Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9iiZ	60610	2025-02-11	2024-06-21	3.8	4.41	3.87	4.3	0.005	1.23	0.0	0.07	22.77	0.01	2.256	10.55	0.59	9.4	90.6	0.0	-3.44	0.71	0.60	-0.85	4.3	0.003	0.87	0.0	0.05	22.65	0.01	2.528	21.10	5.31	7.8	92.0	0.3	-2.25	1.52	0.72	0.62	0.82	4080	377	3	49	0	0	0	logfile
✔	7LC9	23270	2025-02-11	2021-01-10	3.2	3.25	—	3.1	0.004	0.72	0.0	0.05	17.46	0.00	1.884	31.60	18.58	13.4	86.6	0.0	-4.15	0.71	0.77	-0.84	3.1	0.005	0.75	0.0	0.05	17.16	0.00	2.444	30.19	6.78	12.6	87.4	0.0	-3.68	0.68	0.69	0.79	0.22	3497	525	12	0	0	0	0	logfile
✘	6RJU	4906	2025-02-10	2019-04-29	3.2	4.49	2.14	10.0	0.007	0.94	0.0	0.05	15.36	0.00	2.423	4.52	0.00	11.6	88.4	0.0	-7.10	0.22	-0.01	-0.80	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	1992	131	1	0	0	0	997	logfile
✔	8XBW	38231	2025-02-10	2023-12-07	2.89	5.59	1.82	5.3	0.006	1.06	0.0	0.05	23.74	0.01	1.155	13.10	0.00	0.8	99.2	0.0	-0.65	0.76	0.71	-0.50	5.3	0.005	1.25	0.0	0.06	23.77	0.01	2.512	25.80	2.48	1.7	98.3	0.0	-1.70	2.03	0.81	0.82	0.77	2671	242	5	36	0	0	0	logfile
✔	8PXB	18002	2025-02-12	2023-07-23	3.6	4.63	3.71	4.2	0.002	0.45	0.0	0.04	9.09	0.00	2.259	7.28	0.46	3.6	96.4	0.0	2.65	0.54	0.61	-0.50	4.2	0.006	1.20	1.0	0.06	14.10	0.00	2.027	21.47	2.44	5.9	94.1	0.0	0.49	1.43	0.55	0.74	-0.85	8102	1018	2	0	0	0	0	logfile
✔	7KU5	23034	2025-02-10	2020-11-24	3.76	3.63	—	3.9	0.006	1.29	0.0	0.07	14.85	0.01	2.420	3.63	0.00	12.8	87.2	0.0	-5.41	0.23	0.65	-0.48	3.9	0.003	0.67	0.0	0.05	15.81	0.01	2.630	10.16	1.67	11.6	88.4	0.0	-1.88	1.17	0.24	0.70	2.01	750	88	2	0	4	0	0	logfile
✔	8EFP	28087	2025-02-11	2022-09-08	3.8	4.73	3.90	4.0	0.006	1.46	7.0	0.09	18.61	0.01	1.908	33.65	3.07	13.3	86.7	0.0	-4.26	0.82	0.62	-0.42	4.0	0.003	0.89	0.0	0.04	19.06	0.00	2.492	16.83	2.49	9.2	90.8	0.0	-2.27	0.85	0.84	0.71	-0.08	4705	594	2	0	0	0	0	logfile
✔	8UFE	42205	2025-02-11	2023-10-04	3.68	4.10	3.84	4.1	0.005	0.79	0.0	0.04	19.16	0.00	2.205	12.83	1.76	5.3	94.4	0.2	1.92	0.49	0.72	-0.41	4.1	0.003	0.67	0.0	0.04	18.34	0.00	2.473	11.71	4.71	4.7	95.1	0.2	1.80	0.37	0.54	0.74	-0.41	3449	470	2	0	1	0	0	logfile
✔	8DWi	27755	2025-02-10	2022-08-01	3.4	4.06	3.58	4.1	0.003	0.63	0.0	0.04	13.02	0.01	2.258	7.44	0.00	5.0	95.0	0.0	0.29	0.28	0.33	-0.40	4.0	0.003	0.77	0.0	0.04	16.40	0.01	2.556	10.13	2.87	6.0	94.0	0.0	-0.47	1.65	0.47	0.71	2.20	3192	424	1	0	0	0	0	logfile
✔	7TMC	25995	2025-02-11	2022-01-19	3.25	3.24	2.95	4.2	0.005	0.72	0.0	0.07	18.02	0.01	2.152	13.78	0.00	9.5	90.5	0.0	-4.08	0.21	0.31	-0.39	3.5	0.004	0.82	0.0	0.06	16.96	0.01	2.414	12.17	3.70	11.0	89.0	0.0	-4.10	1.82	0.34	0.75	2.99	3426	405	6	0	12	0	0	logfile
✔	8iDC	35363	2025-02-14	2023-02-12	3.9	5.12	3.90	3.9	0.004	1.02	0.0	0.05	10.68	0.01	2.221	5.95	0.00	6.9	92.9	0.2	-3.33	0.77	0.83	-0.28	3.9	0.002	0.72	0.0	0.04	12.21	0.00	2.506	9.71	0.75	5.7	94.2	0.1	-1.34	0.39	0.77	0.83	0.39	9701	1342	5	0	0	0	0	logfile
✔	8A1R	15084	2025-02-14	2022-06-01	3.6	5.63	3.62	3.4	0.011	0.86	0.0	0.06	16.56	0.00	2.097	11.72	0.00	5.2	94.8	0.0	-0.06	0.91	0.75	-0.28	3.5	0.004	0.71	0.0	0.05	16.17	0.00	2.460	17.48	1.42	6.1	93.9	0.0	-0.17	0.58	0.95	0.86	-0.05	9286	1186	4	0	4	0	0	logfile
✔	7FG3	31577	2025-02-13	2021-07-25	3.9	3.62	—	4.0	0.006	1.13	0.0	0.06	14.47	0.01	1.929	37.29	0.00	18.5	80.8	0.7	-4.60	0.22	0.47	-0.27	3.9	0.004	0.94	0.0	0.05	16.64	0.01	2.344	20.63	2.99	13.8	85.6	0.6	-3.61	0.75	0.23	0.44	-0.04	9054	1166	2	0	0	0	0	logfile
✔	8iEM	35386	2025-02-12	2023-02-15	3.35	3.87	3.59	3.9	0.003	0.69	0.0	0.04	16.41	0.01	2.211	7.27	0.58	6.2	93.7	0.1	-1.00	0.51	0.55	-0.19	3.9	0.004	0.77	0.0	0.04	17.18	0.01	2.111	8.83	3.59	7.9	92.1	0.0	-0.81	0.89	0.56	0.72	0.55	7829	1011	2	0	3	0	0	logfile
✔	8CTG	26989	2025-02-11	2022-05-14	3.8	3.16	3.72	3.3	0.004	0.98	0.0	0.05	7.62	0.01	2.113	12.33	6.90	9.7	88.5	1.8	-3.04	0.57	0.35	-0.17	2.3	0.004	0.98	0.0	0.04	7.47	0.01	2.306	7.41	3.45	15.6	84.1	0.3	-3.14	2.04	0.60	0.43	1.36	5100	1006	4	0	1	0	0	logfile
✔	8ZNi	60272	2025-02-11	2024-05-27	3.29	4.18	3.32	3.9	0.004	0.71	0.0	0.21	14.83	0.00	1.220	19.67	0.00	10.4	89.6	0.0	-3.51	0.76	0.59	-0.17	3.9	0.003	0.78	0.0	0.05	15.41	0.00	2.529	11.83	6.34	12.9	87.1	0.0	-3.96	3.19	0.79	0.67	0.73	3585	496	3	0	6	0	0	logfile
✔	6CU8	7619	2025-02-10	2018-03-23	3.6	3.65	—	4.2	0.004	0.73	0.0	0.06	7.75	0.00	2.412	6.41	0.00	5.1	94.9	0.0	-2.86	0.45	0.73	-0.16	4.3	0.005	0.78	0.0	0.06	12.37	0.00	2.536	12.65	3.55	12.1	87.9	0.0	-3.11	1.75	0.42	0.74	2.67	2880	410	10	0	0	0	0	logfile
✔	7VZF	32227	2025-02-10	2021-11-16	2.95	2.71	—	3.0	0.009	1.06	0.0	0.06	16.23	0.01	1.971	38.45	0.00	26.5	73.5	0.0	-5.56	0.30	0.43	-0.13	2.8	0.004	0.93	0.0	0.05	19.17	0.00	2.345	10.57	6.74	18.8	81.2	0.0	-4.25	1.85	0.37	0.63	-0.39	2628	363	3	0	0	0	0	logfile
✔	8YMK	39396	2025-02-10	2024-03-09	3.7	3.92	1.91	7.8	0.005	1.22	1.0	0.06	11.93	0.01	2.212	16.34	0.00	14.1	84.4	1.6	-1.73	0.59	0.62	-0.11	7.7	0.003	1.14	0.0	0.06	13.52	0.00	2.612	12.37	4.51	11.2	87.5	1.3	-1.02	1.84	0.60	0.63	-0.04	2744	452	2	0	0	0	0	logfile
✔	8EDL	28035	2025-02-10	2022-09-05	3.7	3.30	3.60	3.1	0.002	0.52	0.0	0.03	11.07	0.00	2.307	6.09	0.00	2.1	97.7	0.3	2.83	0.62	0.61	-0.09	3.1	0.003	0.59	0.0	0.03	13.42	0.00	2.535	6.09	2.31	2.6	97.4	0.0	3.40	1.12	0.68	0.73	2.60	2470	395	1	0	0	0	0	logfile

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