Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7CMi	30407	2025-02-12	2020-07-27	2.9	3.36	—	3.3	0.006	1.01	0.0	0.05	16.61	0.01	1.904	7.49	1.44	7.2	91.4	1.4	-5.99	0.62	0.67	0.20	3.3	0.003	0.81	0.0	0.05	16.03	0.00	2.478	7.49	2.62	7.3	92.6	0.1	-0.28	1.08	0.68	0.85	1.76	7353	928	8	0	10	6	0	logfile
✘	8JTT	36652	2025-02-10	2023-06-22	3.87	4.32	3.71	4.4	0.006	0.87	0.0	0.05	12.93	0.02	2.250	7.82	0.00	4.0	96.0	0.0	-2.01	0.51	0.57	0.20	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3321	454	2	0	1	0	0	logfile
✔	9D85	46630	2025-02-12	2024-08-18	3.59	3.91	3.62	3.5	0.005	1.21	6.0	0.08	21.01	0.02	0.994	27.16	0.33	6.4	93.4	0.1	-1.10	0.68	0.44	0.21	3.6	0.004	0.83	0.0	0.05	21.79	0.00	2.217	21.50	2.76	4.8	95.2	0.0	-1.67	1.65	0.75	0.60	0.96	7201	739	5	65	0	0	0	logfile
✔	7RTM	24683	2025-02-13	2021-08-13	3.4	3.54	3.61	20.0	0.031	3.05	44.0	0.18	16.56	0.03	1.051	1.40	2.80	6.8	93.0	0.3	-1.12	0.10	0.04	0.21	3.5	0.003	0.84	0.0	0.04	16.09	0.00	2.331	10.74	2.70	4.6	95.3	0.1	-0.14	4.69	0.66	0.78	1.70	9161	1142	6	0	12	0	0	logfile
✔	7MiD	23847	2025-02-14	2021-04-16	3.56	4.10	—	3.9	0.010	1.02	0.0	0.06	20.37	0.01	0.918	14.61	5.73	8.6	91.3	0.1	-1.30	0.76	0.66	0.22	4.0	0.003	0.74	0.0	0.04	20.18	0.00	2.120	9.67	1.65	5.6	94.4	0.0	0.25	1.91	0.81	0.81	0.87	9789	1080	11	57	6	0	0	logfile
✔	6XWQ	10635	2025-02-13	2020-01-24	3.41	4.27	—	4.0	0.003	0.61	0.0	0.04	13.42	0.00	2.171	10.53	0.00	3.5	96.2	0.2	-2.80	0.73	0.80	0.22	4.0	0.003	0.75	0.0	0.04	15.58	0.00	2.550	11.84	2.19	2.6	97.4	0.0	1.23	1.16	0.72	0.84	0.43	9572	1281	6	0	0	0	0	logfile
✔	8U5N	41929	2025-02-11	2023-09-12	3.0	3.95	2.93	3.8	0.006	0.86	0.0	0.05	12.97	0.01	2.281	1.83	0.80	3.0	97.0	0.0	-0.95	0.55	0.67	0.23	3.7	0.004	0.97	0.0	0.05	16.22	0.00	2.390	16.08	2.99	2.6	97.4	0.0	1.34	4.59	0.55	0.77	1.00	4535	577	2	0	1	0	0	logfile
✔	9EVC	19998	2025-02-11	2024-03-28	3.73	3.99	3.80	3.9	0.004	0.80	0.0	0.05	16.47	0.01	2.095	16.28	0.43	6.7	93.3	0.0	-1.61	0.62	0.71	0.24	3.9	0.003	0.78	0.0	0.04	17.45	0.00	2.331	17.19	4.75	7.1	92.9	0.0	-0.45	0.68	0.62	0.74	0.50	6507	857	2	0	1	0	0	logfile
✔	8iZ9	35836	2025-02-14	2023-04-06	2.95	3.38	3.07	3.3	0.002	0.56	0.0	0.04	14.57	0.01	2.273	7.52	0.00	2.4	97.6	0.0	-0.94	0.52	0.61	0.25	3.3	0.003	0.63	0.0	0.04	16.54	0.00	2.555	6.96	1.69	2.8	97.2	0.0	1.32	1.25	0.64	0.83	1.19	9779	1224	2	0	1	0	0	logfile
✔	8oST	17164	2025-02-13	2023-04-20	3.69	3.89	3.67	3.9	0.002	0.52	0.0	0.04	22.67	0.01	2.203	5.42	0.27	1.2	98.8	0.0	0.21	0.55	0.52	0.26	3.9	0.003	0.53	0.0	0.04	22.36	0.00	2.414	5.53	1.87	2.4	97.6	0.0	0.25	1.45	0.62	0.62	-0.06	8955	432	4	69	2	0	4058	logfile
✔	6TA3	10421	2025-02-14	2019-10-29	3.8	4.18	—	3.9	0.024	2.45	4.0	0.08	18.96	0.01	0.439	210.72	16.02	0.8	99.2	0.0	1.86	0.67	0.49	0.26	4.0	0.005	0.95	0.0	0.05	18.50	0.01	1.331	26.63	5.24	3.3	96.6	0.1	-0.31	2.44	0.78	0.73	0.48	9491	1201	6	0	5	0	0	logfile
✔	8UUZ	42602	2025-02-11	2023-11-02	3.77	4.50	3.78	8.8	0.003	0.73	0.0	0.04	13.06	0.00	2.213	38.18	12.61	6.6	93.4	0.0	-1.81	0.61	0.33	0.27	8.8	0.004	0.86	0.0	0.05	16.44	0.00	2.571	27.43	4.78	5.6	94.4	0.0	-2.39	1.28	0.76	0.59	1.07	2258	300	2	0	0	0	0	logfile
✔	8S7E	19768	2025-02-12	2024-02-29	3.4	3.72	3.45	3.6	0.003	0.55	0.0	0.04	18.59	0.00	1.902	20.70	0.25	7.8	92.2	0.0	-1.51	0.59	0.55	0.28	3.6	0.003	0.60	0.0	0.05	18.95	0.00	2.378	13.21	2.96	5.6	94.4	0.0	-1.24	0.47	0.58	0.56	-0.12	7312	466	2	0	0	0	3648	logfile
✔	8iES	35392	2025-02-12	2023-02-15	3.73	4.01	3.68	4.0	0.003	1.16	0.0	0.04	13.70	0.00	2.268	5.19	0.00	6.0	94.0	0.0	-3.84	0.60	0.66	0.28	3.9	0.003	0.99	0.0	0.04	16.19	0.00	1.870	5.87	2.39	8.5	91.5	0.0	-1.04	1.49	0.66	0.77	0.79	7965	1026	2	0	3	0	0	logfile
✔	8TW4	41658	2025-02-11	2023-08-20	3.3	4.47	3.24	3.3	0.004	0.86	0.0	0.05	16.31	0.01	2.104	21.31	3.91	7.3	92.4	0.3	-2.23	0.65	0.57	0.29	3.3	0.003	0.82	0.0	0.05	16.49	0.00	2.428	16.37	3.75	6.9	92.9	0.1	-1.97	1.62	0.67	0.61	0.66	6401	828	15	0	12	0	0	logfile
✔	7S37	24818	2025-02-14	2021-09-04	3.2	3.10	3.27	2.3	0.006	1.04	0.0	0.05	14.85	0.01	2.211	4.66	0.11	3.7	96.3	0.0	-1.48	0.74	0.62	0.31	2.3	0.003	0.71	0.0	0.04	17.49	0.00	2.409	12.45	2.28	3.2	96.8	0.0	0.04	2.42	0.77	0.69	0.53	9392	1033	2	46	0	0	0	logfile
✔	8RNU	19395	2025-02-14	2024-01-11	3.4	5.41	2.49	3.9	0.010	1.04	0.0	0.05	17.19	0.01	2.104	28.22	0.32	10.1	89.9	0.0	-2.17	0.62	0.30	0.31	3.9	0.004	0.77	0.0	0.05	17.91	0.01	2.426	24.31	3.45	10.2	89.8	0.0	-2.07	0.65	0.65	0.39	0.44	10848	1320	12	0	0	0	0	logfile
✔	8YW4	39622	2025-02-13	2024-03-29	3.26	3.55	3.31	3.5	0.004	0.56	0.0	0.04	18.35	0.00	2.190	7.94	0.33	5.2	94.6	0.2	-0.25	0.56	0.66	0.32	3.5	0.004	0.62	0.0	0.04	18.54	0.00	2.519	6.94	3.58	5.3	94.5	0.2	0.65	1.19	0.63	0.83	1.67	8619	1082	6	0	0	0	0	logfile
✔	7S1Y	24812	2025-02-11	2021-09-02	3.6	3.90	—	3.9	0.005	0.77	2.0	0.04	12.89	0.01	1.566	12.97	0.00	7.2	92.6	0.2	-0.33	0.40	0.55	0.33	3.9	0.003	0.72	2.0	0.05	14.94	0.00	2.595	13.76	3.12	7.2	92.6	0.2	-0.26	0.58	0.51	0.64	0.65	6580	948	4	0	6	0	0	logfile
✔	7YR7	34048	2025-02-11	2022-08-09	3.8	4.63	4.40	4.6	0.008	1.25	1.0	0.09	25.59	0.01	2.385	7.94	4.74	16.7	83.3	0.0	-5.36	0.64	0.60	0.33	4.6	0.003	0.73	0.0	0.04	25.11	0.00	2.235	11.69	4.01	17.0	83.0	0.0	-3.02	1.70	0.66	0.64	-0.96	5102	330	7	118	0	0	0	logfile

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