Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8SEH	40411	2025-02-11	2023-04-10	2.9	2.68	2.71	3.1	0.026	2.09	10.0	0.12	10.93	0.01	2.507	0.00	0.00	7.0	93.0	0.0	-2.29	0.52	0.80	4.20	3.0	0.003	0.63	0.0	0.05	16.87	0.00	2.612	6.07	2.03	5.8	94.2	0.0	-2.98	1.28	0.44	0.81	2.61	5570	730	10	0	0	0	0	logfile
✔	7QJY	14026	2025-02-11	2021-12-17	3.14	2.93	3.08	3.1	0.011	1.87	0.0	0.09	12.32	0.01	2.519	0.00	0.25	5.7	94.3	0.0	-2.50	0.38	0.82	5.27	3.1	0.004	0.71	0.0	0.05	17.05	0.00	2.476	4.55	2.53	1.8	98.2	0.0	-2.33	2.60	0.35	0.83	3.86	3444	450	6	0	0	0	0	logfile
✔	7QVF	14176	2025-02-11	2022-01-21	3.64	3.54	3.42	4.1	0.012	2.10	22.0	0.12	15.51	0.01	2.525	0.00	0.53	6.0	94.0	0.0	-2.41	0.43	0.77	3.90	3.6	0.004	0.78	0.0	0.05	16.93	0.00	2.567	11.37	3.57	6.6	93.4	0.0	-2.44	3.83	0.39	0.73	3.51	6516	810	6	0	0	0	0	logfile
✔	8oRE	17121	2025-02-11	2023-04-13	2.5	2.67	2.44	2.7	0.011	2.09	7.0	0.14	10.93	0.01	2.570	0.00	0.00	8.0	92.0	0.0	-2.10	0.32	0.74	5.29	2.7	0.003	0.66	0.0	0.05	17.34	0.00	2.527	1.66	2.49	6.7	93.3	0.0	-2.05	3.44	0.36	0.80	4.77	3615	231	3	0	0	0	1845	logfile
✔	7QK1	14028	2025-02-11	2021-12-17	3.03	3.20	2.13	3.2	0.011	1.97	2.0	0.11	12.98	0.01	2.502	0.00	0.00	5.5	94.5	0.0	-1.61	0.48	0.84	4.10	3.2	0.007	0.80	0.0	0.05	16.81	0.01	2.528	4.84	3.03	4.1	95.9	0.0	-1.74	2.22	0.42	0.84	4.06	3444	450	6	0	0	0	0	logfile
✔	6CoZ	7545	2025-02-10	2018-03-13	3.36	4.78	—	4.7	0.009	1.71	0.0	0.07	5.63	0.01	2.541	0.00	0.00	3.2	96.2	0.6	-2.49	0.78	0.68	—	4.4	0.003	0.80	0.0	0.04	5.39	0.00	2.616	1.77	0.00	8.0	92.0	0.0	-2.12	1.59	0.82	0.77	—	1586	320	2	0	0	0	0	logfile
✘	6UXA	20931	2025-02-14	2019-11-07	4.5	5.05	—	6.0	0.005	0.77	0.0	0.06	4.56	0.00	2.628	0.00	0.00	3.8	96.2	0.0	-2.56	0.71	0.63	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10344	2104	8	0	0	0	0	logfile
✔	8Q8D	18251	2025-02-12	2023-08-18	3.04	2.88	2.87	3.0	0.011	1.85	2.0	0.08	13.26	0.01	2.504	0.00	0.00	2.9	97.1	0.0	-1.65	0.32	0.75	5.97	3.0	0.003	0.55	0.0	0.05	16.03	0.00	2.426	1.98	2.02	1.4	98.6	0.0	-1.21	1.55	0.39	0.87	6.03	7074	456	6	0	0	0	3606	logfile
✔	8VYB	43655	2025-02-12	2024-02-07	3.37	3.91	3.30	3.7	0.008	1.05	0.0	0.07	15.54	0.01	2.344	0.00	0.00	5.4	94.6	0.0	-1.28	0.70	0.63	1.89	3.7	0.003	0.66	0.0	0.04	16.85	0.00	2.557	7.33	2.37	4.3	95.7	0.0	-0.01	1.19	0.79	0.80	2.09	7249	920	2	0	0	0	0	logfile
✔	7QL0	14059	2025-02-11	2021-12-19	3.13	2.96	2.97	3.1	0.011	1.87	0.0	0.09	12.06	0.01	2.510	0.00	0.00	4.0	96.0	0.0	-2.04	0.39	0.77	6.02	3.2	0.004	0.65	0.0	0.05	14.63	0.00	2.421	4.07	1.11	1.0	99.0	0.0	-2.14	1.55	0.41	0.84	6.23	6390	414	6	0	0	0	3258	logfile
✔	7QK3	14030	2025-02-10	2021-12-17	2.44	2.73	2.35	2.7	0.010	2.07	0.0	0.11	12.55	0.01	2.519	0.00	0.00	3.4	96.6	0.0	-3.04	0.38	0.77	5.65	2.7	0.004	0.75	0.0	0.05	16.67	0.00	2.527	4.01	0.00	2.8	97.2	0.0	-2.65	2.35	0.39	0.81	4.68	2742	183	3	0	0	0	1407	logfile
✔	7QL3	14062	2025-02-10	2021-12-19	3.32	3.47	3.01	3.5	0.011	2.01	8.0	0.11	12.27	0.01	2.489	0.00	0.00	7.7	92.3	0.0	-3.47	0.46	0.82	4.29	3.5	0.005	0.86	0.0	0.05	13.54	0.01	2.375	4.23	1.34	6.3	93.7	0.0	-2.84	1.12	0.43	0.83	4.87	3246	426	6	0	0	0	0	logfile
✔	7ADM	11731	2025-02-14	2020-09-15	3.5	3.77	3.57	3.8	0.013	1.98	3.0	0.11	15.37	0.02	2.582	0.00	0.73	11.9	88.1	0.0	-2.91	0.49	0.70	2.46	3.8	0.003	0.62	0.0	0.04	16.99	0.00	2.288	6.27	1.83	8.3	91.7	0.0	-1.50	1.84	0.49	0.69	2.34	9726	614	1	0	0	0	4799	logfile
✔	7UXU	26862	2025-02-13	2022-05-06	2.74	3.09	2.80	3.1	0.007	1.01	0.0	0.06	17.35	0.01	2.519	0.00	0.00	1.9	98.1	0.0	-0.46	0.58	0.88	5.36	3.0	0.003	0.55	0.0	0.04	17.21	0.00	2.542	0.57	0.41	2.3	97.7	0.0	0.70	1.30	0.54	0.86	4.14	8776	536	8	0	4	0	4268	logfile
✔	7JSH	22454	2025-02-12	2020-08-14	4.4	7.07	—	17.0	0.001	0.20	0.0	0.02	8.81	0.00	2.581	0.00	0.00	13.1	83.7	3.2	-3.27	0.49	0.25	—	5.3	0.007	1.51	0.0	0.06	14.49	0.01	2.198	18.51	0.00	30.2	69.4	0.4	-5.64	6.11	0.72	0.66	—	7916	1904	8	15	0	0	0	logfile
✔	7QKW	14055	2025-02-11	2021-12-19	2.32	1.74	2.60	2.3	0.010	1.93	1.0	0.10	13.53	0.01	2.534	0.00	0.00	5.4	94.6	0.0	-2.79	0.41	0.81	7.02	2.3	0.003	0.57	0.0	0.05	16.42	0.00	2.590	2.55	2.54	4.8	95.2	0.0	-2.97	1.30	0.42	0.85	6.06	4707	306	6	0	0	0	2439	logfile
✔	8Q9i	18282	2025-02-11	2023-08-20	2.56	2.01	2.38	2.2	0.011	1.80	0.0	0.08	11.44	0.01	2.520	0.00	0.00	3.8	96.2	0.0	-1.34	0.29	0.75	7.51	2.3	0.002	0.56	0.0	0.05	18.04	0.00	2.506	0.29	0.52	0.5	99.5	0.0	-1.55	4.58	0.38	0.86	7.37	3411	219	3	0	0	0	1740	logfile
✔	7QKG	14041	2025-02-10	2021-12-17	3.36	3.19	3.09	3.4	0.010	2.03	0.0	0.10	10.76	0.01	2.528	0.00	0.00	6.4	93.6	0.0	-1.98	0.38	0.80	4.23	3.5	0.003	0.58	0.0	0.05	14.17	0.00	2.630	1.62	0.00	3.8	96.2	0.0	-1.34	0.82	0.35	0.82	3.92	2469	162	3	0	0	0	1278	logfile
✔	7N9Q	24259	2025-02-12	2021-06-18	4.6	4.92	—	2.3	0.002	0.88	0.0	0.00	5.65	0.00	2.600	0.00	0.00	8.9	90.3	0.8	-1.59	0.79	0.69	—	2.6	0.006	1.47	0.0	0.00	7.94	0.00	2.432	35.79	0.00	28.5	70.6	1.0	-4.70	2.66	0.86	0.82	—	6945	2315	1	0	0	0	0	logfile
✔	8QCR	18333	2025-02-10	2023-08-28	2.75	2.70	2.59	2.9	0.011	1.78	0.0	0.08	9.60	0.01	2.505	0.00	0.00	3.0	97.0	0.0	-1.85	0.33	0.79	7.24	2.9	0.003	0.55	0.0	0.05	15.88	0.00	2.505	2.54	0.56	1.0	99.0	0.0	-0.50	1.38	0.40	0.88	7.24	3153	204	3	0	0	0	1608	logfile

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