Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7MGW	23830	2025-02-11	2021-04-13	3.5	3.79	—	4.0	0.003	0.64	0.0	0.04	13.53	0.00	2.292	9.19	1.40	2.9	97.1	0.0	-2.49	0.39	0.53	1.34	4.0	0.003	0.64	0.0	0.04	15.22	0.00	2.540	10.39	4.05	5.1	94.9	0.0	-0.95	1.02	0.59	0.76	1.69	6223	765	5	0	18	0	0	logfile
✔	8BCZ	15971	2025-02-12	2022-10-17	2.9	3.19	2.92	3.2	0.003	0.49	0.0	0.04	9.57	0.00	2.204	6.10	1.18	2.8	97.2	0.0	0.33	0.65	0.83	4.65	3.2	0.003	0.53	0.0	0.04	13.40	0.00	2.521	4.96	3.01	2.3	97.7	0.0	0.74	0.42	0.63	0.83	4.03	8505	1100	9	0	0	0	0	logfile
✔	7WRo	32734	2025-02-10	2022-01-27	3.4	3.62	—	3.6	0.008	1.11	0.0	0.07	13.65	0.01	2.309	7.42	0.00	7.6	92.4	0.0	-1.94	0.58	0.76	2.56	3.6	0.003	0.68	0.0	0.05	15.04	0.00	2.396	10.64	4.62	4.9	95.1	0.0	-1.35	0.35	0.58	0.77	2.35	3179	412	3	0	0	0	0	logfile
✔	7Yoo	33985	2025-02-13	2022-08-01	3.11	2.28	—	3.2	0.003	0.44	0.0	0.04	13.43	0.00	2.153	3.82	0.00	1.7	98.3	0.0	-0.16	0.78	0.81	3.56	3.2	0.003	0.55	0.0	0.04	15.17	0.00	2.565	3.60	2.09	2.5	97.5	0.0	0.66	0.92	0.79	0.84	3.21	9188	1169	6	0	0	0	0	logfile
✔	7ZCF	14629	2025-02-11	2022-03-28	4.0	4.23	3.97	4.2	0.003	0.66	0.0	0.04	14.30	0.00	2.089	10.15	0.56	14.8	85.2	0.0	-2.45	0.67	0.71	—	4.2	0.003	0.70	0.0	0.04	16.17	0.00	2.511	8.30	2.51	13.3	86.7	0.0	-2.75	0.61	0.69	0.75	—	3312	426	3	0	1	0	0	logfile
✔	7NPW	12524	2025-02-14	2021-02-28	3.99	4.53	—	4.3	0.003	0.67	0.0	0.04	13.77	0.00	2.290	12.91	0.00	3.3	96.7	0.0	0.92	0.52	0.76	1.58	4.3	0.003	0.80	0.0	0.04	16.25	0.00	2.519	15.02	2.84	3.7	96.3	0.0	0.70	0.62	0.56	0.81	1.72	9723	1278	3	0	0	0	0	logfile
✔	7ZD5	14636	2025-02-13	2022-03-29	3.17	3.33	3.13	3.3	0.006	0.73	0.0	0.05	13.88	0.00	2.219	9.16	0.11	1.7	98.3	0.0	-1.88	0.75	0.88	2.85	3.3	0.003	0.61	0.0	0.04	15.56	0.00	2.577	7.23	1.28	1.4	98.6	0.0	1.72	0.41	0.70	0.88	2.07	8967	1157	2	0	0	0	0	logfile
✔	7WCR	32428	2025-02-11	2021-12-20	3.5	3.71	—	4.0	0.003	0.71	0.0	0.05	12.88	0.01	1.713	4.50	1.28	2.7	96.9	0.3	-2.76	0.57	0.64	1.03	3.7	0.004	0.72	0.0	0.04	15.61	0.00	2.436	10.04	3.83	5.6	94.4	0.0	-0.67	0.78	0.61	0.70	1.32	4880	628	3	0	0	0	0	logfile
✔	7WHZ	32516	2025-02-11	2022-01-01	3.42	3.64	—	3.7	0.007	0.94	0.0	0.06	14.21	0.01	2.276	5.93	0.40	8.4	91.6	0.0	-4.20	0.67	0.81	2.33	3.7	0.003	0.64	0.0	0.04	16.06	0.00	2.506	7.13	3.36	6.0	94.0	0.0	-2.05	0.55	0.67	0.84	2.55	6810	887	8	0	1	0	0	logfile
✔	8D8R	27255	2025-02-11	2022-06-08	4.1	4.18	1.95	4.1	0.011	1.25	0.0	0.06	10.92	0.01	2.512	1.08	0.00	2.1	97.9	0.0	1.96	0.59	0.61	—	4.1	0.003	0.73	0.0	0.05	13.10	0.00	2.374	11.22	0.00	6.0	94.0	0.0	-0.50	1.87	0.62	0.66	—	3323	425	4	0	1	0	0	logfile
✔	8A1R	15084	2025-02-14	2022-06-01	3.6	5.63	3.62	3.4	0.011	0.86	0.0	0.06	16.56	0.00	2.097	11.72	0.00	5.2	94.8	0.0	-0.06	0.91	0.75	-0.28	3.5	0.004	0.71	0.0	0.05	16.17	0.00	2.460	17.48	1.42	6.1	93.9	0.0	-0.17	0.58	0.95	0.86	-0.05	9286	1186	4	0	4	0	0	logfile
✔	7Wi0	32517	2025-02-12	2022-01-01	3.82	4.11	—	4.1	0.008	1.05	0.0	0.06	14.37	0.01	2.265	6.66	0.40	8.6	91.3	0.1	-4.32	0.72	0.81	2.23	4.1	0.004	0.78	0.0	0.04	16.37	0.00	2.381	9.05	3.76	8.3	91.7	0.0	-2.32	1.84	0.71	0.82	1.95	6823	886	8	0	1	0	0	logfile
✔	7WL7	32576	2025-02-14	2022-01-12	3.51	3.41	—	3.5	0.002	0.50	0.0	0.04	8.84	0.00	2.214	5.97	3.39	4.6	95.3	0.1	-3.63	0.79	0.77	2.09	3.5	0.004	0.82	0.0	0.04	13.94	0.00	2.447	12.56	3.48	6.2	93.8	0.0	0.10	0.82	0.79	0.79	1.88	10198	1330	2	0	0	0	0	logfile
✔	7WP6	32676	2025-02-11	2022-01-23	3.81	4.11	—	4.1	0.008	1.07	0.0	0.06	14.82	0.01	2.224	7.27	0.69	9.4	90.4	0.1	-3.82	0.70	0.79	2.25	4.1	0.003	0.78	0.0	0.04	16.86	0.00	2.533	10.91	4.94	5.9	94.0	0.1	-1.82	1.31	0.70	0.78	1.70	6748	861	9	0	3	0	0	logfile
✔	7WB5	32395	2025-02-11	2021-12-15	3.7	3.89	—	3.9	0.011	1.41	0.0	0.09	21.95	0.02	2.188	18.30	14.00	18.2	79.6	2.2	-4.90	0.61	0.78	2.04	3.9	0.004	0.84	0.0	0.05	16.80	0.01	2.344	16.72	5.71	9.0	91.0	0.0	-3.57	1.63	0.62	0.77	2.13	3256	408	4	0	3	0	0	logfile
✔	7WLE	32583	2025-02-14	2022-01-13	3.62	3.17	—	3.3	0.003	0.50	0.0	0.04	9.91	0.00	2.240	9.09	5.25	6.1	93.9	0.0	-3.62	0.78	0.75	1.67	3.2	0.006	1.05	1.0	0.05	14.95	0.00	2.238	17.99	4.63	5.9	94.1	0.0	-1.02	1.43	0.80	0.79	1.57	10188	1324	2	0	0	0	0	logfile
✔	7MN6	23917	2025-02-14	2021-04-30	3.09	3.68	3.18	3.5	0.013	1.51	0.0	0.08	11.93	0.01	2.392	0.37	0.00	3.5	96.4	0.2	-0.15	0.85	0.85	3.26	3.5	0.003	0.62	0.0	0.04	13.65	0.00	2.535	3.08	0.66	3.9	96.0	0.1	0.13	1.39	0.84	0.86	3.09	9649	1227	8	0	13	0	0	logfile
✔	7V24	31636	2025-02-11	2021-08-07	3.29	3.50	—	3.4	0.006	0.80	0.0	0.05	13.64	0.00	2.164	12.03	0.24	11.3	88.7	0.0	-1.86	0.67	0.83	3.60	3.4	0.004	0.67	0.0	0.04	15.27	0.00	2.508	8.69	3.33	9.0	91.0	0.0	-0.94	0.38	0.66	0.84	3.41	3814	487	3	0	0	0	0	logfile
✔	8DH7	27431	2025-02-12	2022-06-25	2.99	3.24	3.02	3.3	0.003	0.59	0.0	0.05	12.96	0.01	2.117	6.55	0.55	2.8	97.1	0.1	0.73	0.76	0.86	4.31	3.3	0.002	0.54	0.0	0.04	15.61	0.00	2.469	4.85	1.77	2.5	97.4	0.1	0.90	0.34	0.75	0.88	3.24	8274	1052	2	0	0	0	0	logfile
✔	7UiU	26553	2025-02-10	2022-03-29	2.8	3.11	2.72	3.1	0.004	0.62	0.0	0.04	13.60	0.00	2.356	3.35	0.00	4.8	95.2	0.0	-2.09	0.28	0.82	1.99	3.3	0.005	0.90	0.0	0.04	18.25	0.00	2.504	8.38	1.67	6.0	94.0	0.0	-2.70	1.37	0.28	0.89	2.33	607	85	1	0	0	0	0	logfile

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