Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7SQV	25396	2025-02-11	2021-11-06	2.3	2.95	2.29	2.8	0.001	0.38	0.0	0.04	16.08	0.00	2.314	1.47	0.63	0.7	99.3	0.0	1.86	0.76	0.88	3.59	2.8	0.004	0.52	0.0	0.04	16.26	0.00	2.516	0.68	1.46	1.9	98.1	0.0	1.56	1.99	0.77	0.90	3.74	4471	573	5	0	0	7	0	logfile
✔	8H0P	34413	2025-02-13	2022-09-30	3.15	2.98	3.14	3.2	0.001	0.40	0.0	0.04	7.54	0.00	2.208	5.68	0.10	1.2	98.8	0.0	-2.49	0.52	0.65	1.60	3.2	0.003	0.58	0.0	0.04	13.68	0.00	2.559	8.37	1.73	2.8	97.2	0.0	-0.18	0.78	0.57	0.78	2.63	8932	1137	6	0	0	0	0	logfile
✔	7WoG	32651	2025-02-11	2022-01-21	4.06	2.95	—	2.0	0.001	0.41	0.0	0.04	8.09	0.00	2.293	10.22	3.78	8.0	92.0	0.0	-3.98	0.51	0.51	—	2.2	0.003	0.71	0.0	0.05	10.93	0.01	2.441	16.02	0.00	13.6	86.4	0.0	-2.77	0.94	0.53	0.54	—	3362	433	3	0	0	0	0	logfile
✔	8H8B	34541	2025-02-12	2022-10-22	3.16	3.37	3.20	3.3	0.001	0.46	0.0	0.04	13.00	0.00	2.226	6.42	0.67	6.3	93.7	0.0	-2.99	0.70	0.76	2.74	3.3	0.003	0.69	0.0	0.05	15.40	0.00	2.457	5.62	2.70	11.1	88.9	0.0	-1.90	0.62	0.74	0.85	3.83	8344	1027	1	0	0	0	0	logfile
✔	7JLX	22383	2025-02-10	2020-07-30	4.6	3.86	—	3.7	0.001	0.42	0.0	0.04	3.80	0.00	2.240	2.96	0.00	6.7	93.3	0.0	1.23	0.54	0.51	—	3.8	0.004	0.88	0.0	0.05	7.64	0.00	2.240	3.38	0.00	18.9	80.5	0.6	-3.12	2.45	0.48	0.54	—	3288	664	4	0	0	0	0	logfile
✔	8i4H	35173	2025-02-11	2023-01-19	3.81	3.30	3.92	3.7	0.001	0.43	0.0	0.04	9.23	0.00	2.262	10.14	5.85	7.4	92.6	0.0	-4.65	0.69	0.64	1.02	3.8	0.005	0.92	0.0	0.05	14.55	0.01	2.269	23.17	4.60	14.7	85.3	0.0	-3.17	1.84	0.72	0.69	1.32	6539	833	2	0	0	0	0	logfile
✔	8D9K	27264	2025-02-11	2022-06-10	3.72	4.58	3.85	4.1	0.001	0.37	0.0	0.03	16.35	0.00	2.270	6.46	0.64	1.9	98.1	0.0	1.53	0.89	0.84	2.42	4.1	0.004	0.56	0.0	0.04	17.30	0.00	2.258	10.58	2.35	2.4	97.6	0.0	0.60	0.59	0.90	0.86	2.22	5708	546	3	65	0	0	0	logfile
✔	7FiJ	31599	2025-02-11	2021-07-31	3.8	2.32	—	1.8	0.001	0.41	0.0	0.04	8.02	0.00	2.344	3.95	0.00	4.1	95.9	0.0	1.10	0.58	0.50	3.05	1.6	0.005	0.82	0.0	0.05	11.53	0.00	2.493	10.22	5.00	14.4	85.6	0.0	-1.32	0.68	0.62	0.56	3.46	3061	561	1	0	0	0	0	logfile
✔	7XMR	33302	2025-02-11	2022-04-26	3.1	3.31	2.93	3.3	0.001	0.40	0.0	0.04	10.86	0.00	2.250	5.63	0.00	1.6	98.4	0.0	-3.39	0.52	0.64	1.08	3.3	0.003	0.66	0.0	0.04	14.67	0.00	2.528	9.26	3.16	3.5	96.5	0.0	0.22	0.63	0.58	0.73	1.35	6611	871	5	0	0	0	0	logfile
✔	7JSH	22454	2025-02-12	2020-08-14	4.4	7.07	—	17.0	0.001	0.20	0.0	0.02	8.81	0.00	2.581	0.00	0.00	13.1	83.7	3.2	-3.27	0.49	0.25	—	5.3	0.007	1.51	0.0	0.06	14.49	0.01	2.198	18.51	0.00	30.2	69.4	0.4	-5.64	6.11	0.72	0.66	—	7916	1904	8	15	0	0	0	logfile
✔	6HD5	0201	2025-02-14	2018-08-17	4.8	6.01	—	5.9	0.001	0.40	0.0	0.03	8.70	0.00	2.289	4.36	0.10	10.5	88.4	1.1	-1.81	0.36	0.32	—	5.9	0.004	0.83	0.0	0.04	12.18	0.00	2.340	19.65	0.00	7.4	92.5	0.1	-0.91	2.10	0.46	0.58	—	9707	1234	3	0	0	0	0	logfile
✔	7SAM	24952	2025-02-11	2021-09-22	4.3	6.95	4.38	4.2	0.001	0.39	0.0	0.02	23.50	0.00	1.952	2.96	0.00	0.0	0.0	0.0	—	0.84	0.51	—	4.3	0.006	0.87	0.0	0.04	28.10	0.01	1.833	65.98	0.00	0.0	0.0	0.0	—	5.47	0.95	0.86	—	5399	0	1	169	0	0	1802	logfile
✔	8FEJ	29029	2025-02-14	2022-12-06	4.64	5.33	4.68	4.6	0.001	0.37	0.0	0.04	13.97	0.00	2.030	6.27	4.30	2.9	96.9	0.2	0.48	0.88	0.69	—	4.6	0.002	0.57	0.0	0.04	12.58	0.00	2.425	7.73	0.00	5.7	94.3	0.0	-0.57	1.32	0.91	0.76	—	10464	1368	3	0	0	0	0	logfile
✔	8FEL	29032	2025-02-13	2022-12-06	4.64	5.02	4.40	4.5	0.001	0.35	0.0	0.04	14.88	0.00	2.030	6.97	1.98	3.8	96.2	0.0	-0.24	0.70	0.37	—	4.2	0.002	0.56	0.0	0.04	13.04	0.00	2.425	9.44	0.00	3.8	96.2	0.0	0.17	1.71	0.74	0.45	—	9201	1191	3	0	0	0	0	logfile
✔	8TZV	41770	2025-02-11	2023-08-28	2.8	3.84	3.03	3.4	0.001	0.40	0.0	0.04	7.77	0.00	2.199	6.62	0.47	1.0	99.0	0.0	0.07	0.80	0.73	1.36	3.5	0.003	0.74	0.0	0.05	14.08	0.00	2.567	11.46	1.89	2.8	97.2	0.0	-0.16	3.15	0.82	0.76	1.65	5680	696	4	0	2	0	0	logfile
✔	8RAN	19020	2025-02-11	2023-12-01	3.25	3.85	3.27	3.4	0.001	0.35	0.0	0.04	10.56	0.00	2.076	3.31	0.00	1.2	98.8	0.0	3.22	0.64	0.79	1.84	3.4	0.003	0.57	0.0	0.04	13.78	0.00	2.504	9.05	0.65	1.9	98.1	0.0	1.37	1.31	0.65	0.85	2.17	5799	690	2	13	0	0	0	logfile
✔	8K1V	36805	2025-02-11	2023-07-11	3.48	3.80	3.32	3.9	0.001	0.31	0.0	0.03	13.71	0.00	2.283	2.43	0.00	0.6	99.4	0.0	5.96	0.54	0.76	1.54	3.9	0.003	0.57	0.0	0.04	14.71	0.00	2.498	4.74	2.45	1.7	98.3	0.0	4.74	0.75	0.54	0.79	2.29	4059	484	6	0	11	2	0	logfile
✔	8HiA	34813	2025-02-12	2022-11-19	4.9	4.49	2.13	9.6	0.001	0.36	0.0	0.05	15.83	0.00	2.251	1.11	2.86	12.1	87.6	0.2	-4.39	0.47	0.07	—	9.4	0.010	1.21	0.0	0.06	13.75	0.03	1.994	43.61	4.76	14.3	85.7	0.0	-5.76	11.82	0.69	0.27	—	7200	460	20	0	0	0	3660	logfile
✔	7LH3	23335	2025-02-14	2021-01-21	4.3	4.87	—	4.6	0.001	0.40	0.0	0.04	7.88	0.00	2.258	4.71	1.06	1.8	98.2	0.0	2.29	0.61	0.73	—	4.6	0.003	0.59	0.0	0.04	10.70	0.00	2.520	8.72	0.00	3.0	97.0	0.0	1.97	1.10	0.63	0.82	—	10452	1360	2	0	0	0	0	logfile
✔	7Xo0	33332	2025-02-10	2022-04-30	3.0	2.48	1.85	3.1	0.001	0.39	0.0	0.05	16.62	0.00	2.280	4.76	0.00	5.0	95.0	0.0	-2.66	0.47	0.87	7.11	3.1	0.004	0.45	0.0	0.05	17.18	0.00	2.579	3.05	1.94	7.2	92.8	0.0	-2.63	0.31	0.46	0.87	6.85	2550	372	6	0	0	0	0	logfile

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