Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	5V4S	8633	2025-02-14	2017-03-10	4.2	7.95	—	4.2	0.012	1.56	20.0	0.14	8.80	0.01	2.352	3.29	0.00	6.6	93.1	0.3	-1.95	0.55	0.60	—	4.2	0.004	0.63	0.0	0.04	10.27	0.00	2.359	10.97	0.00	2.9	97.1	0.0	2.95	0.85	0.62	0.70	—	10756	1548	4	0	0	0	0	logfile
✔	5V6P	8637	2025-02-13	2017-03-17	4.1	4.04	—	4.1	0.015	1.37	0.0	0.08	9.65	0.01	2.463	1.41	0.00	2.6	97.0	0.4	0.18	0.40	0.58	—	4.0	0.003	0.64	0.0	0.03	12.94	0.00	2.205	8.49	0.00	2.3	97.4	0.4	3.36	1.54	0.42	0.66	—	9194	540	2	0	0	0	4676	logfile
✔	5V7V	8642	2025-02-14	2017-03-20	3.9	3.88	—	3.8	0.011	1.22	1.0	0.07	15.68	0.01	1.713	18.52	0.00	11.2	88.7	0.2	-4.92	0.55	0.69	1.61	3.8	0.003	0.64	0.0	0.04	15.25	0.00	2.245	11.55	2.84	10.5	89.5	0.0	-0.80	0.99	0.61	0.79	0.64	9919	613	4	0	9	0	4811	logfile
✔	5VAi	8653	2025-02-13	2017-03-27	4.1	4.62	—	4.6	0.008	1.11	0.0	0.05	9.72	0.01	2.049	31.73	0.21	4.4	95.3	0.3	-1.52	0.71	0.70	—	4.6	0.004	0.85	0.0	0.05	13.26	0.00	2.340	19.06	0.00	4.5	95.3	0.2	-0.52	1.08	0.70	0.70	—	9099	1178	6	0	0	0	0	logfile
✔	5NJG	3654	2025-02-12	2017-03-28	3.78	3.88	—	3.8	0.014	1.31	0.0	0.07	11.64	0.01	2.183	8.78	0.68	6.9	92.9	0.2	-4.16	0.68	0.82	2.92	3.8	0.004	0.76	0.0	0.04	15.35	0.00	2.535	11.02	3.19	5.2	94.8	0.0	0.28	2.01	0.65	0.82	2.19	8038	1020	8	0	4	0	0	logfile
✔	5VRF	8728	2025-02-11	2017-05-10	4.1	4.21	—	4.1	0.011	1.28	0.0	0.06	10.38	0.01	1.994	8.85	0.00	2.5	97.5	0.0	-4.10	0.82	0.83	—	4.1	0.004	0.74	0.0	0.04	13.16	0.00	1.942	9.87	0.00	1.4	98.6	0.0	1.81	3.40	0.83	0.83	—	4378	564	4	0	8	0	0	logfile
✔	5XLP	6731	2025-02-14	2017-05-11	4.2	4.23	—	4.2	0.009	1.36	0.0	0.06	16.05	0.01	2.194	12.48	0.57	18.2	81.4	0.5	-5.53	0.62	0.58	—	4.1	0.004	0.96	0.0	0.04	16.95	0.01	2.462	15.23	0.00	14.8	85.0	0.2	-3.93	2.39	0.65	0.63	—	9952	1343	6	24	0	0	0	logfile
✔	5W81	8782	2025-02-14	2017-06-21	3.37	3.79	—	3.9	0.008	1.26	1.0	0.06	13.89	0.00	1.940	1.47	0.00	5.1	94.9	0.0	-3.11	0.45	0.60	0.57	3.8	0.004	0.73	0.0	0.04	17.25	0.00	1.896	7.42	2.57	3.1	96.8	0.1	0.20	1.53	0.58	0.82	1.24	9393	1173	2	0	4	0	0	logfile
✔	5XWY	6777	2025-02-14	2017-06-30	3.2	3.25	—	3.2	0.008	1.18	1.0	0.06	14.68	0.00	2.263	3.64	0.87	7.6	92.3	0.1	-5.96	0.69	0.78	3.96	3.2	0.003	0.70	0.0	0.04	17.64	0.00	2.557	8.01	2.03	6.8	93.2	0.0	-0.02	1.41	0.76	0.87	3.13	10493	1117	2	51	0	0	0	logfile
✔	5oH0	3809	2025-02-11	2017-07-13	4.2	4.36	—	4.3	0.003	0.75	0.0	0.05	8.94	0.00	2.029	3.32	0.00	1.9	98.1	0.0	-3.74	0.64	0.84	—	4.2	0.004	0.61	0.0	0.04	11.09	0.00	2.575	4.40	0.00	3.9	96.1	0.0	-2.45	0.66	0.64	0.86	—	6588	942	6	0	0	0	0	logfile
✔	6AVB	7008	2025-02-13	2017-09-01	3.9	3.83	—	3.8	0.009	1.13	3.0	0.06	11.85	0.01	2.072	27.43	0.00	12.9	86.8	0.3	-5.00	0.58	0.79	2.72	3.8	0.005	1.03	0.0	0.05	15.85	0.01	2.480	18.42	3.91	12.2	87.7	0.1	-2.51	1.70	0.58	0.80	1.89	8673	1101	6	0	3	0	0	logfile
✔	6AV9	7007	2025-02-13	2017-09-01	3.9	3.83	—	3.8	0.008	1.11	0.0	0.06	12.77	0.01	1.920	32.37	0.33	12.8	86.8	0.4	-4.62	0.58	0.80	2.42	3.8	0.004	0.97	0.0	0.05	16.42	0.01	2.529	17.21	3.58	10.7	89.0	0.4	-1.98	1.30	0.58	0.79	0.91	8673	1101	6	0	3	0	0	logfile
✔	6AVE	7009	2025-02-14	2017-09-02	3.7	3.77	3.69	3.7	0.008	0.88	0.0	0.07	9.62	0.01	2.013	7.29	0.00	5.0	95.0	0.0	-3.23	0.63	0.70	2.82	3.7	0.003	0.65	0.0	0.04	15.26	0.00	2.459	7.33	3.11	3.2	96.8	0.0	0.47	1.29	0.68	0.75	2.56	9657	1272	6	0	6	0	0	logfile
✔	6AYG	7020	2025-02-14	2017-09-08	4.65	4.76	—	4.6	0.013	1.56	0.0	0.07	11.75	0.01	2.180	19.94	1.09	7.7	91.9	0.5	-4.34	0.84	0.80	—	4.6	0.003	0.60	0.0	0.04	10.48	0.00	2.541	1.20	0.00	4.6	95.4	0.0	1.19	0.84	0.84	0.79	—	10456	1756	4	0	0	0	0	logfile
✔	6B19	7031	2025-02-11	2017-09-18	4.5	4.61	—	4.4	0.023	1.38	0.0	0.05	15.60	0.01	2.201	16.18	0.00	19.4	80.5	0.1	-5.73	0.74	0.63	—	4.4	0.007	1.27	0.0	0.05	19.43	0.01	2.130	60.65	0.00	38.8	61.0	0.2	-6.28	1.41	0.77	0.63	—	5699	907	4	38	0	0	409	logfile
✔	6B3o	7040	2025-02-12	2017-09-22	4.1	4.04	—	4.1	0.024	1.82	0.0	0.11	10.99	0.01	2.021	2.28	0.34	2.1	97.6	0.3	1.14	0.69	0.76	—	4.0	0.004	0.72	0.0	0.04	13.94	0.00	2.559	7.27	0.00	2.9	96.8	0.3	1.39	1.67	0.71	0.76	—	7980	1032	3	0	0	0	0	logfile
✔	6B3J	7039	2025-02-13	2017-09-22	3.3	3.63	3.26	3.5	0.007	1.00	0.0	0.06	9.89	0.01	2.229	4.37	0.00	4.2	95.8	0.0	0.60	0.66	0.73	2.35	3.5	0.003	0.62	0.0	0.04	14.84	0.00	2.499	8.23	2.47	3.0	97.0	0.0	0.95	1.69	0.69	0.77	1.61	9034	1129	6	0	0	0	0	logfile
✔	6BGi	7095	2025-02-12	2017-10-28	3.8	4.07	3.58	4.0	0.008	1.00	0.0	0.05	8.91	0.01	2.002	48.38	0.00	16.1	83.9	0.0	-5.29	0.47	0.64	0.86	4.0	0.003	0.83	0.0	0.04	15.21	0.00	2.230	13.96	3.14	10.3	89.7	0.0	-1.46	1.10	0.48	0.65	1.20	7774	1020	4	0	4	0	0	logfile
✔	6BGJ	7096	2025-02-12	2017-10-28	3.8	3.68	3.27	3.6	0.008	1.21	0.0	0.06	10.72	0.01	2.142	10.55	0.00	13.7	85.7	0.6	-5.82	0.47	0.59	1.68	3.6	0.004	0.88	0.0	0.05	14.27	0.00	2.513	13.24	1.38	12.0	87.8	0.2	-1.35	1.38	0.49	0.59	1.22	7418	980	4	0	2	0	0	logfile
✔	5YRN	6842	2025-02-12	2017-11-09	4.1	3.09	3.51	6.7	0.007	1.00	0.0	0.05	10.65	0.00	2.371	8.18	0.00	4.7	95.3	0.0	-3.39	0.53	0.56	—	3.7	0.005	0.93	0.0	0.05	14.45	0.01	2.395	20.97	0.00	4.2	95.8	0.0	-0.88	2.98	0.64	0.81	—	8280	1044	12	0	0	0	0	logfile

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