Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8Z7G	39813	2025-02-14	2024-04-20	3.06	2.65	3.17	1.3	0.003	0.41	0.0	0.04	9.13	0.00	2.270	4.24	2.72	2.6	97.4	0.0	-0.26	0.90	0.85	2.66	1.3	0.006	0.96	1.0	0.05	12.95	0.00	2.064	11.06	1.63	5.2	94.7	0.1	1.01	0.66	0.91	0.88	2.35	10362	1329	6	0	18	0	0	logfile
✔	7oTo	13063	2025-02-14	2021-06-10	3.4	2.27	—	1.3	0.013	1.84	0.0	0.11	15.72	0.01	1.799	3.86	0.00	1.5	98.5	0.0	2.59	0.76	0.74	1.63	1.3	0.003	0.63	0.0	0.04	17.51	0.00	2.004	6.37	2.58	2.1	97.8	0.1	1.79	0.72	0.79	0.78	1.33	10333	1313	4	0	4	0	0	logfile
✔	9MMV	48404	2025-02-11	2024-12-20	3.79	2.98	3.76	1.4	0.004	0.81	0.0	0.05	15.10	0.01	1.340	10.87	1.08	3.4	96.2	0.4	1.43	0.89	0.84	2.37	1.5	0.005	0.70	0.0	0.04	15.12	0.00	2.507	6.82	4.85	5.0	94.9	0.1	0.78	0.60	0.90	0.84	2.14	4968	837	4	0	0	0	0	logfile
✔	8Z7B	39811	2025-02-14	2024-04-19	3.3	2.94	3.27	1.4	0.003	0.47	0.0	0.04	13.47	0.00	2.279	5.18	2.96	2.9	97.1	0.0	-2.05	0.93	0.88	3.76	1.4	0.004	0.73	0.0	0.05	13.64	0.00	2.497	6.67	2.66	4.2	95.8	0.0	-0.04	1.96	0.95	0.92	3.22	9580	1145	13	0	24	0	0	logfile
✘	7T2G	25612	2025-02-12	2021-12-04	2.5	1.71	—	1.4	0.007	0.88	0.0	0.05	12.03	0.01	2.214	13.39	1.00	3.5	96.5	0.0	0.61	0.80	0.81	5.15	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6922	898	5	0	3	8	0	logfile
✔	8Z7L	39819	2025-02-11	2024-04-20	3.42	2.85	3.35	1.4	0.002	0.45	0.0	0.04	8.76	0.00	2.324	6.07	4.12	4.9	95.1	0.0	-2.92	0.86	0.86	3.47	1.4	0.004	0.69	0.0	0.05	13.26	0.00	2.397	7.42	4.38	5.0	95.0	0.0	-1.21	0.67	0.87	0.90	3.32	6774	843	9	0	12	0	0	logfile
✔	7N5G	24189	2025-02-10	2021-06-05	2.4	2.16	2.42	1.5	0.022	1.51	0.0	0.09	10.57	0.01	2.386	0.17	0.00	0.8	99.2	0.0	1.84	0.40	0.79	3.64	1.8	0.004	0.58	0.0	0.04	16.22	0.00	2.381	3.41	3.58	1.4	98.6	0.0	3.23	0.57	0.39	0.81	3.11	2926	371	2	0	1	0	0	logfile
✔	8iKJ	35514	2025-02-11	2023-02-28	3.2	2.32	—	1.5	0.005	0.70	0.0	0.08	12.44	0.01	2.162	5.92	0.00	3.0	97.0	0.0	1.60	0.77	0.75	2.35	1.4	0.006	1.28	1.0	0.04	13.74	0.00	2.395	9.00	1.54	2.5	97.5	0.0	1.42	1.06	0.79	0.79	2.18	4200	532	2	0	3	0	0	logfile
✔	8JAF	36126	2025-02-11	2023-05-05	3.1	2.18	3.07	1.5	0.008	0.97	0.0	0.05	12.50	0.01	2.237	17.42	0.87	7.3	92.7	0.0	-2.04	0.64	0.56	4.02	1.9	0.003	0.68	0.0	0.04	13.70	0.01	2.361	8.23	1.45	5.0	95.0	0.0	-1.33	0.92	0.66	0.57	2.41	3862	549	4	0	0	0	0	logfile
✔	8XRQ	38610	2025-02-10	2024-01-08	4.19	2.23	3.70	1.5	0.006	0.87	0.0	0.05	15.75	0.01	2.322	6.69	0.86	11.0	88.8	0.2	-3.50	0.50	0.46	—	1.6	0.004	0.80	0.0	0.05	13.33	0.01	2.425	12.89	0.00	13.7	86.0	0.2	-3.28	1.24	0.53	0.50	—	3210	407	3	0	0	0	0	logfile
✔	8XPS	38560	2025-02-11	2024-01-04	3.22	3.24	3.25	1.5	0.005	0.85	1.0	0.06	20.48	0.00	2.208	5.24	4.58	9.0	90.6	0.4	-4.49	0.90	0.82	3.01	1.5	0.004	0.91	0.0	0.05	15.63	0.01	2.472	9.80	3.12	8.9	91.1	0.0	-1.95	1.32	0.92	0.87	2.79	4568	546	7	0	24	0	0	logfile
✔	7MDW	23782	2025-02-11	2021-04-06	3.58	2.25	3.45	1.5	0.002	0.55	0.0	0.04	12.68	0.00	2.293	8.46	0.00	6.5	93.5	0.0	-1.58	0.52	0.44	1.65	1.5	0.002	0.55	0.0	0.04	14.41	0.00	2.417	8.46	1.69	7.2	92.8	0.0	-2.38	1.31	0.54	0.47	1.90	3392	435	4	0	1	0	0	logfile
✔	9J8P	61237	2025-02-11	2024-08-21	3.21	3.65	—	1.5	0.006	0.90	0.0	0.05	20.97	0.01	2.235	10.53	0.00	5.4	94.6	0.0	-0.46	0.92	0.83	1.79	1.5	0.003	0.69	0.0	0.04	21.55	0.00	2.366	11.76	1.55	3.3	96.7	0.0	0.54	2.59	0.93	0.86	1.34	7061	623	3	106	1	0	0	logfile
✔	7SEP	25074	2025-02-12	2021-10-01	3.8	2.53	3.76	1.6	0.006	0.66	0.0	0.05	12.76	0.01	2.155	10.23	8.22	5.0	95.0	0.0	-0.19	0.72	0.72	2.36	1.6	0.003	0.68	0.0	0.05	16.81	0.00	2.464	10.62	5.96	2.9	97.1	0.0	-0.02	0.86	0.72	0.71	1.77	7641	930	2	0	0	0	0	logfile
✔	8BPA	16147	2025-02-14	2022-11-16	3.7	2.50	3.80	1.6	0.005	0.85	0.0	0.05	18.50	0.01	2.127	18.60	0.97	4.0	96.0	0.0	0.00	0.69	0.65	0.97	1.6	0.003	0.77	0.0	0.04	19.09	0.00	2.032	13.60	4.06	4.0	96.0	0.0	0.29	1.21	0.69	0.66	1.23	10393	1280	6	0	7	0	0	logfile
✔	8J97	36090	2025-02-11	2023-05-02	3.2	2.37	3.18	1.6	0.007	0.92	1.0	0.05	13.20	0.01	2.266	9.42	0.28	5.8	94.2	0.0	-1.02	0.73	0.71	3.94	1.7	0.005	0.73	0.0	0.05	14.91	0.01	2.551	9.42	2.82	6.2	93.8	0.0	-0.39	0.42	0.73	0.71	3.16	3863	544	4	0	0	0	0	logfile
✔	8XZH	38796	2025-02-13	2024-01-21	2.6	2.02	—	1.6	0.012	0.97	0.0	0.07	13.62	0.01	2.171	7.47	0.61	4.3	95.6	0.1	-1.34	0.77	0.83	5.30	1.8	0.004	0.61	0.0	0.04	16.43	0.00	2.475	5.74	2.65	2.3	97.7	0.0	1.04	0.45	0.78	0.85	4.07	9048	1159	6	0	0	0	0	logfile
✔	8XPY	38563	2025-02-11	2024-01-04	3.63	3.53	3.62	1.6	0.004	0.79	0.0	0.05	29.42	0.00	2.217	10.44	4.39	10.1	89.9	0.0	-4.21	0.90	0.79	2.54	1.5	0.004	0.89	0.0	0.05	15.66	0.00	2.343	13.33	3.14	13.8	86.2	0.0	-2.24	2.12	0.92	0.84	2.10	4568	546	7	0	25	0	0	logfile
✔	8KFZ	37209	2025-02-13	2023-08-16	3.3	2.30	3.50	1.6	0.004	0.67	0.0	0.04	15.61	0.00	2.206	16.17	0.10	3.7	96.3	0.0	0.79	0.72	0.72	1.74	1.5	0.004	0.67	0.0	0.04	16.16	0.00	2.500	12.65	4.76	3.1	96.9	0.0	0.62	0.34	0.72	0.73	1.65	8966	1139	5	0	0	0	0	logfile
✔	7UWN	26837	2025-02-14	2022-05-03	3.01	2.26	3.04	1.6	0.004	0.64	0.0	0.04	16.39	0.00	2.105	14.51	2.21	6.1	93.9	0.0	-1.09	0.66	0.63	1.06	1.6	0.003	0.64	0.0	0.04	16.57	0.00	2.539	9.62	4.76	5.1	94.9	0.0	-1.04	0.32	0.67	0.65	0.90	10602	1325	12	0	11	0	0	logfile

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