Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8QSN	18637	2025-02-11	2023-10-10	3.54	4.23	3.52	4.0	0.002	0.48	0.0	0.03	10.37	0.00	2.269	4.15	3.75	3.5	96.5	0.0	2.22	0.55	0.76	0.70	4.0	0.003	0.91	0.0	0.05	15.75	0.00	2.482	15.76	2.95	3.5	96.5	0.0	1.66	1.46	0.56	0.77	1.37	3579	464	1	0	0	0	0	logfile
✔	7RX5	24725	2025-02-13	2021-08-21	3.4	3.65	—	3.6	0.002	0.25	0.0	0.03	11.98	0.00	2.288	5.05	0.00	0.0	100.0	0.0	4.54	0.70	0.85	3.58	3.6	0.002	0.32	0.0	0.03	12.78	0.00	2.693	2.28	0.00	0.0	100.0	0.0	5.58	0.18	0.70	0.87	2.85	9120	1160	40	0	0	0	0	logfile
✔	8K1J	36793	2025-02-11	2023-07-11	3.0	3.30	3.06	3.4	0.001	0.34	0.0	0.03	13.84	0.00	2.296	2.67	0.00	0.4	99.6	0.0	5.90	0.58	0.77	0.99	3.3	0.003	0.51	0.0	0.04	14.96	0.00	2.504	2.79	1.23	2.1	97.9	0.0	4.63	0.59	0.62	0.83	1.10	4069	484	6	0	11	12	0	logfile
✔	8G3K	29700	2025-02-10	2023-02-08	2.2	2.34	2.21	2.3	0.002	0.36	0.0	0.03	9.98	0.00	2.348	3.50	0.00	0.7	99.3	0.0	5.07	0.46	0.82	4.79	2.3	0.002	0.47	0.0	0.03	16.63	0.00	2.600	4.59	1.23	0.4	99.6	0.0	4.75	1.11	0.46	0.83	4.89	2244	285	2	0	0	0	0	logfile
✔	7Y5W	33627	2025-02-13	2022-06-17	3.5	4.54	3.56	3.7	0.003	0.53	0.0	0.03	27.56	0.00	2.102	12.41	0.00	2.0	98.0	0.0	2.53	0.81	0.70	0.94	3.7	0.007	0.87	0.0	0.04	29.06	0.01	2.018	22.89	5.06	2.5	97.5	0.0	1.44	0.94	0.90	0.86	0.98	8811	579	10	202	0	0	0	logfile
✔	8iBY	35349	2025-02-14	2023-02-10	3.47	3.81	3.66	3.7	0.003	0.62	0.0	0.03	23.52	0.01	2.187	11.40	0.00	4.6	95.3	0.1	0.06	0.77	0.76	1.66	3.7	0.002	0.60	0.0	0.04	23.54	0.00	2.196	9.46	3.43	3.8	96.1	0.1	0.34	1.60	0.76	0.77	1.56	10503	793	3	198	1	0	0	logfile
✔	8E2J	27838	2025-02-11	2022-08-15	3.44	3.67	3.24	3.4	0.003	0.63	0.0	0.03	15.86	0.01	2.271	3.43	2.70	2.3	97.7	0.0	-0.36	0.44	0.67	0.61	3.4	0.003	0.52	0.0	0.03	17.70	0.00	2.278	10.44	2.03	0.9	99.1	0.0	3.96	1.69	0.45	0.67	0.86	6012	346	4	0	114	0	2694	logfile
✔	8EDL	28035	2025-02-10	2022-09-05	3.7	3.30	3.60	3.1	0.002	0.52	0.0	0.03	11.07	0.00	2.307	6.09	0.00	2.1	97.7	0.3	2.83	0.62	0.61	-0.09	3.1	0.003	0.59	0.0	0.03	13.42	0.00	2.535	6.09	2.31	2.6	97.4	0.0	3.40	1.12	0.68	0.73	2.60	2470	395	1	0	0	0	0	logfile
✔	8SRo	40736	2025-02-11	2023-05-05	3.3	3.43	3.26	3.4	0.003	0.56	0.0	0.03	26.26	0.02	2.348	8.41	0.90	5.3	94.7	0.0	-1.78	0.66	0.78	3.49	3.4	0.004	0.57	0.0	0.03	25.91	0.00	2.543	7.30	2.69	6.5	93.5	0.0	-0.70	0.91	0.65	0.78	2.83	4132	345	8	72	0	0	0	logfile
✔	8SRP	40737	2025-02-13	2023-05-05	3.7	3.93	3.67	3.7	0.004	0.66	0.0	0.03	28.75	0.01	2.262	9.34	0.47	6.5	93.5	0.0	-1.47	0.74	0.72	2.00	3.7	0.004	0.63	0.0	0.03	28.52	0.00	2.482	10.13	3.27	7.6	92.4	0.0	-0.44	1.24	0.74	0.72	2.86	9516	849	14	214	0	0	0	logfile
✔	6XMF	22257	2025-02-12	2020-06-30	3.1	3.28	—	3.3	0.002	0.56	0.0	0.03	21.16	0.00	2.246	8.60	0.00	6.8	93.2	0.0	-1.78	0.68	0.71	2.25	3.2	0.003	0.64	0.0	0.04	21.62	0.00	2.519	11.86	3.17	9.6	90.4	0.0	-0.64	0.46	0.71	0.76	2.88	7382	627	3	109	1	0	0	logfile
✔	6PoM	20416	2025-02-11	2019-07-04	4.9	5.01	—	5.0	0.003	0.64	0.0	0.03	25.63	0.00	2.075	3.10	0.00	0.0	0.0	0.0	—	0.61	0.64	—	5.0	0.006	0.94	0.0	0.05	26.62	0.01	1.998	32.05	0.00	0.0	0.0	0.0	—	1.73	0.75	0.79	—	4937	0	2	230	0	0	0	logfile
✔	7LQF	23484	2025-02-11	2021-02-13	3.8	3.13	—	4.0	0.016	1.46	0.0	0.03	18.37	0.00	2.258	22.81	2.08	0.0	100.0	0.0	-4.77	0.59	0.78	4.63	3.2	0.154	6.31	245.0	0.42	26.85	0.03	1.673	200.95	26.56	55.5	42.6	2.0	-9.07	2.04	0.69	0.87	3.17	5376	512	64	0	0	0	0	logfile
✔	7ZiR	14738	2025-02-10	2022-04-08	2.5	2.51	2.04	2.7	0.002	0.34	0.0	0.03	9.02	0.00	2.317	1.65	0.00	2.0	98.0	0.0	-3.82	0.48	0.90	7.46	2.7	0.002	0.43	0.0	0.04	12.20	0.00	2.664	0.55	0.00	2.9	97.1	0.0	-3.73	1.02	0.51	0.93	7.87	2120	255	10	0	0	50	0	logfile
✔	8K1Q	36799	2025-02-11	2023-07-11	3.68	3.98	3.58	3.9	0.004	0.50	0.0	0.03	14.13	0.00	2.337	4.50	0.25	1.3	98.7	0.0	4.91	0.59	0.76	1.71	4.0	0.003	0.56	0.0	0.04	15.94	0.00	2.540	2.31	2.94	1.7	98.3	0.0	4.67	2.32	0.61	0.81	1.82	4058	484	6	0	8	4	0	logfile
✔	8SZA	40905	2025-02-11	2023-05-29	2.75	3.32	2.81	3.4	0.003	0.65	0.0	0.03	15.14	0.00	2.185	8.19	0.98	0.3	99.7	0.0	2.12	0.50	0.78	1.28	3.4	0.003	0.60	0.0	0.04	15.64	0.00	2.569	8.99	1.57	0.2	99.8	0.0	3.61	0.45	0.49	0.77	1.51	4800	606	11	0	6	0	0	logfile
✔	8E2H	27836	2025-02-14	2022-08-15	2.3	2.41	2.27	2.4	0.003	0.60	0.0	0.03	15.28	0.00	1.980	6.85	0.52	1.1	98.9	0.0	1.61	0.65	0.82	4.36	2.4	0.004	0.59	0.0	0.03	15.76	0.01	2.329	5.50	2.08	1.0	99.0	0.0	2.61	0.94	0.65	0.83	4.00	10412	656	2	0	0	40	5280	logfile
✔	7XHT	33198	2025-02-12	2022-04-10	2.55	2.77	2.54	2.8	0.003	0.68	0.0	0.03	21.15	0.00	2.014	6.29	0.00	1.8	98.2	0.0	0.35	0.69	0.85	5.47	2.8	0.003	0.57	0.0	0.03	21.69	0.00	2.012	4.59	2.34	2.3	97.7	0.0	0.86	0.35	0.65	0.85	4.77	7839	395	6	220	3	0	0	logfile
✔	8AXB	15698	2025-02-12	2022-08-31	2.87	3.44	2.88	3.1	0.004	0.62	0.0	0.03	23.87	0.01	2.036	18.05	0.53	5.9	94.1	0.0	-0.94	0.79	0.71	1.53	3.1	0.004	0.66	0.0	0.03	23.59	0.00	2.032	15.75	2.91	3.3	96.7	0.0	-0.18	0.55	0.80	0.74	1.07	8383	430	3	230	0	2	0	logfile
✔	9iRX	60824	2025-02-11	2024-07-16	3.0	3.17	2.86	3.2	0.009	0.58	0.0	0.03	11.28	0.00	2.197	7.04	0.56	2.4	97.6	0.0	2.29	0.65	0.82	3.59	3.2	0.003	0.66	0.0	0.04	15.02	0.00	2.642	8.17	2.22	1.5	98.5	0.0	2.26	0.36	0.61	0.82	2.77	3509	469	2	0	1	0	0	logfile

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