Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8EDL	28035	2025-02-10	2022-09-05	3.7	3.30	3.60	3.1	0.002	0.52	0.0	0.03	11.07	0.00	2.307	6.09	0.00	2.1	97.7	0.3	2.83	0.62	0.61	-0.09	3.1	0.003	0.59	0.0	0.03	13.42	0.00	2.535	6.09	2.31	2.6	97.4	0.0	3.40	1.12	0.68	0.73	2.60	2470	395	1	0	0	0	0	logfile
✔	8V12	42878	2025-02-12	2023-11-19	3.81	4.38	3.83	4.1	0.002	0.50	0.0	0.04	11.58	0.00	2.196	11.64	2.72	1.8	98.2	0.0	2.07	0.60	0.68	-0.08	4.1	0.003	0.80	0.0	0.05	14.93	0.00	2.448	16.23	3.51	3.0	97.0	0.0	1.65	0.96	0.62	0.77	0.30	7960	979	2	0	2	0	0	logfile
✔	8iEN	35387	2025-02-12	2023-02-15	3.25	3.66	3.30	7.2	0.004	1.21	0.0	0.04	14.04	0.00	2.168	8.43	0.24	5.0	94.9	0.1	-2.18	0.18	0.00	-0.05	7.0	0.006	1.23	1.0	0.05	15.93	0.01	1.972	12.77	2.01	6.2	93.8	0.0	-0.37	1.19	0.32	0.23	0.69	7678	991	2	0	4	0	0	logfile
✔	8K26	36829	2025-02-14	2023-07-12	3.6	3.91	3.69	3.7	0.006	1.31	1.0	0.07	17.74	0.01	2.221	8.76	0.71	5.7	94.1	0.2	-3.00	0.69	0.54	-0.04	3.7	0.004	0.81	0.0	0.05	17.49	0.00	2.402	19.64	2.03	5.8	94.0	0.2	-0.96	1.10	0.71	0.58	0.55	10549	1336	6	0	0	0	0	logfile
✔	7NZM	12665	2025-02-13	2021-03-24	3.96	6.56	4.22	4.2	0.007	1.12	0.0	0.06	14.32	0.01	1.774	11.10	0.00	3.8	96.2	0.0	-1.56	0.77	0.51	-0.04	4.3	0.003	0.76	0.0	0.04	15.20	0.00	2.011	14.06	0.83	2.9	97.1	0.0	0.45	1.49	0.95	0.85	0.53	9109	1157	8	0	4	0	0	logfile
✔	8ERL	28554	2025-02-11	2022-10-12	3.9	4.58	3.40	4.1	0.005	1.28	0.0	0.07	15.42	0.01	2.296	4.84	0.27	9.5	90.5	0.0	-3.82	0.86	0.76	-0.02	4.1	0.003	0.82	0.0	0.05	15.84	0.00	2.570	16.73	3.85	8.4	91.6	0.0	-2.52	1.04	0.87	0.79	-0.44	6600	830	2	0	0	0	0	logfile
✔	8E5G	27912	2025-02-13	2022-08-22	3.9	4.43	4.33	4.2	0.006	1.05	10.0	0.10	17.24	0.00	1.918	47.42	0.00	9.6	89.9	0.5	-2.33	0.62	0.75	0.01	4.2	0.005	1.06	0.0	0.04	18.87	0.00	1.514	13.81	2.99	9.9	89.3	0.8	-2.91	0.79	0.63	0.76	0.70	9065	1100	10	0	20	0	0	logfile
✔	6XSS	22305	2025-02-12	2020-07-16	3.7	3.37	—	3.3	0.003	0.63	0.0	0.04	12.31	0.00	1.843	28.34	0.00	2.5	97.5	0.0	-0.32	0.74	0.78	0.04	3.3	0.006	0.83	0.0	0.04	16.92	0.01	2.513	20.49	3.28	2.4	97.6	0.0	2.00	1.27	0.75	0.80	0.36	8048	1040	4	0	0	0	0	logfile
✔	6N1i	8903	2025-02-14	2018-11-08	3.58	3.63	—	3.6	0.009	1.13	0.0	0.06	9.87	0.01	1.147	27.10	0.00	2.4	97.6	0.0	-6.04	0.42	0.58	0.05	3.6	0.004	0.78	0.0	0.04	17.43	0.00	2.381	14.29	2.45	4.4	95.6	0.0	-0.47	2.30	0.56	0.82	1.82	11136	1360	16	0	0	0	0	logfile
✔	6N1H	8902	2025-02-14	2018-11-08	3.17	3.22	—	3.2	0.006	1.13	0.0	0.06	12.23	0.01	0.657	32.07	3.97	7.4	92.6	0.0	-7.22	0.39	0.46	0.05	3.2	0.003	0.73	0.0	0.04	16.82	0.00	2.423	8.58	1.44	4.2	95.8	0.0	0.27	2.37	0.61	0.83	1.49	10991	1328	16	0	0	0	0	logfile
✔	8J88	36063	2025-02-12	2023-05-01	3.49	4.36	3.55	3.5	0.002	0.56	0.0	0.04	11.87	0.00	2.205	5.61	0.00	4.8	95.2	0.0	-0.95	0.81	0.59	0.05	3.5	0.004	0.71	0.0	0.05	14.42	0.01	2.410	15.43	1.07	8.7	91.3	0.0	-0.85	1.16	0.83	0.65	0.94	7846	954	2	0	0	0	0	logfile
✔	9K26	61991	2025-02-13	2024-10-17	3.0	3.96	3.34	3.9	0.004	0.71	0.0	0.05	13.77	0.00	1.994	11.88	0.72	7.9	92.0	0.1	-1.03	0.64	0.64	0.07	3.8	0.004	0.89	0.0	0.04	17.01	0.00	2.328	10.31	4.55	6.9	93.1	0.0	-0.77	1.55	0.65	0.77	1.89	8967	1147	7	0	1	0	0	logfile
✔	7RTV	24690	2025-02-10	2021-08-15	3.96	4.06	—	4.1	0.004	0.76	0.0	0.05	24.99	0.00	2.207	14.04	0.32	2.8	97.2	0.0	3.61	0.41	0.63	0.10	4.1	0.003	0.93	0.0	0.05	17.54	0.00	2.376	13.34	5.19	1.9	98.1	0.0	3.30	0.51	0.41	0.63	0.28	2881	366	3	0	6	0	0	logfile
✔	8HXK	35079	2025-02-14	2023-01-04	3.8	4.30	4.02	4.0	0.005	1.00	0.0	0.06	14.61	0.01	2.159	12.80	0.00	9.1	90.9	0.0	-2.65	0.74	0.49	0.10	4.1	0.004	0.86	0.0	0.05	16.39	0.01	2.428	19.62	2.04	9.3	90.7	0.0	-2.22	1.93	0.83	0.72	0.66	10340	1273	6	0	9	0	0	logfile
✔	8EDN	28037	2025-02-11	2022-09-05	3.8	3.47	3.75	3.3	0.002	0.58	0.0	0.04	11.31	0.00	2.205	6.81	0.46	5.7	94.1	0.2	2.77	0.65	0.60	0.13	3.3	0.003	0.61	0.0	0.04	13.87	0.00	2.498	8.05	3.23	4.1	95.7	0.2	2.56	1.14	0.70	0.72	1.67	3683	579	1	0	0	0	0	logfile
✔	9GQo	51510	2025-02-11	2024-09-09	3.46	4.74	3.51	3.6	0.003	0.71	0.0	0.04	18.40	0.01	2.090	14.91	0.41	6.2	93.8	0.0	-1.32	0.77	0.70	0.13	3.6	0.004	0.86	0.0	0.04	18.13	0.00	1.907	20.42	3.87	7.2	92.8	0.0	-0.95	1.41	0.82	0.82	0.04	6716	880	2	0	3	0	0	logfile
✔	7RTU	24689	2025-02-11	2021-08-15	3.89	4.06	—	4.1	0.003	0.61	0.0	0.04	20.84	0.00	2.175	7.11	0.16	3.1	96.9	0.0	4.32	0.55	0.69	0.15	4.1	0.003	0.58	0.0	0.04	16.13	0.00	2.479	5.86	1.88	2.5	97.5	0.0	4.23	0.33	0.62	0.73	0.38	5962	754	6	0	12	0	0	logfile
✔	8XEL	38293	2025-02-14	2023-12-12	2.8	3.35	2.85	10.0	0.012	1.77	5.0	0.10	13.06	0.02	2.551	0.00	0.88	4.4	95.2	0.4	-0.52	0.19	0.01	0.17	2.9	0.004	0.79	0.0	0.05	16.62	0.01	2.224	75.69	4.40	9.0	91.0	0.0	-2.00	1.49	0.34	0.33	0.07	10119	1071	2	0	0	0	1837	logfile
✔	7W6P	32331	2025-02-12	2021-12-02	3.47	3.79	—	9.6	0.004	0.69	0.0	0.04	13.68	0.00	2.196	14.60	0.11	7.0	93.0	0.0	-0.94	0.22	0.11	0.18	8.7	0.003	0.73	0.0	0.04	15.73	0.00	2.510	14.78	2.55	6.0	94.0	0.0	-0.82	1.94	0.32	0.26	0.39	8408	1083	6	0	1	0	0	logfile
✔	8T23	40979	2025-02-11	2023-06-05	3.87	4.12	4.24	7.5	0.005	1.00	0.0	0.05	19.22	0.01	2.136	16.85	0.59	11.9	88.1	0.0	-3.06	0.59	0.48	0.19	7.3	0.004	0.83	0.0	0.05	18.35	0.01	2.474	17.64	3.66	11.0	89.0	0.0	-2.62	1.44	0.64	0.59	0.19	6451	781	6	0	6	0	0	logfile

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