Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8Q92	18268	2025-02-10	2023-08-19	3.05	2.89	2.63	3.1	0.008	1.37	0.0	0.09	13.95	0.01	2.531	0.94	1.23	8.7	91.3	0.0	-3.17	0.37	0.86	4.77	3.1	0.004	0.74	0.0	0.05	15.68	0.00	2.615	3.51	1.23	6.2	93.8	0.0	-2.76	0.28	0.32	0.83	3.47	2091	282	3	0	0	0	0	logfile
✔	8T8E	41097	2025-02-13	2023-06-22	3.3	3.54	3.33	3.5	0.003	0.69	0.0	0.04	16.79	0.00	2.199	12.90	1.03	9.0	90.9	0.2	-3.74	0.72	0.78	1.57	3.5	0.004	0.65	0.0	0.04	17.65	0.00	2.527	8.68	3.59	8.9	91.1	0.0	-2.47	0.36	0.73	0.79	1.19	8755	1085	3	0	0	0	0	logfile
✔	7YR4	34045	2025-02-11	2022-08-08	4.12	4.78	5.11	4.9	0.008	1.16	0.0	0.05	14.91	0.01	2.224	7.76	0.00	6.4	93.6	0.0	-1.79	0.56	0.53	—	4.9	0.003	0.76	0.0	0.04	14.72	0.00	2.354	14.64	0.00	5.5	94.5	0.0	-0.32	1.85	0.63	0.76	—	6394	787	2	0	0	0	0	logfile
✔	8iQ6	35658	2025-02-12	2023-03-15	3.4	3.65	3.40	3.7	0.004	0.59	0.0	0.05	15.45	0.00	2.254	5.62	0.29	4.1	95.9	0.0	1.39	0.75	0.86	2.60	3.7	0.002	0.49	0.0	0.04	15.48	0.00	2.535	4.01	2.34	3.1	96.8	0.1	1.55	1.13	0.74	0.85	2.19	7059	954	6	0	1	0	0	logfile
✔	8SX3	40825	2025-02-11	2023-05-19	4.0	4.24	4.01	4.2	0.010	1.45	0.0	0.07	14.59	0.01	2.144	2.53	0.00	1.8	98.2	0.0	0.92	0.77	0.76	—	4.2	0.004	0.80	0.0	0.04	15.62	0.00	2.498	14.96	3.88	3.3	96.5	0.2	0.39	0.95	0.78	0.80	—	4816	614	6	0	2	0	0	logfile
✔	8iSS	35694	2025-02-13	2023-03-21	3.19	3.41	3.22	3.5	0.003	0.51	0.0	0.04	20.03	0.00	2.026	15.69	0.39	6.0	94.0	0.0	-1.16	0.64	0.77	2.33	3.6	0.003	0.57	0.0	0.04	20.19	0.00	2.051	8.26	2.75	5.2	94.8	0.0	0.14	0.41	0.64	0.76	1.73	8807	889	6	80	1	0	0	logfile
✔	8H2G	34437	2025-02-13	2022-10-06	3.01	3.20	3.02	3.2	0.003	0.57	0.0	0.04	16.85	0.00	2.123	9.49	0.61	3.8	96.2	0.0	0.07	0.64	0.76	1.58	3.2	0.002	0.57	0.0	0.04	17.27	0.00	2.502	6.42	4.39	3.4	96.5	0.1	0.14	0.45	0.63	0.76	1.64	9023	1145	6	0	1	0	0	logfile
✔	8Q7Y	18244	2025-02-14	2023-08-17	2.6	2.67	2.58	2.6	0.003	0.69	0.0	0.04	19.41	0.00	2.081	13.77	3.87	5.6	94.4	0.0	-1.10	0.64	0.77	3.25	2.6	0.006	0.79	0.0	0.05	18.88	0.01	2.533	10.20	5.75	8.3	91.7	0.0	-1.23	0.43	0.68	0.82	3.23	10032	1212	4	0	0	0	0	logfile
✔	8HN8	34908	2025-02-13	2022-12-07	3.0	3.50	3.16	3.5	0.003	0.59	0.0	0.04	13.37	0.00	2.225	4.83	0.41	3.1	96.9	0.0	0.55	0.57	0.78	3.07	3.5	0.002	0.51	0.0	0.04	15.73	0.00	2.547	3.30	2.18	3.7	96.3	0.0	0.83	0.37	0.57	0.78	2.82	8860	1120	6	0	1	0	0	logfile
✔	8AZ5	15754	2025-02-11	2022-09-05	2.3	2.46	2.29	2.4	0.005	0.66	0.0	0.06	11.45	0.00	2.485	10.18	0.00	1.6	98.4	0.0	-2.90	0.56	0.89	6.92	2.4	0.005	0.62	0.0	0.05	12.46	0.00	2.111	3.69	0.23	3.4	96.6	0.0	-2.94	0.52	0.58	0.91	7.30	4060	540	53	0	20	20	0	logfile
✔	8PD2	17598	2025-02-12	2023-06-11	3.25	2.29	3.19	2.1	0.004	0.52	0.0	0.04	12.99	0.00	2.322	3.02	0.00	1.4	98.6	0.0	0.72	0.62	0.78	3.03	2.1	0.004	0.56	0.0	0.04	16.04	0.00	2.495	4.56	2.22	1.5	98.5	0.0	2.47	0.98	0.68	0.82	2.54	8270	1047	1	0	0	0	0	logfile
✔	8XCV	38256	2025-02-11	2023-12-10	2.83	3.05	—	3.0	0.007	0.80	0.0	0.05	16.46	0.01	2.441	4.86	2.95	1.5	98.5	0.0	1.22	0.48	0.89	4.82	3.0	0.002	0.49	0.0	0.04	15.81	0.00	2.549	5.01	0.29	2.7	97.3	0.0	1.92	0.85	0.48	0.91	4.15	3310	415	2	0	1	7	0	logfile
✔	8BWo	16292	2025-02-14	2022-12-07	3.2	3.36	3.15	3.4	0.005	1.11	0.0	0.05	13.92	0.01	1.900	2.44	0.47	4.2	95.8	0.0	-1.54	0.58	0.79	3.27	3.4	0.003	0.60	0.0	0.04	16.19	0.00	1.920	6.82	2.28	1.6	98.4	0.0	1.34	1.80	0.68	0.85	2.22	9712	1211	2	0	4	0	0	logfile
✔	8SGW	40470	2025-02-14	2023-04-13	2.5	2.88	2.51	2.8	0.004	0.69	0.0	0.24	21.89	0.01	1.492	13.07	0.00	5.0	95.0	0.0	0.83	0.64	0.77	3.15	2.8	0.005	0.76	0.0	0.05	16.40	0.01	2.335	9.24	1.63	6.1	93.7	0.2	0.67	2.16	0.61	0.78	2.76	10414	1226	4	0	38	0	0	logfile
✔	8QCT	18335	2025-02-10	2023-08-28	2.6	2.36	2.57	2.6	0.003	0.49	0.0	0.04	15.84	0.00	2.202	7.25	0.00	1.9	98.1	0.0	0.55	0.69	0.84	3.34	2.6	0.003	0.53	0.0	0.04	16.22	0.00	2.416	6.65	2.54	2.4	97.6	0.0	2.42	0.38	0.68	0.83	3.16	3259	418	2	0	1	0	0	logfile
✔	8JKZ	36384	2025-02-13	2023-06-02	3.6	3.43	3.51	3.4	0.007	0.74	0.0	0.04	17.97	0.00	2.219	10.00	1.00	10.0	89.9	0.1	-1.21	0.72	0.84	2.29	3.5	0.005	0.64	0.0	0.04	17.90	0.00	2.467	8.34	3.10	11.0	89.0	0.0	-0.78	0.39	0.75	0.85	1.97	8444	1053	3	0	1	0	0	logfile
✔	8G13	29660	2025-02-14	2023-02-01	2.3	3.09	2.30	2.7	0.004	0.60	0.0	0.05	14.97	0.00	2.083	5.94	0.86	3.9	96.1	0.0	0.94	0.88	0.92	3.62	2.7	0.003	0.50	0.0	0.04	15.54	0.00	2.166	7.51	0.86	3.8	96.2	0.0	0.85	0.25	0.88	0.93	4.64	10008	1336	4	0	0	0	12	logfile
✔	8T78	41087	2025-02-14	2023-06-19	3.02	3.65	3.08	3.5	0.007	1.07	0.0	0.06	19.85	0.01	2.181	4.81	0.51	2.5	97.5	0.0	-0.99	0.75	0.84	2.70	3.5	0.003	0.56	0.0	0.04	19.75	0.00	2.476	6.58	3.73	3.1	96.9	0.0	0.93	1.12	0.76	0.85	2.75	9561	863	4	116	0	0	0	logfile
✔	8JiQ	36324	2025-02-13	2023-05-27	3.4	3.86	3.37	3.7	0.003	0.64	0.0	0.04	15.17	0.00	2.202	10.10	2.47	4.1	95.5	0.4	-0.03	0.82	0.80	2.08	3.7	0.003	0.62	0.0	0.04	16.12	0.00	2.481	7.87	1.23	4.0	96.0	0.0	0.36	0.42	0.82	0.83	1.63	8707	1134	6	0	0	0	0	logfile
✘	8iQ4	35657	2025-02-12	2023-03-15	2.7	3.02	2.81	3.1	0.003	0.60	0.0	0.04	14.91	0.00	2.218	5.45	0.58	4.0	96.0	0.0	1.43	0.69	0.83	4.47	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7080	954	6	0	1	0	0	logfile

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