Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7ZH6	14725	2025-02-11	2022-04-05	3.67	4.10	0.95	4.2	0.006	0.90	0.0	0.06	15.91	0.01	1.607	26.36	1.26	6.4	93.6	0.0	0.99	0.54	0.73	1.36	4.1	0.004	0.74	0.0	0.04	16.89	0.00	2.539	13.18	5.04	5.3	94.7	0.0	1.23	1.13	0.54	0.74	1.07	3771	478	2	0	1	0	0	logfile
✔	8XCS	38253	2025-02-11	2023-12-10	2.63	2.77	1.03	2.7	0.009	1.10	0.0	0.06	16.41	0.01	2.381	7.66	4.69	3.8	96.2	0.0	0.58	0.47	0.89	4.80	2.7	0.002	0.51	0.0	0.04	16.28	0.00	2.481	4.51	2.35	2.2	97.8	0.0	1.71	0.89	0.49	0.92	5.39	3360	418	2	0	3	20	0	logfile
✔	8XD6	38267	2025-02-11	2023-12-10	2.79	2.93	1.04	2.9	0.009	1.12	0.0	0.06	16.23	0.01	2.369	7.03	3.51	3.4	96.6	0.0	0.89	0.48	0.90	4.52	2.9	0.003	0.51	0.0	0.04	16.24	0.00	2.506	5.23	1.17	1.4	98.6	0.0	1.65	0.39	0.47	0.92	4.70	3402	419	2	0	4	44	0	logfile
✔	8XD1	38262	2025-02-11	2023-12-10	2.96	3.13	1.04	3.1	0.007	0.83	0.0	0.05	18.20	0.01	2.373	6.23	6.49	3.6	96.4	0.0	0.90	0.42	0.85	3.48	3.1	0.002	0.55	0.0	0.04	17.32	0.01	2.496	5.77	0.88	2.9	97.1	0.0	1.60	0.46	0.42	0.88	2.94	3307	416	2	0	1	9	0	logfile
✔	8iJA	35483	2025-02-13	2023-02-26	2.69	3.07	1.13	2.9	0.005	1.10	10.0	0.08	18.23	0.00	1.793	11.25	5.37	4.8	95.1	0.1	0.12	0.65	0.86	3.13	2.9	0.004	0.65	0.0	0.04	17.71	0.00	2.478	8.63	2.84	5.4	94.6	0.0	0.36	0.29	0.68	0.87	3.30	8845	1136	6	0	1	0	0	logfile
✔	8iJD	35485	2025-02-13	2023-02-27	3.25	3.91	1.15	3.7	0.008	1.20	10.0	0.07	16.92	0.01	1.812	17.05	2.30	5.8	94.2	0.0	-0.43	0.69	0.82	1.82	3.7	0.006	1.08	1.0	0.05	16.84	0.00	2.222	13.77	3.83	4.9	95.0	0.1	0.21	0.93	0.71	0.86	1.90	8724	1136	6	0	1	0	0	logfile
✔	8SPB	40678	2025-02-11	2023-05-02	3.2	3.73	1.22	3.6	0.003	0.73	0.0	0.05	17.30	0.00	2.227	10.41	1.18	6.9	93.1	0.0	-1.37	0.55	0.77	1.49	3.6	0.004	0.71	0.0	0.04	18.16	0.00	2.474	12.50	3.95	6.5	93.3	0.1	-1.34	0.99	0.48	0.76	1.22	6726	828	6	0	0	0	0	logfile
✔	8iJ3	35463	2025-02-13	2023-02-24	3.28	3.69	1.23	3.6	0.004	1.08	12.0	0.08	17.30	0.01	2.107	7.58	1.71	5.2	94.8	0.0	-0.17	0.71	0.86	2.48	3.6	0.003	0.62	0.0	0.04	17.63	0.00	2.471	4.57	3.85	4.1	95.8	0.1	0.36	0.31	0.73	0.87	2.41	8772	1134	5	0	0	0	0	logfile
✔	9JSV	61784	2025-02-11	2024-10-01	1.79	2.00	1.27	1.9	0.013	1.78	0.0	0.08	11.54	0.01	2.696	1.18	1.39	5.5	94.5	0.0	-0.87	0.25	0.69	8.64	1.9	0.003	0.50	0.0	0.05	12.20	0.00	2.651	2.60	0.00	4.3	95.7	0.0	-0.94	0.61	0.49	0.93	8.50	4248	272	8	0	0	0	2104	logfile
✔	9JST	61782	2025-02-11	2024-10-01	1.79	1.95	1.31	1.9	0.012	1.74	0.0	0.08	10.67	0.01	2.662	1.17	0.00	4.9	94.7	0.4	-1.74	0.44	0.90	8.24	1.9	0.003	0.57	0.0	0.05	12.46	0.00	2.554	0.23	1.85	5.3	94.7	0.0	-1.67	0.73	0.46	0.93	7.15	4304	280	8	0	0	0	2128	logfile
✔	9JSX	61786	2025-02-11	2024-10-01	1.79	1.84	1.32	1.8	0.014	1.88	3.0	0.10	11.58	0.01	2.548	0.24	1.85	5.9	94.1	0.0	-0.91	0.22	0.58	8.50	1.8	0.003	0.53	0.0	0.05	12.47	0.00	2.679	4.26	0.00	5.5	94.5	0.0	-1.31	0.77	0.52	0.90	7.61	4248	272	8	0	0	0	2104	logfile
✔	8ZNG	60270	2025-02-11	2024-05-26	2.5	2.65	1.33	2.6	0.007	0.92	0.0	0.05	19.32	0.01	2.439	3.91	3.24	2.9	97.1	0.0	1.28	0.60	0.89	4.31	2.6	0.003	0.54	0.0	0.04	17.94	0.00	2.490	4.82	2.35	2.2	97.8	0.0	1.13	0.82	0.55	0.92	4.27	3347	416	2	0	2	16	0	logfile
✔	8ZNC	60267	2025-02-11	2024-05-26	2.41	2.55	1.33	2.5	0.007	0.97	0.0	0.05	19.34	0.01	2.408	6.47	1.76	2.4	97.6	0.0	0.66	0.53	0.90	3.96	2.5	0.003	0.54	0.0	0.04	19.21	0.00	2.452	5.27	1.18	1.7	98.3	0.0	1.33	1.17	0.49	0.90	4.15	3356	416	2	0	3	24	0	logfile
✔	8ZND	60268	2025-02-11	2024-05-26	2.53	2.67	1.34	2.6	0.007	0.93	0.0	0.05	15.60	0.01	2.392	3.48	0.88	1.7	98.3	0.0	0.95	0.58	0.90	4.78	2.6	0.002	0.50	0.0	0.04	16.84	0.00	2.439	3.79	0.88	1.7	98.3	0.0	1.50	0.83	0.53	0.92	4.22	3334	416	2	0	1	24	0	logfile
✔	9JSU	61783	2025-02-11	2024-10-01	1.79	2.07	1.34	1.9	0.012	1.70	0.0	0.07	11.86	0.01	2.673	0.50	0.00	2.8	97.2	0.0	-2.92	0.29	0.70	9.20	2.0	0.003	0.55	0.0	0.05	13.91	0.00	2.696	1.25	0.00	2.8	97.2	0.0	-3.10	1.17	0.52	0.92	8.57	4040	264	8	0	0	0	2000	logfile
✔	8XD0	38261	2025-02-11	2023-12-10	2.83	3.06	1.35	3.0	0.009	1.13	0.0	0.07	16.46	0.01	2.449	4.66	2.35	3.1	96.9	0.0	1.32	0.46	0.88	3.52	3.0	0.003	0.53	0.0	0.04	17.81	0.00	2.557	5.56	0.88	2.9	96.9	0.2	1.58	0.36	0.46	0.90	3.72	3357	417	2	0	2	14	0	logfile
✔	8XCW	38257	2025-02-11	2023-12-10	2.87	3.04	1.36	3.0	0.009	1.10	0.0	0.06	16.21	0.01	2.363	4.68	3.54	2.2	97.8	0.0	1.28	0.49	0.89	4.44	3.0	0.002	0.50	0.0	0.04	16.93	0.00	2.442	4.83	0.88	2.7	97.3	0.0	1.93	0.41	0.48	0.91	3.23	3347	416	2	0	2	17	0	logfile
✔	7YAT	33719	2025-02-11	2022-06-28	2.2	2.33	1.39	2.3	0.009	1.06	0.0	0.06	14.84	0.00	2.267	9.86	0.00	4.3	95.7	0.0	-4.79	0.61	0.88	7.98	2.3	0.003	0.75	0.0	0.05	15.01	0.00	2.685	11.09	1.82	4.9	95.1	0.0	-5.15	0.36	0.64	0.91	7.30	4129	600	45	0	0	25	0	logfile
✔	9D67	46588	2025-02-13	2024-08-14	2.87	3.10	1.45	3.2	0.003	0.60	0.0	0.04	16.10	0.01	2.143	4.81	0.00	2.1	97.9	0.0	0.93	0.52	0.74	2.24	3.2	0.003	0.58	0.0	0.04	16.23	0.00	2.173	8.67	2.08	1.3	98.7	0.0	1.72	1.18	0.64	0.81	2.62	9297	1218	9	0	15	3	0	logfile
✔	9JSW	61785	2025-02-11	2024-10-01	1.94	1.98	1.45	2.0	0.012	1.76	0.0	0.08	11.15	0.01	2.664	2.34	0.00	5.3	94.7	0.0	-2.00	0.43	0.88	7.60	2.0	0.003	0.63	0.0	0.05	13.96	0.01	2.490	0.23	0.46	4.5	95.5	0.0	-1.91	1.48	0.45	0.90	7.25	4304	280	8	0	0	0	2128	logfile

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