Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6GTD	0062	2025-02-11	2018-06-18	4.24	4.28	—	3.9	0.009	1.26	0.0	0.08	23.09	0.01	2.138	13.01	0.00	19.8	80.2	0.0	-5.72	0.78	0.65	—	3.9	0.011	1.26	0.0	0.09	22.40	0.01	2.051	27.78	0.00	26.0	73.8	0.2	-4.17	1.33	0.79	0.68	—	6456	1269	4	66	0	0	0	logfile
✔	6GX5	0077	2025-02-10	2018-06-26	3.2	2.51	2.94	3.2	0.017	1.20	0.0	0.11	16.09	0.01	2.596	5.96	4.94	4.3	95.7	0.0	-3.50	0.85	0.88	5.60	3.2	0.004	0.70	0.0	0.05	18.11	0.00	2.599	5.50	4.12	4.3	95.7	0.0	-2.85	0.55	0.82	0.86	5.37	2133	282	3	0	0	0	0	logfile
✔	6H61	0143	2025-02-14	2018-07-25	4.02	4.20	3.87	4.0	0.007	0.84	0.0	0.05	13.66	0.00	2.107	14.74	0.18	9.5	90.5	0.0	-2.98	0.62	0.78	—	4.0	0.004	0.64	0.0	0.04	14.66	0.00	2.368	21.99	0.00	9.1	90.9	0.0	0.37	1.81	0.63	0.78	—	9912	660	4	30	1	0	4057	logfile
✔	6H66	0145	2025-02-14	2018-07-26	4.16	4.23	3.99	4.2	0.008	0.88	0.0	0.05	13.22	0.01	2.070	15.41	0.17	10.4	89.4	0.2	-3.09	0.61	0.76	—	4.2	0.002	0.64	0.0	0.04	15.12	0.00	2.223	18.52	0.00	7.7	92.3	0.0	0.19	1.83	0.62	0.77	—	10017	667	4	30	1	0	4120	logfile
✔	6H6B	0148	2025-02-12	2018-07-26	3.4	3.13	—	3.5	0.008	1.10	0.0	0.20	8.13	0.00	2.530	5.82	0.00	14.3	85.7	0.0	-4.80	0.44	0.74	5.60	3.2	0.005	0.94	0.0	0.18	12.07	0.00	2.355	4.83	2.75	17.9	82.1	0.0	-3.86	1.81	0.39	0.77	3.67	8060	580	10	0	0	0	4100	logfile
✔	6HBU	0190	2025-02-13	2018-08-13	3.09	3.04	—	3.1	0.009	1.18	0.0	0.06	11.56	0.01	1.965	4.88	0.00	4.9	94.6	0.5	-5.40	0.75	0.86	5.08	3.0	0.003	0.68	0.0	0.04	15.10	0.00	2.202	6.45	2.11	5.3	94.5	0.2	1.17	0.53	0.78	0.88	3.64	9146	1168	4	0	4	0	0	logfile
✔	6HD5	0201	2025-02-14	2018-08-17	4.8	6.01	—	5.9	0.001	0.40	0.0	0.03	8.70	0.00	2.289	4.36	0.10	10.5	88.4	1.1	-1.81	0.36	0.32	—	5.9	0.004	0.83	0.0	0.04	12.18	0.00	2.340	19.65	0.00	7.4	92.5	0.1	-0.91	2.10	0.46	0.58	—	9707	1234	3	0	0	0	0	logfile
✔	6HN4	0246	2025-02-11	2018-09-14	4.2	4.43	—	4.1	0.007	1.50	2.0	0.07	9.90	0.01	2.187	6.18	0.00	6.9	91.4	1.8	-2.18	0.73	0.70	—	4.2	0.004	0.73	0.0	0.05	11.46	0.00	2.414	10.93	0.00	6.9	93.1	0.0	-0.24	1.14	0.76	0.78	—	5702	700	3	0	6	0	0	logfile
✔	6HN5	0247	2025-02-12	2018-09-14	3.2	3.48	—	3.3	0.012	1.20	0.0	0.07	10.56	0.01	2.281	7.43	0.12	10.8	89.2	0.0	-3.94	0.76	0.77	3.25	3.3	0.003	0.73	0.0	0.05	12.99	0.00	2.447	8.92	1.85	6.8	93.2	0.0	-2.25	0.76	0.78	0.80	2.58	7869	953	7	0	11	0	0	logfile
✔	6HQE	0252	2025-02-13	2018-09-24	4.4	4.34	—	4.4	0.009	1.25	0.0	0.06	9.67	0.01	2.307	6.79	0.00	4.8	95.2	0.0	-7.05	0.65	0.85	—	4.4	0.004	0.79	0.0	0.04	12.00	0.01	2.499	16.93	0.00	4.5	95.5	0.0	1.25	0.97	0.64	0.85	—	9360	1196	52	0	0	0	0	logfile
✘	6HRE	0259	2025-02-11	2018-09-26	3.2	2.74	2.87	3.3	0.019	1.47	0.0	0.11	13.34	0.01	2.474	6.01	0.00	12.0	88.0	0.0	-4.17	0.32	0.80	4.40	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3522	462	6	0	0	0	0	logfile
✔	6HRF	0260	2025-02-11	2018-09-26	3.3	3.38	2.95	3.5	0.016	1.25	0.0	0.09	13.68	0.01	2.627	7.82	0.00	13.3	86.7	0.0	-4.08	0.38	0.74	2.93	3.4	0.005	0.83	0.0	0.05	16.55	0.00	2.500	6.71	2.74	5.6	94.4	0.0	-3.56	4.45	0.36	0.78	3.53	3522	462	6	0	0	0	0	logfile
✔	6HU7	0273	2025-02-11	2018-10-05	2.8	2.82	2.83	2.9	0.008	0.78	0.0	0.05	9.81	0.01	2.130	10.26	0.36	2.7	96.8	0.5	-3.47	0.49	0.84	4.61	2.9	0.003	0.62	0.0	0.04	15.38	0.00	2.503	7.49	1.28	2.4	97.3	0.3	2.81	1.61	0.54	0.87	3.35	4890	609	7	0	0	0	0	logfile
✔	6HUD	0274	2025-02-10	2018-10-06	4.0	4.06	—	4.3	0.007	1.12	0.0	0.07	8.28	0.01	2.020	5.62	0.00	8.2	91.8	0.0	-5.06	0.59	0.76	—	4.3	0.003	0.74	0.0	0.05	13.42	0.00	2.556	13.58	1.21	5.5	94.5	0.0	-4.92	1.48	0.56	0.78	—	2905	385	5	0	0	0	0	logfile
✔	6HV8	0287	2025-02-13	2018-10-10	4.4	4.51	—	4.4	0.009	1.62	2.0	0.08	10.20	0.01	1.472	8.97	1.31	22.1	77.3	0.6	-4.84	0.74	0.72	—	4.4	0.004	0.87	0.0	0.05	12.84	0.00	2.422	13.86	0.00	13.9	86.1	0.0	-2.94	0.99	0.75	0.72	—	9206	1184	3	0	2	0	0	logfile
✔	6i2i	0331	2025-02-12	2018-11-01	3.6	3.72	—	3.7	0.009	1.17	0.0	0.06	16.64	0.01	2.019	7.46	0.28	7.1	92.9	0.0	-5.22	0.74	0.74	2.16	3.8	0.003	0.71	0.0	0.05	15.81	0.01	1.932	10.81	2.76	2.7	97.3	0.0	-1.39	0.85	0.75	0.75	1.37	6830	856	4	0	5	0	0	logfile
✔	6N3C	0334	2025-02-11	2018-11-14	3.3	3.53	—	3.5	0.009	1.31	0.0	0.07	14.00	0.00	2.387	18.47	0.00	11.5	88.5	0.0	-5.01	0.52	0.83	4.06	3.5	0.008	0.78	0.0	0.04	15.93	0.00	2.490	12.06	7.37	11.2	88.8	0.0	-3.78	1.15	0.54	0.85	4.20	4260	640	20	0	0	0	0	logfile
✔	6N3Q	0336	2025-02-14	2018-11-16	3.68	4.01	—	4.0	0.006	1.03	0.0	0.05	10.91	0.01	2.308	4.48	0.67	3.2	96.8	0.0	-3.32	0.63	0.78	2.20	4.0	0.003	0.76	0.0	0.04	15.33	0.00	2.504	10.06	4.80	3.8	96.2	0.0	1.22	2.70	0.68	0.80	1.32	9931	1290	6	0	0	0	0	logfile
✔	6N4B	0339	2025-02-13	2018-11-18	3.0	3.84	—	3.8	0.011	1.40	4.0	0.09	9.76	0.01	1.855	20.11	0.84	2.7	97.3	0.0	-2.27	0.55	0.81	3.06	3.8	0.003	0.67	0.0	0.04	14.74	0.00	2.388	5.07	1.80	3.3	96.7	0.0	-0.31	0.62	0.54	0.81	2.64	8453	1121	6	0	3	0	0	logfile
✘	6N7W	0365	2025-02-12	2018-11-28	4.5	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7837	808	5	70	2	0	0	logfile

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