Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8ViB	43256	2025-02-11	2024-01-03	4.6	7.58	4.37	4.4	0.009	1.12	1.0	0.07	5.12	0.00	2.305	5.79	0.00	5.6	93.5	0.9	-0.39	0.40	0.54	—	4.4	0.003	0.76	0.0	0.04	5.70	0.00	2.472	5.79	0.00	10.6	89.0	0.5	-1.94	3.62	0.49	0.74	—	4421	888	6	0	7	0	0	logfile
✔	8DXR	27774	2025-02-14	2022-08-02	4.0	4.31	4.01	4.2	0.004	0.81	0.0	0.04	5.27	0.00	2.255	1.54	0.00	11.6	88.3	0.1	-0.80	0.67	0.71	—	4.2	0.004	0.66	0.0	0.04	5.02	0.00	2.529	0.13	0.00	13.0	86.9	0.1	0.32	0.35	0.68	0.72	—	10435	2101	7	0	0	0	0	logfile
✔	6CoZ	7545	2025-02-10	2018-03-13	3.36	4.78	—	4.7	0.009	1.71	0.0	0.07	5.63	0.01	2.541	0.00	0.00	3.2	96.2	0.6	-2.49	0.78	0.68	—	4.4	0.003	0.80	0.0	0.04	5.39	0.00	2.616	1.77	0.00	8.0	92.0	0.0	-2.12	1.59	0.82	0.77	—	1586	320	2	0	0	0	0	logfile
✔	7N9Q	24259	2025-02-12	2021-06-18	4.6	4.92	—	2.3	0.002	0.88	0.0	0.00	5.65	0.00	2.600	0.00	0.00	8.9	90.3	0.8	-1.59	0.79	0.69	—	2.6	0.006	1.47	0.0	0.00	7.94	0.00	2.432	35.79	0.00	28.5	70.6	1.0	-4.70	2.66	0.86	0.82	—	6945	2315	1	0	0	0	0	logfile
✔	7N9Y	24264	2025-02-12	2021-06-18	4.8	4.30	—	2.2	0.019	1.07	0.0	0.00	6.04	0.00	2.538	0.59	0.00	8.5	91.1	0.3	-1.98	0.49	0.33	—	2.3	0.004	1.22	0.0	0.00	6.48	0.00	2.505	15.16	0.00	26.4	73.1	0.5	-4.83	3.35	0.52	0.31	—	7515	2505	2	0	0	0	0	logfile
✘	8i6Q	35203	2025-02-11	2023-01-29	4.23	7.65	4.17	4.2	0.005	0.73	0.0	0.04	6.12	0.00	2.031	15.78	0.00	7.3	92.6	0.1	-1.63	0.70	0.83	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3975	810	4	0	0	0	0	logfile
✔	8HK3	34843	2025-02-13	2022-11-24	3.2	2.28	3.11	2.1	0.002	0.42	0.0	0.04	6.31	0.00	2.069	3.40	0.11	0.9	99.1	0.0	-1.02	0.74	0.73	3.34	2.1	0.004	0.61	0.0	0.04	13.68	0.00	2.522	4.61	2.24	3.6	96.4	0.0	0.72	1.22	0.77	0.80	3.28	8746	1135	5	0	0	0	0	logfile
✔	7WD8	32434	2025-02-11	2021-12-21	4.3	3.48	—	3.5	0.002	0.51	0.0	0.04	6.43	0.00	2.246	8.80	0.00	4.1	95.7	0.2	-0.96	0.60	0.61	—	3.4	0.003	0.71	0.0	0.04	12.76	0.00	2.585	12.07	0.00	4.7	95.2	0.2	-0.11	1.92	0.62	0.66	—	4029	524	4	0	0	0	0	logfile
✔	8URE	42491	2025-02-13	2023-10-25	4.4	3.48	4.69	5.0	0.009	1.42	0.0	0.06	6.50	0.01	2.628	0.00	0.00	1.3	98.7	0.0	-0.01	0.78	0.79	—	4.7	0.009	0.83	0.0	0.03	5.57	0.01	2.468	3.69	0.00	5.7	94.3	0.0	-1.13	0.68	0.82	0.83	—	8896	1792	8	0	0	0	0	logfile
✔	6QPi	4614	2025-02-10	2019-02-14	3.3	3.37	2.73	3.4	0.005	0.70	0.0	0.04	6.59	0.01	2.432	2.09	0.00	1.4	98.6	0.0	-3.02	0.39	0.62	—	3.3	0.002	0.42	0.0	0.04	3.84	0.00	2.638	0.89	0.00	2.6	97.4	0.0	3.06	1.22	0.40	0.61	—	2288	462	2	0	0	0	0	logfile
✔	8UP1	42442	2025-02-12	2023-10-20	4.55	3.74	4.59	4.7	0.009	1.48	0.0	0.06	6.87	0.01	2.606	0.00	0.00	1.5	98.5	0.0	0.31	0.79	0.80	—	4.7	0.006	0.83	0.0	0.04	5.82	0.00	2.030	6.29	0.00	8.2	91.5	0.3	0.10	2.24	0.82	0.84	—	7088	1428	4	0	0	0	0	logfile
✔	7RFP	24444	2025-02-11	2021-07-14	4.4	4.57	—	4.3	0.014	2.06	8.0	0.12	7.12	0.01	1.581	3.60	8.00	9.5	87.5	3.0	-1.46	0.68	0.61	—	4.3	0.004	0.91	0.0	0.04	6.98	0.00	2.434	6.58	0.00	16.5	83.0	0.5	-3.65	1.47	0.81	0.76	—	5532	1114	6	0	0	0	0	logfile
✔	8YZB	39688	2025-02-11	2024-04-06	3.29	3.29	3.38	1.8	0.003	0.54	1.0	0.04	7.28	0.00	2.242	2.62	1.43	2.2	97.8	0.0	-0.85	0.86	0.81	2.16	1.4	0.003	0.75	0.0	0.05	13.64	0.00	2.265	3.65	1.72	3.4	96.6	0.0	0.49	1.59	0.90	0.90	2.64	6448	792	2	0	0	0	0	logfile
✔	7TRY	26103	2025-02-12	2022-01-31	3.7	4.15	—	4.0	0.004	0.80	0.0	0.05	7.34	0.01	2.261	3.44	0.00	1.7	98.3	0.0	1.03	0.67	0.74	1.05	4.0	0.005	0.78	0.0	0.05	14.35	0.00	2.349	15.00	3.55	3.4	96.6	0.0	1.33	2.52	0.69	0.79	0.99	8340	1211	6	0	0	0	0	logfile
✔	6DSo	8910	2025-02-11	2018-06-14	3.0	3.30	2.98	3.4	0.009	0.94	0.0	0.06	7.35	0.00	2.431	1.53	0.00	3.2	96.8	0.0	-4.46	0.49	0.81	6.10	3.4	0.005	0.65	0.0	0.04	14.61	0.00	2.604	5.39	1.39	8.0	92.0	0.0	-4.28	0.62	0.50	0.83	5.39	6588	828	12	0	0	0	0	logfile
✔	8oWK	17239	2025-02-10	2023-04-28	3.86	3.20	3.47	4.0	0.013	3.09	0.0	0.12	7.40	0.01	2.508	14.24	3.23	0.0	100.0	0.0	0.74	0.46	0.67	5.30	4.0	0.005	0.81	0.0	0.05	14.02	0.00	2.567	15.58	0.32	3.4	96.6	0.0	-3.26	1.71	0.49	0.73	6.42	3050	400	10	0	0	0	0	logfile
✔	7LRE	23496	2025-02-12	2021-02-16	2.76	3.85	2.75	3.2	0.003	0.44	0.0	0.04	7.41	0.00	2.301	3.48	0.22	1.6	98.4	0.0	2.20	0.80	0.83	4.37	3.2	0.002	0.46	0.0	0.04	9.77	0.00	2.632	3.17	0.66	1.6	98.2	0.2	2.36	1.11	0.82	0.89	3.60	8144	1004	4	0	2	0	0	logfile
✔	8WZ2	37944	2025-02-13	2023-11-01	2.73	3.66	2.90	3.4	0.004	0.58	0.0	0.08	7.42	0.00	2.029	4.69	0.10	1.0	99.0	0.0	-1.03	0.72	0.78	3.28	3.3	0.003	0.77	0.0	0.04	15.56	0.00	2.451	9.00	2.40	2.5	97.5	0.0	0.67	4.13	0.70	0.85	2.80	9355	1202	6	0	0	0	0	logfile
✔	7oZH	13124	2025-02-11	2021-06-28	3.02	3.20	1.84	3.3	0.024	1.40	0.0	0.09	7.44	0.01	2.546	14.72	0.00	5.4	94.6	0.0	-2.78	0.33	0.60	4.68	3.2	0.003	0.66	0.0	0.05	14.81	0.00	2.569	14.21	5.90	7.7	92.3	0.0	-2.22	1.43	0.40	0.68	0.89	3890	580	10	0	0	0	0	logfile
✔	7US9	26729	2025-02-10	2022-04-23	3.8	3.84	3.64	3.9	0.015	1.58	0.0	0.11	7.49	0.01	2.489	3.45	0.00	2.3	97.7	0.0	1.07	0.59	0.74	4.43	3.8	0.003	0.84	0.0	0.11	12.30	0.01	2.458	5.92	1.23	3.9	96.1	0.0	0.19	1.45	0.60	0.77	2.97	1127	145	3	0	4	0	0	logfile

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