Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8oL5	16949	2025-02-10	2023-03-30	3.4	3.10	1.47	3.0	0.003	0.44	0.0	0.06	9.97	0.00	2.393	2.17	0.00	0.0	100.0	0.0	-0.75	0.53	0.87	5.76	3.0	0.005	0.51	0.0	0.05	15.75	0.00	2.533	4.78	3.91	2.1	97.9	0.0	-1.36	1.03	0.56	0.88	5.63	2260	310	10	0	0	0	0	logfile
✔	8BDZ	15995	2025-02-10	2022-10-20	3.13	3.37	1.52	3.1	0.002	0.52	0.0	0.04	12.41	0.00	2.264	6.23	0.00	3.0	97.0	0.0	2.26	0.48	0.84	2.77	3.1	0.003	0.63	0.0	0.04	14.42	0.00	2.509	6.39	1.64	2.0	98.0	0.0	2.99	0.44	0.49	0.86	2.77	3309	414	3	0	0	0	0	logfile
✔	7PY2	13708	2025-02-10	2021-10-08	2.59	2.64	1.54	2.7	0.015	1.83	0.0	0.08	17.26	0.01	2.423	1.71	2.00	9.1	90.9	0.0	-5.22	0.45	0.84	6.05	2.8	0.003	0.79	0.0	0.04	18.08	0.00	2.516	2.93	5.50	5.2	94.8	0.0	-3.91	1.39	0.49	0.87	6.12	2152	316	4	0	0	0	0	logfile
✔	8oL2	16942	2025-02-10	2023-03-30	3.0	3.17	1.54	3.3	0.004	0.45	0.0	0.05	9.08	0.00	2.275	10.00	4.35	3.4	96.6	0.0	-2.34	0.48	0.91	5.22	3.3	0.006	0.68	0.0	0.05	15.97	0.00	2.530	3.04	7.83	4.1	92.4	3.4	-3.10	0.44	0.43	0.90	6.05	2260	310	10	0	0	0	0	logfile
✔	7YNR	33969	2025-02-10	2022-07-31	2.9	2.79	1.55	3.2	0.003	0.46	0.0	0.05	10.05	0.00	2.424	7.49	0.00	1.7	98.3	0.0	-3.30	0.41	0.87	6.76	3.2	0.003	0.47	0.0	0.05	12.92	0.00	2.618	3.46	0.00	4.2	95.8	0.0	-1.92	0.22	0.41	0.88	5.75	2526	366	6	0	0	0	0	logfile
✔	8BER	16009	2025-02-10	2022-10-21	4.0	4.97	1.55	3.9	0.003	0.61	0.0	0.04	12.68	0.00	2.214	12.92	0.00	4.0	96.0	0.0	2.47	0.55	0.79	—	3.8	0.003	0.67	0.0	0.04	14.43	0.00	2.436	8.21	0.82	4.7	95.3	0.0	2.79	1.18	0.54	0.81	—	3309	414	3	0	0	0	0	logfile
✔	8ACB	15345	2025-02-10	2022-07-05	2.6	2.88	1.65	2.9	0.004	0.71	0.0	0.08	15.24	0.00	2.257	7.47	0.00	7.8	92.2	0.0	-0.81	0.21	0.81	4.10	2.9	0.004	0.64	0.0	0.04	18.06	0.00	2.574	4.88	2.84	9.6	90.4	0.0	-0.58	1.22	0.20	0.83	3.79	1815	220	2	5	0	0	0	logfile
✔	7Xo3	33335	2025-02-10	2022-04-30	2.6	2.32	1.68	2.7	0.002	0.41	0.0	0.05	12.37	0.00	2.223	4.70	0.00	8.2	91.8	0.0	-3.31	0.45	0.81	5.78	2.6	0.005	0.62	0.0	0.05	16.17	0.00	2.630	1.50	1.89	15.0	85.0	0.0	-1.91	0.39	0.50	0.85	5.72	2598	378	6	0	0	0	0	logfile
✔	8GBR	29920	2025-02-11	2023-02-28	3.4	3.85	1.72	3.9	0.004	0.59	0.0	0.05	13.84	0.01	2.120	3.17	0.00	1.1	98.9	0.0	-2.35	0.56	0.83	4.22	4.0	0.005	0.74	0.0	0.05	13.98	0.00	2.539	6.34	4.05	7.6	92.4	0.0	-2.76	2.30	0.48	0.75	4.17	3630	465	5	0	0	0	0	logfile
✔	6MST	9232	2025-02-11	2018-10-18	2.7	2.92	1.72	2.8	0.006	0.85	0.0	0.05	7.68	0.00	2.294	1.43	0.00	1.9	98.1	0.0	-4.58	0.73	0.90	7.42	2.9	0.004	0.51	0.0	0.04	15.57	0.00	2.625	4.50	1.97	2.4	97.6	0.0	-3.65	1.17	0.67	0.91	6.96	5172	648	12	0	0	0	0	logfile
✔	8P79	17522	2025-02-11	2023-05-30	1.7	1.76	1.73	1.8	0.014	1.73	0.0	0.08	14.30	0.01	2.251	3.34	0.90	2.1	97.7	0.2	-1.48	0.63	0.75	6.80	1.8	0.004	0.67	0.0	0.04	15.95	0.00	2.582	6.00	0.72	1.3	98.5	0.2	1.78	1.23	0.68	0.77	6.48	5256	630	6	0	1	180	0	logfile
✔	8oL3	16944	2025-02-11	2023-03-30	3.5	3.67	1.73	4.2	0.009	0.67	0.0	0.06	9.52	0.01	2.263	7.26	0.00	0.0	100.0	0.0	-0.18	0.42	0.77	3.49	4.2	0.003	0.48	0.0	0.06	16.21	0.00	2.589	11.90	2.80	9.0	91.0	0.0	-0.92	0.93	0.33	0.69	4.73	4970	330	10	0	0	0	2500	logfile
✔	7YK8	33890	2025-02-10	2022-07-22	2.8	2.62	1.74	2.8	0.005	0.66	0.0	0.06	11.56	0.00	2.465	18.20	0.00	8.5	91.5	0.0	-3.55	0.46	0.82	1.92	2.8	0.003	0.63	0.0	0.05	16.97	0.00	2.614	7.53	10.26	8.5	91.5	0.0	-2.89	1.14	0.43	0.82	1.95	3108	450	12	0	0	0	0	logfile
✔	7XJX	33236	2025-02-10	2022-04-18	2.7	2.78	1.76	2.9	0.008	0.81	0.0	0.06	12.77	0.00	2.438	12.63	0.00	16.4	83.6	0.0	-5.02	0.48	0.81	4.92	2.9	0.003	0.68	0.0	0.05	14.44	0.00	2.421	7.06	4.07	9.8	90.2	0.0	-3.24	1.14	0.44	0.80	5.19	2628	378	6	0	0	0	0	logfile
✔	7EFC	31083	2025-02-11	2021-03-21	1.7	1.76	1.76	1.9	0.032	3.16	16.0	0.09	14.88	0.02	0.001	2.15	2.15	2.5	96.6	0.8	-0.84	0.75	0.84	6.42	1.9	0.005	0.82	0.0	0.05	14.74	0.00	2.549	6.44	0.27	4.4	95.6	0.0	-0.14	0.93	0.80	0.85	6.60	4004	480	8	0	4	156	0	logfile
✔	8A4L	15148	2025-02-12	2022-06-12	2.68	2.73	1.77	2.8	0.004	0.65	0.0	0.05	13.43	0.00	2.385	10.11	0.00	0.0	100.0	0.0	-3.33	0.52	0.85	5.71	2.8	0.005	0.62	0.0	0.05	17.41	0.00	2.584	8.47	4.10	3.3	96.7	0.0	-3.64	1.16	0.53	0.87	5.69	7755	1125	15	0	0	0	0	logfile
✔	8Q98	18271	2025-02-12	2023-08-20	1.75	1.75	1.77	1.8	0.011	1.66	0.0	0.07	9.83	0.01	2.543	0.00	0.00	0.5	99.5	0.0	-0.80	0.22	0.65	8.64	1.8	0.002	0.53	0.0	0.05	15.06	0.00	2.501	1.14	0.51	0.9	99.1	0.0	-0.39	1.18	0.43	0.90	7.96	7032	450	6	0	0	0	3588	logfile
✔	6R4R	4727	2025-02-11	2019-03-23	3.4	3.01	1.77	3.8	0.008	1.43	0.0	0.08	10.87	0.01	2.308	6.73	0.00	12.0	88.0	0.0	-5.16	0.32	0.64	5.08	3.6	0.005	0.83	0.0	0.05	16.94	0.00	2.529	14.30	4.76	9.3	90.7	0.0	-4.68	1.38	0.32	0.67	4.06	4312	539	7	0	0	0	0	logfile
✔	8oVK	17218	2025-02-10	2023-04-26	2.88	3.04	1.81	3.2	0.012	1.80	0.0	0.11	14.99	0.01	2.386	4.35	12.90	5.3	94.7	0.0	-1.83	0.53	0.84	5.68	3.1	0.006	0.69	0.0	0.05	18.43	0.00	2.545	8.70	4.84	3.2	96.8	0.0	-2.93	0.63	0.53	0.86	6.09	3060	400	10	0	0	0	0	logfile
✔	7EFD	31084	2025-02-11	2021-03-21	1.77	1.78	1.82	1.9	0.033	3.16	12.0	0.09	15.32	0.02	0.001	1.61	2.15	1.7	97.5	0.8	-0.54	0.74	0.82	5.75	1.9	0.005	0.80	0.0	0.05	14.80	0.00	2.552	4.70	0.27	3.4	96.0	0.6	0.76	0.56	0.80	0.84	6.40	4004	480	8	0	4	156	0	logfile

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