Table showing results for February 2025

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peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7JSH	22454	2025-02-12	2020-08-14	4.4	7.07	—	17.0	0.001	0.20	0.0	0.02	8.81	0.00	2.581	0.00	0.00	13.1	83.7	3.2	-3.27	0.49	0.25	—	5.3	0.007	1.51	0.0	0.06	14.49	0.01	2.198	18.51	0.00	30.2	69.4	0.4	-5.64	6.11	0.72	0.66	—	7916	1904	8	15	0	0	0	logfile
✔	7RX5	24725	2025-02-13	2021-08-21	3.4	3.65	—	3.6	0.002	0.25	0.0	0.03	11.98	0.00	2.288	5.05	0.00	0.0	100.0	0.0	4.54	0.70	0.85	3.58	3.6	0.002	0.32	0.0	0.03	12.78	0.00	2.693	2.28	0.00	0.0	100.0	0.0	5.58	0.18	0.70	0.87	2.85	9120	1160	40	0	0	0	0	logfile
✔	8K1V	36805	2025-02-11	2023-07-11	3.48	3.80	3.32	3.9	0.001	0.31	0.0	0.03	13.71	0.00	2.283	2.43	0.00	0.6	99.4	0.0	5.96	0.54	0.76	1.54	3.9	0.003	0.57	0.0	0.04	14.71	0.00	2.498	4.74	2.45	1.7	98.3	0.0	4.74	0.75	0.54	0.79	2.29	4059	484	6	0	11	2	0	logfile
✔	7RZT	24777	2025-02-10	2021-08-27	2.35	2.27	—	2.1	0.005	0.32	0.0	0.03	14.89	0.00	2.388	3.83	0.00	2.9	97.1	0.0	2.81	0.77	0.79	2.62	2.0	0.004	0.36	0.0	0.03	15.45	0.00	2.447	4.84	0.00	0.3	99.7	0.0	5.95	0.25	0.80	0.83	2.98	2451	324	6	0	0	0	0	logfile
✔	8CZi	27098	2025-02-10	2022-05-24	2.22	2.26	2.61	2.0	0.004	0.33	0.0	0.03	14.48	0.00	2.382	6.62	0.00	0.0	100.0	0.0	2.90	0.78	0.80	1.97	2.0	0.003	0.38	0.0	0.03	15.17	0.00	2.440	4.09	1.68	0.0	100.0	0.0	5.65	0.84	0.82	0.84	1.88	2550	339	6	0	0	0	0	logfile
✔	7R9U	24331	2025-02-12	2021-06-29	4.4	5.41	—	4.3	0.002	0.34	0.0	0.04	4.36	0.00	2.248	3.50	0.00	9.1	90.3	0.6	-4.49	0.78	0.62	—	4.3	0.002	0.53	0.0	0.04	8.78	0.00	2.410	4.92	0.00	3.0	97.0	0.0	0.78	2.37	0.91	0.84	—	7727	505	1	0	0	0	3939	logfile
✔	8K1J	36793	2025-02-11	2023-07-11	3.0	3.30	3.06	3.4	0.001	0.34	0.0	0.03	13.84	0.00	2.296	2.67	0.00	0.4	99.6	0.0	5.90	0.58	0.77	0.99	3.3	0.003	0.51	0.0	0.04	14.96	0.00	2.504	2.79	1.23	2.1	97.9	0.0	4.63	0.59	0.62	0.83	1.10	4069	484	6	0	11	12	0	logfile
✔	7ZiR	14738	2025-02-10	2022-04-08	2.5	2.51	2.04	2.7	0.002	0.34	0.0	0.03	9.02	0.00	2.317	1.65	0.00	2.0	98.0	0.0	-3.82	0.48	0.90	7.46	2.7	0.002	0.43	0.0	0.04	12.20	0.00	2.664	0.55	0.00	2.9	97.1	0.0	-3.73	1.02	0.51	0.93	7.87	2120	255	10	0	0	50	0	logfile
✔	8FEL	29032	2025-02-13	2022-12-06	4.64	5.02	4.40	4.5	0.001	0.35	0.0	0.04	14.88	0.00	2.030	6.97	1.98	3.8	96.2	0.0	-0.24	0.70	0.37	—	4.2	0.002	0.56	0.0	0.04	13.04	0.00	2.425	9.44	0.00	3.8	96.2	0.0	0.17	1.71	0.74	0.45	—	9201	1191	3	0	0	0	0	logfile
✔	7R9K	24328	2025-02-12	2021-06-29	4.1	4.93	—	4.0	0.002	0.35	0.0	0.04	4.65	0.00	2.223	3.24	0.00	10.3	89.1	0.6	-4.05	0.83	0.71	—	4.1	0.002	0.51	0.0	0.04	8.43	0.00	2.449	5.18	0.00	4.4	95.6	0.0	0.16	2.07	0.89	0.83	—	7726	505	1	0	0	0	3938	logfile
✔	8RAN	19020	2025-02-11	2023-12-01	3.25	3.85	3.27	3.4	0.001	0.35	0.0	0.04	10.56	0.00	2.076	3.31	0.00	1.2	98.8	0.0	3.22	0.64	0.79	1.84	3.4	0.003	0.57	0.0	0.04	13.78	0.00	2.504	9.05	0.65	1.9	98.1	0.0	1.37	1.31	0.65	0.85	2.17	5799	690	2	13	0	0	0	logfile
✔	7RZV	24779	2025-02-10	2021-08-27	2.11	2.24	—	2.0	0.005	0.35	0.0	0.03	14.68	0.00	2.348	5.44	0.00	0.0	100.0	0.0	3.06	0.79	0.80	2.21	2.0	0.004	0.36	0.0	0.03	15.96	0.00	2.434	3.69	1.01	0.0	100.0	0.0	5.91	0.88	0.83	0.83	1.79	2562	339	6	0	0	0	0	logfile
✔	8G3K	29700	2025-02-10	2023-02-08	2.2	2.34	2.21	2.3	0.002	0.36	0.0	0.03	9.98	0.00	2.348	3.50	0.00	0.7	99.3	0.0	5.07	0.46	0.82	4.79	2.3	0.002	0.47	0.0	0.03	16.63	0.00	2.600	4.59	1.23	0.4	99.6	0.0	4.75	1.11	0.46	0.83	4.89	2244	285	2	0	0	0	0	logfile
✘	7Fii	31598	2025-02-14	2021-07-31	4.3	4.37	—	4.1	0.002	0.36	0.0	0.04	8.97	0.00	2.073	1.66	0.00	0.9	99.1	0.0	3.08	0.64	0.69	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8765	1522	6	0	0	0	0	logfile
✔	8HiA	34813	2025-02-12	2022-11-19	4.9	4.49	2.13	9.6	0.001	0.36	0.0	0.05	15.83	0.00	2.251	1.11	2.86	12.1	87.6	0.2	-4.39	0.47	0.07	—	9.4	0.010	1.21	0.0	0.06	13.75	0.03	1.994	43.61	4.76	14.3	85.7	0.0	-5.76	11.82	0.69	0.27	—	7200	460	20	0	0	0	3660	logfile
✔	8FPS	29369	2025-02-14	2023-01-05	2.38	1.99	2.31	2.3	0.002	0.37	0.0	0.03	16.27	0.00	2.215	3.41	1.01	1.2	98.8	0.0	4.11	0.61	0.84	3.13	2.3	0.002	0.43	0.0	0.03	16.47	0.00	2.625	2.98	1.01	0.9	99.1	0.0	4.21	0.26	0.60	0.85	3.67	10602	1338	20	0	4	152	0	logfile
✔	7R9E	24324	2025-02-12	2021-06-29	4.0	4.83	—	3.9	0.002	0.37	0.0	0.04	4.45	0.00	2.277	3.11	0.00	9.9	88.7	1.4	-3.58	0.87	0.80	—	3.9	0.002	0.60	0.0	0.04	9.51	0.00	2.439	7.25	0.25	5.6	94.4	0.0	-0.09	2.08	0.88	0.82	—	7726	505	1	0	0	0	3938	logfile
✔	8FEJ	29029	2025-02-14	2022-12-06	4.64	5.33	4.68	4.6	0.001	0.37	0.0	0.04	13.97	0.00	2.030	6.27	4.30	2.9	96.9	0.2	0.48	0.88	0.69	—	4.6	0.002	0.57	0.0	0.04	12.58	0.00	2.425	7.73	0.00	5.7	94.3	0.0	-0.57	1.32	0.91	0.76	—	10464	1368	3	0	0	0	0	logfile
✔	8D9K	27264	2025-02-11	2022-06-10	3.72	4.58	3.85	4.1	0.001	0.37	0.0	0.03	16.35	0.00	2.270	6.46	0.64	1.9	98.1	0.0	1.53	0.89	0.84	2.42	4.1	0.004	0.56	0.0	0.04	17.30	0.00	2.258	10.58	2.35	2.4	97.6	0.0	0.60	0.59	0.90	0.86	2.22	5708	546	3	65	0	0	0	logfile
✔	7R9M	24329	2025-02-12	2021-06-29	4.0	4.58	—	3.9	0.002	0.38	0.0	0.04	4.68	0.00	2.214	3.88	0.00	8.3	90.9	0.8	-4.83	0.85	0.77	—	3.9	0.002	0.53	0.0	0.04	9.21	0.00	2.448	5.31	0.49	2.2	97.8	0.0	-0.40	1.71	0.86	0.79	—	7727	505	1	0	0	0	3939	logfile

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