.00	2.430	3.48	0.00	12.7	87.2	0.1	-1.18	0.53	0.83	0.85	—	6770	1372	5	0	0	0	0	logfile
✔	6PWC	20505	2025-02-11	2019-07-22	4.9	5.55	—	4.5	0.003	0.67	0.0	0.05	4.68	0.01	2.345	2.19	0.00	1.3	98.7	0.0	-0.09	0.61	0.67	—	4.6	0.003	0.68	0.0	0.04	5.97	0.00	2.484	8.45	0.00	5.4	94.6	0.0	-0.01	2.39	0.61	0.57	—	5879	1055	5	0	0	0	0	logfile
✔	7K9L	22754	2025-02-14	2020-09-29	4.9	4.39	—	4.7	0.007	1.19	0.0	0.07	15.28	0.01	2.254	9.45	3.96	3.5	96.5	0.0	-1.98	0.67	0.78	—	4.6	0.004	0.74	0.0	0.04	13.68	0.00	2.525	16.66	0.00	4.1	95.9	0.0	-0.01	0.96	0.69	0.78	—	10472	1372	4	0	0	0	0	logfile
✔	8EJ5	28176	2025-02-11	2022-09-16	4.9	4.58	4.63	4.6	0.012	1.52	1.0	0.09	12.69	0.01	2.466	13.82	3.27	2.0	97.2	0.8	1.40	0.43	0.64	—	4.5	0.003	0.79	0.0	0.05	14.30	0.00	2.353	13.29	0.00	3.5	96.2	0.3	-0.13	1.89	0.46	0.75	—	5818	727	4	0	0	0	0	logfile
✔	7PD4	13330	2025-02-11	2021-08-04	4.9	4.13	—	7.8	0.005	0.87	0.0	0.05	14.59	0.00	2.035	38.59	0.00	11.7	88.3	0.0	-4.80	0.73	0.72	—	7.8	0.006	0.94	0.0	0.05	13.51	0.01	2.321	27.07	0.00	6.5	93.5	0.0	-1.67	1.27	0.74	0.74	—	6676	842	1	0	0	0	0	logfile

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