Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7URM	26714	2025-02-10	2022-04-22	3.0	3.11	3.56	2.9	0.009	1.41	0.0	0.11	28.63	0.01	2.440	0.70	0.00	0.0	0.0	0.0	—	0.14	0.53	—	3.0	0.007	1.15	0.0	0.05	27.72	0.01	2.028	23.68	0.00	0.0	0.0	0.0	—	1.30	0.15	0.53	—	1905	0	1	90	0	0	0	logfile
✔	8iHK	35447	2025-02-10	2023-02-22	3.21	3.56	3.40	3.6	0.003	0.57	0.0	0.04	16.21	0.00	2.246	4.47	0.00	2.8	97.2	0.0	-0.99	0.51	0.79	1.56	3.6	0.003	0.59	0.0	0.04	17.05	0.00	2.628	3.13	4.24	3.9	96.1	0.0	0.91	0.38	0.48	0.78	1.01	2253	283	2	0	1	0	0	logfile
✔	7JLX	22383	2025-02-10	2020-07-30	4.6	3.86	—	3.7	0.001	0.42	0.0	0.04	3.80	0.00	2.240	2.96	0.00	6.7	93.3	0.0	1.23	0.54	0.51	—	3.8	0.004	0.88	0.0	0.05	7.64	0.00	2.240	3.38	0.00	18.9	80.5	0.6	-3.12	2.45	0.48	0.54	—	3288	664	4	0	0	0	0	logfile
✔	8ESA	28573	2025-02-10	2022-10-13	3.4	3.68	3.37	3.6	0.004	0.49	0.0	0.04	14.83	0.00	2.243	5.75	0.30	4.0	96.0	0.0	-0.99	0.65	0.84	2.85	3.6	0.002	0.49	0.0	0.04	16.45	0.00	2.466	5.25	1.20	2.1	97.9	0.0	-0.18	0.38	0.64	0.86	2.00	3140	384	3	0	0	0	0	logfile
✔	7TPK	26058	2025-02-10	2022-01-25	3.4	3.41	—	3.4	0.011	1.40	1.0	0.08	9.83	0.01	2.528	2.12	0.00	4.7	95.3	0.0	-0.98	0.60	0.72	4.39	3.4	0.002	0.59	0.0	0.04	14.84	0.00	2.541	1.77	1.44	2.1	97.9	0.0	-1.11	1.23	0.64	0.80	2.86	1484	194	2	0	1	0	0	logfile
✔	7YMJ	33930	2025-02-10	2022-07-28	3.35	3.65	3.24	3.6	0.005	0.95	0.0	0.05	14.75	0.01	2.349	1.30	0.00	3.6	96.4	0.0	-3.45	0.64	0.83	2.70	3.6	0.003	0.59	0.0	0.04	15.14	0.00	2.585	2.12	2.80	3.8	96.2	0.0	0.72	0.38	0.63	0.84	1.81	3085	396	3	0	1	0	0	logfile
✔	8ERQ	28558	2025-02-10	2022-10-12	3.3	3.48	3.22	3.5	0.010	1.32	0.0	0.07	10.04	0.01	2.265	2.12	0.95	3.8	96.2	0.0	0.38	0.63	0.76	4.07	3.5	0.003	0.65	0.0	0.04	14.03	0.00	2.610	3.10	3.48	3.4	96.6	0.0	-0.33	1.85	0.65	0.84	3.44	3178	423	4	0	1	0	0	logfile
✔	9C6K	45249	2025-02-10	2024-06-07	2.94	3.79	2.95	3.1	0.007	0.76	0.0	0.04	26.38	0.01	1.888	17.91	0.00	0.0	0.0	0.0	—	0.89	0.84	—	3.1	0.007	0.71	0.0	0.04	25.52	0.00	1.871	14.48	0.00	0.0	0.0	0.0	—	0.87	0.89	0.87	—	1745	0	2	80	9	0	0	logfile
✔	8GS9	34226	2025-02-10	2022-09-05	2.66	2.88	2.77	2.9	0.003	0.55	0.0	0.04	11.98	0.00	2.297	3.11	0.60	5.6	93.8	0.5	-0.51	0.61	0.71	2.97	2.9	0.004	0.74	0.0	0.05	16.05	0.00	2.592	6.71	3.88	3.8	96.2	0.0	-0.82	0.83	0.63	0.75	2.96	3116	396	3	0	0	0	0	logfile
✔	7UG0	26482	2025-02-10	2022-03-23	2.55	3.24	2.49	3.1	0.002	0.45	0.0	0.04	11.57	0.00	2.287	2.34	0.00	1.0	99.0	0.0	2.00	0.56	0.90	3.59	3.0	0.003	0.51	0.0	0.04	12.86	0.00	2.305	3.59	0.62	0.5	99.5	0.0	3.96	1.26	0.53	0.87	2.38	3126	418	2	0	3	4	0	logfile
✘	5A7U	3079	2025-02-10	2015-07-10	4.8	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	455	27	2	0	1	0	231	logfile
✔	7WRL	32732	2025-02-10	2022-01-27	3.51	3.69	—	3.6	0.006	1.03	0.0	0.06	14.71	0.01	2.289	5.84	0.00	13.4	86.6	0.0	-4.19	0.64	0.78	2.31	3.6	0.003	0.67	0.0	0.04	15.95	0.00	2.458	6.63	3.10	10.7	89.3	0.0	-3.34	0.44	0.63	0.77	2.90	3251	419	3	0	0	0	0	logfile
✔	6X0V	21985	2025-02-10	2020-05-17	4.5	4.37	—	4.4	0.003	0.62	1.0	0.04	11.58	0.00	2.285	15.16	4.48	3.5	96.0	0.5	-2.45	0.40	0.74	—	4.4	0.002	0.46	0.0	0.03	11.61	0.00	2.465	17.39	0.00	4.0	96.0	0.0	2.56	1.19	0.40	0.75	—	1384	211	4	0	0	0	62	logfile
✘	7B6E	12053	2025-02-10	2020-12-07	4.5	2.79	—	5.1	0.005	1.03	0.0	0.05	15.04	0.01	2.129	36.05	0.00	10.9	89.1	0.0	-3.88	0.62	0.66	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	2205	269	1	0	0	0	0	logfile
✔	7WTJ	32788	2025-02-10	2022-02-04	4.2	4.07	—	4.1	0.006	0.85	3.0	0.05	13.86	0.01	2.242	10.88	0.58	8.9	91.1	0.0	-2.21	0.55	0.79	—	4.1	0.003	0.69	0.0	0.05	14.23	0.00	2.530	6.94	0.00	9.1	90.9	0.0	-2.18	0.43	0.55	0.80	—	3261	424	3	0	0	0	0	logfile
✔	7URi	26713	2025-02-10	2022-04-22	2.6	2.67	2.95	2.6	0.009	1.37	0.0	0.12	30.06	0.01	2.201	7.31	0.00	0.0	0.0	0.0	—	0.05	0.34	—	2.7	0.007	1.37	0.0	0.06	28.71	0.01	2.201	19.50	0.00	0.0	0.0	0.0	—	2.07	0.08	0.38	—	1905	0	1	90	0	0	0	logfile
✔	7UHB	26511	2025-02-10	2022-03-26	3.0	3.17	2.97	3.2	0.011	1.36	3.0	0.12	9.64	0.00	2.562	5.08	1.42	3.0	96.6	0.4	-0.52	0.52	0.54	-0.09	3.1	0.004	0.64	0.0	0.04	16.12	0.00	2.506	6.04	3.32	3.0	97.0	0.0	0.58	2.43	0.68	0.83	3.64	2141	270	3	0	3	0	0	logfile
✔	7UiU	26553	2025-02-10	2022-03-29	2.8	3.11	2.72	3.1	0.004	0.62	0.0	0.04	13.60	0.00	2.356	3.35	0.00	4.8	95.2	0.0	-2.09	0.28	0.82	1.99	3.3	0.005	0.90	0.0	0.04	18.25	0.00	2.504	8.38	1.67	6.0	94.0	0.0	-2.70	1.37	0.28	0.89	2.33	607	85	1	0	0	0	0	logfile
✔	7RU8	24699	2025-02-10	2021-08-16	3.8	4.10	3.80	3.9	0.022	1.87	0.0	0.12	10.39	0.01	2.356	1.12	0.00	6.1	93.9	0.0	-0.23	0.77	0.72	2.53	3.9	0.004	0.82	0.0	0.05	15.11	0.00	2.508	11.96	3.78	8.4	91.6	0.0	-1.56	1.49	0.78	0.75	0.95	3198	405	5	0	3	0	0	logfile
✔	8CUJ	27001	2025-02-10	2022-05-17	3.04	2.55	3.04	3.2	0.002	0.53	0.0	0.04	14.73	0.00	2.276	5.90	0.00	2.1	97.9	0.0	1.48	0.44	0.80	0.86	3.1	0.003	0.55	0.0	0.04	15.59	0.00	2.624	5.01	3.05	2.1	97.9	0.0	1.45	0.90	0.44	0.81	1.76	3293	433	2	0	0	1	0	logfile

• ← previous
• Page 2 of 255
• next →