Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	1oED	1044	2025-02-11	2003-03-24	4.0	3.94	—	10.4	0.014	2.29	3.0	0.10	17.23	0.01	1.183	224.94	19.76	5.2	92.7	2.1	-3.67	0.39	0.18	—	9.0	0.004	1.06	0.0	0.05	16.10	0.01	2.547	22.89	1.91	2.3	97.7	0.0	1.50	3.42	0.64	0.46	—	4926	636	5	0	0	0	0	logfile
✔	8SZ7	40902	2025-02-11	2023-05-27	2.84	3.08	2.87	3.6	0.003	0.46	0.0	0.04	9.67	0.00	2.393	1.99	0.00	0.9	99.1	0.0	1.11	0.17	0.20	2.22	3.2	0.005	0.72	0.0	0.04	12.89	0.00	2.460	4.23	1.36	3.4	96.6	0.0	1.82	1.13	0.44	0.68	1.14	4026	240	1	0	0	0	2021	logfile
✔	7oTi	13060	2025-02-13	2021-06-10	4.2	4.80	—	7.9	0.014	1.99	12.0	0.10	16.95	0.02	2.507	0.59	4.71	10.8	87.9	1.4	-3.63	0.36	0.23	—	4.9	0.004	0.92	0.0	0.05	14.38	0.01	2.417	21.71	0.00	7.9	91.8	0.3	-1.88	1.77	0.53	0.53	—	9171	1182	1	0	0	0	0	logfile
✔	8FZR	29638	2025-02-11	2023-01-29	3.6	5.09	4.10	4.1	0.002	0.48	0.0	0.03	20.14	0.00	2.234	12.34	6.97	4.6	94.4	1.0	-1.87	0.52	0.24	0.50	4.2	0.003	0.68	0.0	0.04	21.91	0.00	2.493	16.23	5.62	6.8	93.0	0.2	-1.39	1.63	0.82	0.63	0.78	5711	503	3	77	1	0	0	logfile
✔	8X7Q	38107	2025-02-11	2023-11-24	2.7	2.32	2.42	3.3	0.014	1.60	0.0	0.08	14.72	0.01	2.275	17.91	0.00	9.4	90.6	0.0	-4.07	0.18	0.24	0.92	3.0	0.003	0.72	0.0	0.05	17.93	0.00	2.615	10.27	5.79	4.2	95.8	0.0	-3.46	2.16	0.49	0.86	2.95	3936	550	14	0	4	0	0	logfile
✔	7BZX	30262	2025-02-11	2020-04-28	4.0	4.19	—	3.2	0.019	2.22	9.0	0.12	8.56	0.01	2.485	2.40	0.00	6.6	92.1	1.3	-2.90	0.47	0.25	—	2.9	0.003	0.90	0.0	0.05	6.50	0.00	2.332	7.31	0.00	15.1	84.9	0.0	-3.17	2.86	0.74	0.56	—	5652	1154	2	0	0	0	0	logfile
✔	7JSH	22454	2025-02-12	2020-08-14	4.4	7.07	—	17.0	0.001	0.20	0.0	0.02	8.81	0.00	2.581	0.00	0.00	13.1	83.7	3.2	-3.27	0.49	0.25	—	5.3	0.007	1.51	0.0	0.06	14.49	0.01	2.198	18.51	0.00	30.2	69.4	0.4	-5.64	6.11	0.72	0.66	—	7916	1904	8	15	0	0	0	logfile
✔	8SZ4	40901	2025-02-11	2023-05-26	2.86	3.08	2.87	3.2	0.003	0.57	0.0	0.04	9.74	0.00	2.230	2.07	0.00	2.0	98.0	0.0	-0.45	0.18	0.26	2.84	3.1	0.003	0.65	0.0	0.04	13.60	0.00	2.509	4.38	1.67	2.4	97.6	0.0	1.63	2.05	0.44	0.68	1.14	4346	259	1	0	0	0	2184	logfile
✔	3KTT	5148	2025-02-11	2009-11-25	4.0	2.33	—	4.5	0.020	2.86	20.0	0.20	15.20	0.01	1.652	179.94	7.82	6.3	89.4	4.3	-0.59	0.27	0.28	—	2.1	0.004	1.11	0.0	0.05	17.41	0.01	2.387	26.71	4.40	9.6	89.4	1.0	-2.28	1.66	0.31	0.40	—	3855	513	1	0	0	0	0	logfile
✔	8CR2	16802	2025-02-12	2023-03-07	4.2	4.42	4.19	5.1	0.004	1.07	1.0	0.06	13.24	0.01	1.914	20.12	0.00	5.8	94.2	0.0	-3.18	0.41	0.29	—	4.4	0.003	0.83	0.0	0.05	13.81	0.00	2.353	11.87	0.00	3.2	96.8	0.0	0.62	1.55	0.63	0.66	—	6838	855	5	0	1	0	0	logfile
✔	8RHB	19174	2025-02-13	2023-12-15	3.0	3.79	2.99	5.0	0.005	0.67	0.0	0.05	17.12	0.00	1.818	7.61	0.00	3.0	97.0	0.0	0.48	0.44	0.30	0.58	3.6	0.007	1.15	1.0	0.06	17.21	0.00	1.867	22.67	2.42	3.0	97.0	0.0	-0.33	1.61	0.66	0.78	0.91	9539	1196	9	1	5	0	0	logfile
✔	8RNU	19395	2025-02-14	2024-01-11	3.4	5.41	2.49	3.9	0.010	1.04	0.0	0.05	17.19	0.01	2.104	28.22	0.32	10.1	89.9	0.0	-2.17	0.62	0.30	0.31	3.9	0.004	0.77	0.0	0.05	17.91	0.01	2.426	24.31	3.45	10.2	89.8	0.0	-2.07	0.65	0.65	0.39	0.44	10848	1320	12	0	0	0	0	logfile
✔	7TMC	25995	2025-02-11	2022-01-19	3.25	3.24	2.95	4.2	0.005	0.72	0.0	0.07	18.02	0.01	2.152	13.78	0.00	9.5	90.5	0.0	-4.08	0.21	0.31	-0.39	3.5	0.004	0.82	0.0	0.06	16.96	0.01	2.414	12.17	3.70	11.0	89.0	0.0	-4.10	1.82	0.34	0.75	2.99	3426	405	6	0	12	0	0	logfile
✔	8ENQ	28276	2025-02-11	2022-09-30	3.6	3.97	3.73	4.4	0.004	0.77	0.0	0.05	13.93	0.00	2.257	14.40	0.00	0.3	99.7	0.0	1.45	0.35	0.32	1.15	4.2	0.004	0.92	0.0	0.05	15.78	0.00	2.503	22.21	1.87	10.7	89.3	0.0	-3.91	1.95	0.47	0.52	3.27	5593	777	7	0	0	0	0	logfile
✔	6HD5	0201	2025-02-14	2018-08-17	4.8	6.01	—	5.9	0.001	0.40	0.0	0.03	8.70	0.00	2.289	4.36	0.10	10.5	88.4	1.1	-1.81	0.36	0.32	—	5.9	0.004	0.83	0.0	0.04	12.18	0.00	2.340	19.65	0.00	7.4	92.5	0.1	-0.91	2.10	0.46	0.58	—	9707	1234	3	0	0	0	0	logfile
✔	8F7J	28905	2025-02-11	2022-11-18	4.32	4.45	4.63	8.9	0.005	0.92	0.0	0.05	15.44	0.01	2.282	15.12	0.26	5.7	94.3	0.0	-3.18	0.38	0.32	—	4.3	0.003	0.70	0.0	0.04	14.24	0.01	2.194	15.85	0.26	5.4	94.6	0.0	-3.05	2.26	0.44	0.42	—	3321	407	1	0	0	0	0	logfile
✔	6YW7	10960	2025-02-11	2020-04-29	4.5	5.21	—	4.7	0.021	3.50	0.0	0.09	8.08	0.01	2.034	2.17	0.00	4.5	94.7	0.9	-1.45	0.57	0.32	—	4.6	0.002	0.85	0.0	0.02	5.56	0.00	2.562	8.29	0.00	8.7	91.1	0.2	-1.68	4.73	0.80	0.64	—	5426	1788	9	0	2	0	0	logfile
✔	6oFJ	20047	2025-02-14	2019-03-30	4.5	5.60	3.27	7.8	0.007	0.96	0.0	0.05	15.74	0.01	2.135	3.69	0.00	7.1	92.9	0.0	-4.36	0.48	0.33	—	7.8	0.003	0.62	0.0	0.04	13.93	0.01	2.028	10.58	0.00	9.4	90.6	0.0	-2.54	1.29	0.57	0.56	—	10310	650	2	0	0	0	5142	logfile
✔	8UUZ	42602	2025-02-11	2023-11-02	3.77	4.50	3.78	8.8	0.003	0.73	0.0	0.04	13.06	0.00	2.213	38.18	12.61	6.6	93.4	0.0	-1.81	0.61	0.33	0.27	8.8	0.004	0.86	0.0	0.05	16.44	0.00	2.571	27.43	4.78	5.6	94.4	0.0	-2.39	1.28	0.76	0.59	1.07	2258	300	2	0	0	0	0	logfile
✔	7N9Y	24264	2025-02-12	2021-06-18	4.8	4.30	—	2.2	0.019	1.07	0.0	0.00	6.04	0.00	2.538	0.59	0.00	8.5	91.1	0.3	-1.98	0.49	0.33	—	2.3	0.004	1.22	0.0	0.00	6.48	0.00	2.505	15.16	0.00	26.4	73.1	0.5	-4.83	3.35	0.52	0.31	—	7515	2505	2	0	0	0	0	logfile

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