Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8RK4	19259	2025-02-12	2023-12-23	4.74	6.78	6.17	3.7	0.003	0.72	0.0	0.05	11.12	0.00	0.995	21.20	0.00	4.0	95.7	0.3	-1.38	0.94	0.75	—	3.8	0.002	0.67	0.0	0.04	11.73	0.00	2.474	8.31	0.00	7.4	92.4	0.3	-1.77	0.86	0.94	0.77	—	8373	1119	3	0	0	0	0	logfile
✔	8WoM	37692	2025-02-13	2023-10-07	3.5	3.76	3.53	3.7	0.005	1.04	5.0	0.07	11.19	0.01	1.004	3.36	0.00	9.1	90.9	0.0	-6.42	0.66	0.82	2.93	3.7	0.004	0.67	0.0	0.04	13.88	0.00	2.480	4.69	1.73	6.8	93.2	0.0	-2.73	0.73	0.66	0.82	1.83	9348	1217	2	0	1	0	0	logfile
✔	5FN3	3238	2025-02-14	2015-11-10	4.1	4.53	—	4.1	0.011	1.81	26.0	0.10	18.64	0.01	1.021	20.42	11.34	10.7	85.3	4.0	-1.54	0.66	0.60	—	4.1	0.004	0.86	0.0	0.04	14.22	0.01	2.382	17.99	0.00	9.0	90.2	0.8	-0.67	2.21	0.71	0.79	—	10291	1318	5	0	0	0	0	logfile
✔	8UPY	42457	2025-02-10	2023-10-23	2.8	3.43	3.00	2.9	0.012	1.65	0.0	0.12	28.73	0.01	1.040	88.62	0.00	0.0	0.0	0.0	—	0.18	0.52	—	2.9	0.006	0.78	0.0	0.04	27.61	0.01	2.038	25.14	0.00	0.0	0.0	0.0	—	1.07	0.22	0.75	—	1532	0	1	72	0	0	0	logfile
✔	7CZ6	30507	2025-02-11	2020-09-07	4.1	4.04	—	4.1	0.009	1.62	0.0	0.05	8.57	0.01	1.047	61.25	0.00	8.1	91.9	0.0	-1.66	0.68	0.64	—	4.1	0.005	0.82	0.0	0.05	11.15	0.01	2.534	12.15	0.00	5.6	94.4	0.0	-1.73	0.87	0.66	0.74	—	4535	630	5	0	0	0	0	logfile
✔	7RTM	24683	2025-02-13	2021-08-13	3.4	3.54	3.61	20.0	0.031	3.05	44.0	0.18	16.56	0.03	1.051	1.40	2.80	6.8	93.0	0.3	-1.12	0.10	0.04	0.21	3.5	0.003	0.84	0.0	0.04	16.09	0.00	2.331	10.74	2.70	4.6	95.3	0.1	-0.14	4.69	0.66	0.78	1.70	9161	1142	6	0	12	0	0	logfile
✔	8UPT	42455	2025-02-10	2023-10-23	2.8	3.38	2.84	2.9	0.016	2.20	0.0	0.16	30.45	0.01	1.072	99.56	0.00	0.0	0.0	0.0	—	0.23	0.59	—	2.9	0.006	0.72	0.0	0.04	27.67	0.01	2.087	17.90	0.00	0.0	0.0	0.0	—	1.00	0.28	0.88	—	1518	0	1	71	0	0	0	logfile
✔	8ZAQ	39884	2025-02-11	2024-04-25	2.6	2.80	2.62	2.8	0.003	0.59	0.0	0.04	16.95	0.01	1.092	8.94	2.39	2.6	97.4	0.0	1.48	0.69	0.89	4.17	2.8	0.004	0.59	0.0	0.04	16.83	0.01	2.601	6.25	3.29	1.2	98.8	0.0	2.38	0.27	0.67	0.89	4.33	6449	776	9	0	27	36	0	logfile
✔	6BX3	7303	2025-02-14	2017-12-16	4.3	4.71	—	4.4	0.007	1.49	0.0	0.08	12.65	0.01	1.094	24.88	0.97	18.8	81.2	0.1	-5.00	0.74	0.72	—	4.4	0.003	0.84	0.0	0.05	13.09	0.00	2.420	16.14	0.00	14.2	85.7	0.1	-3.34	1.36	0.74	0.71	—	10456	1413	7	0	0	0	0	logfile
✔	6XE6	22144	2025-02-11	2020-06-12	4.53	4.61	—	4.5	0.011	1.40	2.0	0.07	14.63	0.01	1.098	10.14	1.05	11.3	87.4	1.2	-4.98	0.52	0.76	—	4.5	0.003	0.81	0.0	0.05	13.58	0.00	2.414	13.70	0.00	10.3	89.3	0.4	-1.78	1.18	0.54	0.75	—	6530	826	2	0	6	0	0	logfile
✔	8WSR	37822	2025-02-14	2023-10-17	2.99	2.42	3.08	2.2	0.005	0.82	2.0	0.06	17.39	0.01	1.124	6.73	1.45	2.7	97.3	0.0	-0.22	0.83	0.81	2.83	2.2	0.002	0.52	0.0	0.04	18.05	0.00	2.073	3.17	2.17	2.3	97.7	0.0	0.91	0.41	0.82	0.85	2.58	6475	789	4	0	8	0	0	logfile
✔	6N1i	8903	2025-02-14	2018-11-08	3.58	3.63	—	3.6	0.009	1.13	0.0	0.06	9.87	0.01	1.147	27.10	0.00	2.4	97.6	0.0	-6.04	0.42	0.58	0.05	3.6	0.004	0.78	0.0	0.04	17.43	0.00	2.381	14.29	2.45	4.4	95.6	0.0	-0.47	2.30	0.56	0.82	1.82	11136	1360	16	0	0	0	0	logfile
✔	8CKV	16703	2025-02-14	2023-02-16	2.89	3.13	2.17	3.2	0.004	0.82	0.0	0.05	12.34	0.01	1.152	5.73	0.00	1.0	99.0	0.0	-0.51	0.61	0.76	4.15	3.2	0.004	0.57	0.0	0.04	15.90	0.00	2.646	6.28	1.31	1.3	98.7	0.0	1.53	0.44	0.62	0.79	4.01	9900	1272	6	0	0	0	0	logfile
✔	8XBW	38231	2025-02-10	2023-12-07	2.89	5.59	1.82	5.3	0.006	1.06	0.0	0.05	23.74	0.01	1.155	13.10	0.00	0.8	99.2	0.0	-0.65	0.76	0.71	-0.50	5.3	0.005	1.25	0.0	0.06	23.77	0.01	2.512	25.80	2.48	1.7	98.3	0.0	-1.70	2.03	0.81	0.82	0.77	2671	242	5	36	0	0	0	logfile
✔	6W8o	21576	2025-02-11	2020-03-20	3.4	4.30	—	4.1	0.029	1.20	3.0	0.05	17.62	0.01	1.161	20.04	11.79	6.7	93.3	0.0	-3.22	0.57	0.81	1.49	4.1	0.004	0.93	0.0	0.05	18.05	0.00	2.520	15.09	8.21	5.7	94.3	0.0	0.41	1.14	0.55	0.79	1.73	6332	832	2	0	0	0	0	logfile
✘	7PiJ	13438	2025-02-12	2021-08-20	3.78	4.14	—	4.1	0.015	1.17	0.0	0.05	13.54	0.01	1.166	13.45	0.11	10.6	89.3	0.1	-3.26	0.50	0.53	1.77	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8194	1068	8	0	0	16	0	logfile
✔	3JC2	3245	2025-02-11	2015-11-15	3.6	3.58	3.97	3.7	0.012	1.63	2.0	0.08	14.90	0.01	1.175	18.51	7.32	11.5	84.5	4.0	-4.52	0.22	0.59	1.48	3.6	0.003	0.88	0.0	0.04	17.26	0.00	2.574	12.43	1.95	7.9	91.5	0.6	-1.46	2.33	0.23	0.52	1.58	3911	482	4	0	32	0	0	logfile
✔	1oED	1044	2025-02-11	2003-03-24	4.0	3.94	—	10.4	0.014	2.29	3.0	0.10	17.23	0.01	1.183	224.94	19.76	5.2	92.7	2.1	-3.67	0.39	0.18	—	9.0	0.004	1.06	0.0	0.05	16.10	0.01	2.547	22.89	1.91	2.3	97.7	0.0	1.50	3.42	0.64	0.46	—	4926	636	5	0	0	0	0	logfile
✔	8CQB	16794	2025-02-12	2023-03-04	3.7	3.96	3.70	3.9	0.003	0.64	0.0	0.04	18.67	0.00	1.193	11.28	1.29	6.1	93.5	0.4	-0.44	0.68	0.74	1.89	3.9	0.004	0.74	1.0	0.04	18.84	0.00	1.898	11.34	1.64	6.4	93.2	0.4	0.16	0.51	0.69	0.75	1.35	7688	956	6	2	4	0	0	logfile
✔	8GRo	34210	2025-02-14	2022-09-02	3.5	3.98	3.66	3.9	0.013	1.67	17.0	0.11	25.25	0.01	1.194	18.95	41.49	16.3	77.1	6.6	-5.21	0.60	0.74	1.94	3.9	0.004	0.87	0.0	0.04	18.71	0.01	2.475	13.81	4.77	11.4	88.3	0.3	-0.57	1.30	0.57	0.81	1.64	10624	1322	2	0	0	0	0	logfile

• ← previous
• Page 2 of 255
• next →