Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7LH3	23335	2025-02-14	2021-01-21	4.3	4.87	—	4.6	0.001	0.40	0.0	0.04	7.88	0.00	2.258	4.71	1.06	1.8	98.2	0.0	2.29	0.61	0.73	—	4.6	0.003	0.59	0.0	0.04	10.70	0.00	2.520	8.72	0.00	3.0	97.0	0.0	1.97	1.10	0.63	0.82	—	10452	1360	2	0	0	0	0	logfile
✔	8D9K	27264	2025-02-11	2022-06-10	3.72	4.58	3.85	4.1	0.001	0.37	0.0	0.03	16.35	0.00	2.270	6.46	0.64	1.9	98.1	0.0	1.53	0.89	0.84	2.42	4.1	0.004	0.56	0.0	0.04	17.30	0.00	2.258	10.58	2.35	2.4	97.6	0.0	0.60	0.59	0.90	0.86	2.22	5708	546	3	65	0	0	0	logfile
✔	7YD1	33745	2025-02-10	2022-07-02	2.99	2.38	7.99	2.2	0.002	0.49	0.0	0.04	9.00	0.00	2.215	6.14	5.46	10.0	90.0	0.0	-4.06	0.75	0.74	3.20	2.2	0.007	0.80	0.0	0.05	13.40	0.01	2.520	10.60	3.01	11.6	88.4	0.0	-2.18	0.59	0.77	0.79	3.13	3305	428	3	0	0	0	0	logfile
✔	7RQS	24635	2025-02-12	2021-08-07	3.57	2.31	3.59	2.0	0.002	0.54	0.0	0.04	13.38	0.00	2.088	9.87	0.26	7.6	92.4	0.0	-0.91	0.70	0.68	2.53	2.0	0.003	0.61	0.0	0.04	15.54	0.00	2.009	8.47	2.37	7.8	92.1	0.2	-0.98	0.57	0.70	0.69	2.22	7792	1074	2	0	1	0	0	logfile
✘	8FU6	29453	2025-02-13	2023-01-16	2.9	3.13	2.94	3.2	0.002	0.60	0.0	0.04	12.46	0.00	2.199	3.83	0.00	2.6	97.4	0.0	0.07	0.58	0.80	3.34	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8834	1112	6	0	0	0	0	logfile
✔	8CSV	26972	2025-02-11	2022-05-13	2.7	2.53	2.72	2.6	0.002	0.47	0.0	0.04	11.85	0.00	2.246	2.73	1.03	2.7	97.1	0.2	0.82	0.53	0.85	5.33	2.6	0.002	0.46	0.0	0.04	15.58	0.00	2.548	3.83	2.33	3.3	96.5	0.2	2.33	0.56	0.56	0.88	4.24	3712	483	3	0	0	48	0	logfile
✔	7QFQ	13947	2025-02-14	2021-12-06	3.6	3.83	3.58	4.0	0.002	0.54	0.0	0.04	12.93	0.00	2.177	8.31	0.00	5.4	94.6	0.0	-0.70	0.65	0.70	1.50	4.0	0.003	0.55	0.0	0.04	14.76	0.00	2.340	6.51	1.09	5.4	94.6	0.0	-0.82	0.38	0.67	0.72	1.36	10659	1291	1	0	0	0	0	logfile
✔	8F6i	28884	2025-02-14	2022-11-16	4.03	4.27	4.04	4.2	0.002	0.50	0.0	0.04	13.67	0.00	2.070	7.30	0.00	5.0	94.9	0.2	0.18	0.76	0.80	—	4.2	0.003	0.65	0.0	0.04	13.88	0.00	1.992	9.29	0.09	6.0	94.0	0.0	0.18	0.46	0.77	0.81	—	10367	1351	8	0	6	0	0	logfile
✔	7XoC	33344	2025-02-11	2022-05-01	3.0	2.28	3.19	2.1	0.002	0.49	0.0	0.04	10.96	0.00	2.149	5.34	0.00	2.1	97.9	0.0	-2.11	0.73	0.69	2.72	2.1	0.004	0.68	0.0	0.04	15.69	0.00	2.411	6.05	1.76	2.6	97.4	0.0	0.64	1.97	0.77	0.82	3.08	6432	786	5	0	5	0	0	logfile
✔	8BDZ	15995	2025-02-10	2022-10-20	3.13	3.37	1.52	3.1	0.002	0.52	0.0	0.04	12.41	0.00	2.264	6.23	0.00	3.0	97.0	0.0	2.26	0.48	0.84	2.77	3.1	0.003	0.63	0.0	0.04	14.42	0.00	2.509	6.39	1.64	2.0	98.0	0.0	2.99	0.44	0.49	0.86	2.77	3309	414	3	0	0	0	0	logfile
✔	8B6Z	15893	2025-02-11	2022-09-27	2.9	3.26	3.37	2.8	0.002	0.51	0.0	0.04	12.07	0.00	2.286	0.59	0.27	1.4	98.6	0.0	-0.69	0.20	0.56	1.62	2.8	0.003	0.73	0.0	0.05	15.35	0.01	2.521	5.37	0.80	3.6	96.4	0.0	-0.29	1.07	0.23	0.76	1.48	3581	442	2	8	0	0	0	logfile
✔	8FZR	29638	2025-02-11	2023-01-29	3.6	5.09	4.10	4.1	0.002	0.48	0.0	0.03	20.14	0.00	2.234	12.34	6.97	4.6	94.4	1.0	-1.87	0.52	0.24	0.50	4.2	0.003	0.68	0.0	0.04	21.91	0.00	2.493	16.23	5.62	6.8	93.0	0.2	-1.39	1.63	0.82	0.63	0.78	5711	503	3	77	1	0	0	logfile
✘	7Xo9	33341	2025-02-11	2022-05-01	3.0	2.26	3.23	3.1	0.002	0.47	0.0	0.06	13.06	0.01	2.059	3.31	0.00	2.0	98.0	0.0	-1.79	0.74	0.73	2.69	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6483	793	3	0	5	0	0	logfile
✘	7WL8	32577	2025-02-14	2022-01-12	3.4	3.22	—	3.4	0.002	0.49	0.0	0.04	9.00	0.00	2.251	6.35	1.87	4.6	95.3	0.1	-3.89	0.83	0.80	2.71	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10198	1330	2	0	0	0	0	logfile
✔	7N9Q	24259	2025-02-12	2021-06-18	4.6	4.92	—	2.3	0.002	0.88	0.0	0.00	5.65	0.00	2.600	0.00	0.00	8.9	90.3	0.8	-1.59	0.79	0.69	—	2.6	0.006	1.47	0.0	0.00	7.94	0.00	2.432	35.79	0.00	28.5	70.6	1.0	-4.70	2.66	0.86	0.82	—	6945	2315	1	0	0	0	0	logfile
✔	7WL7	32576	2025-02-14	2022-01-12	3.51	3.41	—	3.5	0.002	0.50	0.0	0.04	8.84	0.00	2.214	5.97	3.39	4.6	95.3	0.1	-3.63	0.79	0.77	2.09	3.5	0.004	0.82	0.0	0.04	13.94	0.00	2.447	12.56	3.48	6.2	93.8	0.0	0.10	0.82	0.79	0.79	1.88	10198	1330	2	0	0	0	0	logfile
✔	7WL2	32574	2025-02-14	2022-01-12	3.25	2.44	—	2.9	0.002	0.49	0.0	0.04	8.51	0.00	2.207	6.40	2.14	4.9	95.0	0.1	-4.09	0.76	0.76	3.15	2.2	0.004	0.67	0.0	0.04	14.64	0.00	2.468	9.29	4.01	5.7	94.3	0.1	0.11	1.21	0.80	0.81	2.22	10198	1330	2	0	0	0	0	logfile
✔	7Li6	23361	2025-02-11	2021-01-26	3.5	3.98	—	4.0	0.002	0.67	0.0	0.07	12.31	0.00	2.310	5.37	1.72	5.0	95.0	0.0	-3.07	0.57	0.74	1.98	3.9	0.003	0.60	0.0	0.04	14.75	0.00	2.518	5.21	3.12	6.4	93.6	0.0	-0.61	0.86	0.65	0.79	1.77	6249	767	5	0	26	0	0	logfile
✔	7WoP	32654	2025-02-11	2022-01-22	3.51	2.51	—	3.4	0.002	0.54	0.0	0.04	10.83	0.00	2.203	10.97	9.21	11.4	88.6	0.0	-4.81	0.64	0.66	1.96	3.4	0.004	0.76	0.0	0.05	14.77	0.00	2.429	14.20	5.05	15.3	84.7	0.0	-3.44	1.28	0.64	0.68	2.33	5107	669	3	0	0	0	0	logfile
✔	7FAS	31505	2025-02-14	2021-07-07	3.6	2.95	—	3.7	0.002	0.52	0.0	0.04	15.63	0.00	2.193	9.10	0.09	4.1	95.9	0.0	0.85	0.72	0.73	0.88	3.7	0.004	0.58	0.0	0.04	17.40	0.00	2.487	8.10	2.14	4.8	95.2	0.0	0.66	0.45	0.73	0.76	0.92	10173	1229	1	0	0	0	0	logfile

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