Table showing results for February 2025

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peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9C4N	45191	2025-02-10	2024-06-04	2.9	2.74	—	3.0	0.013	1.70	0.0	0.06	9.18	0.01	2.779	0.00	0.00	14.3	85.7	0.0	-0.15	0.12	0.70	7.51	3.0	0.060	1.79	1.0	0.22	23.53	0.02	2.477	0.00	25.00	0.0	100.0	0.0	-6.32	1.38	0.19	0.79	5.31	69	9	1	0	0	0	0	logfile
✘	5X1G	6701	2025-02-10	2017-01-25	4.5	7.89	—	37.0	0.008	1.42	0.0	0.05	10.05	0.01	2.345	27.78	0.00	6.9	93.1	0.0	-2.75	0.00	0.01	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	155	31	1	0	0	0	0	logfile
✘	5A7U	3079	2025-02-10	2015-07-10	4.8	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	455	27	2	0	1	0	231	logfile
✔	7DA4	30622	2025-02-10	2020-10-14	4.24	3.75	—	4.2	0.010	1.54	0.0	0.08	17.16	0.01	2.245	79.80	0.00	50.0	50.0	0.0	-8.65	0.39	0.66	—	4.3	0.004	0.93	0.0	0.04	11.82	0.00	2.605	10.10	0.00	20.0	80.0	0.0	-5.69	3.09	0.39	0.61	—	507	66	3	0	0	0	0	logfile
✔	9HGS	52166	2025-02-10	2024-11-20	3.0	2.93	2.85	3.2	0.010	0.99	0.0	0.08	18.25	0.01	2.341	0.92	1.89	11.3	88.7	0.0	-4.52	0.26	0.73	2.80	3.2	0.002	0.47	0.0	0.05	18.05	0.00	2.640	1.85	3.77	8.5	91.5	0.0	-4.24	0.53	0.26	0.76	3.58	526	75	1	0	0	0	0	logfile
✔	9Eo7	19846	2025-02-10	2024-03-14	2.8	2.99	2.48	3.0	0.009	1.59	1.0	0.10	12.22	0.01	2.583	3.31	1.47	6.7	93.3	0.0	-4.16	0.28	0.88	5.19	3.0	0.002	0.54	0.0	0.05	13.60	0.01	2.543	6.71	2.94	1.3	98.7	0.0	-1.78	0.74	0.27	0.87	3.36	595	77	1	0	0	0	0	logfile
✔	9EoE	19852	2025-02-10	2024-03-14	2.3	2.15	2.26	2.2	0.009	1.54	2.0	0.10	14.88	0.01	2.621	4.14	4.41	8.0	92.0	0.0	-3.08	0.21	0.80	6.35	2.2	0.005	0.82	0.0	0.06	16.92	0.01	2.631	1.68	4.41	4.0	96.0	0.0	-2.35	1.27	0.27	0.84	7.38	595	77	1	0	0	0	0	logfile
✔	7UiU	26553	2025-02-10	2022-03-29	2.8	3.11	2.72	3.1	0.004	0.62	0.0	0.04	13.60	0.00	2.356	3.35	0.00	4.8	95.2	0.0	-2.09	0.28	0.82	1.99	3.3	0.005	0.90	0.0	0.04	18.25	0.00	2.504	8.38	1.67	6.0	94.0	0.0	-2.70	1.37	0.28	0.89	2.33	607	85	1	0	0	0	0	logfile
✔	6TGN	10499	2025-02-10	2019-11-17	3.9	3.83	—	4.0	0.010	1.73	0.0	0.12	11.93	0.01	2.161	5.17	1.39	4.7	95.3	0.0	-3.57	0.54	0.90	1.73	4.0	0.004	1.01	0.0	0.05	15.88	0.00	2.547	6.64	4.17	2.3	97.7	0.0	-0.12	1.13	0.53	0.82	0.52	672	88	1	0	0	0	0	logfile
✔	8P34	17383	2025-02-10	2023-05-17	2.61	2.80	2.24	2.8	0.009	1.32	0.0	0.08	11.05	0.01	2.651	0.69	0.00	5.4	94.6	0.0	-1.84	0.29	0.90	7.34	2.8	0.002	0.47	0.0	0.05	14.27	0.00	2.698	0.69	0.00	3.3	96.7	0.0	-1.59	0.32	0.28	0.88	6.21	711	94	1	0	0	0	0	logfile
✔	7KU5	23034	2025-02-10	2020-11-24	3.76	3.63	—	3.9	0.006	1.29	0.0	0.07	14.85	0.01	2.420	3.63	0.00	12.8	87.2	0.0	-5.41	0.23	0.65	-0.48	3.9	0.003	0.67	0.0	0.05	15.81	0.01	2.630	10.16	1.67	11.6	88.4	0.0	-1.88	1.17	0.24	0.70	2.01	750	88	2	0	4	0	0	logfile
✔	5LiJ	4054	2025-02-10	2016-07-14	4.2	3.63	—	4.2	0.009	2.92	4.0	0.17	15.82	0.01	2.249	25.64	0.00	10.7	89.3	0.0	-6.36	0.85	0.76	—	3.8	0.003	0.99	0.0	0.04	8.55	0.00	2.570	10.52	0.00	26.7	73.3	0.0	-5.94	0.59	0.85	0.77	—	761	152	1	0	0	0	0	logfile
✔	8A05	15048	2025-02-10	2022-05-26	3.4	3.47	3.11	3.5	0.002	0.43	0.0	0.05	12.67	0.00	2.328	2.02	0.00	2.2	97.8	0.0	0.42	0.37	0.84	2.71	3.5	0.002	0.46	0.0	0.05	14.53	0.00	2.627	2.02	1.20	2.2	97.8	0.0	0.38	0.20	0.36	0.85	2.71	764	91	2	0	5	0	0	logfile
✔	6QJP	4565	2025-02-10	2019-01-24	3.5	3.64	2.32	4.1	0.009	1.01	0.0	0.07	9.52	0.01	2.605	1.16	0.00	3.2	96.8	0.0	-2.50	0.37	0.74	3.05	4.2	0.002	0.60	0.0	0.05	12.51	0.00	2.600	7.52	3.92	0.0	100.0	0.0	-2.97	1.60	0.31	0.71	2.85	816	105	3	0	0	0	0	logfile
✔	6QJM	4564	2025-02-10	2019-01-24	3.3	3.49	1.95	3.4	0.010	1.01	0.0	0.07	8.06	0.01	2.408	6.17	0.00	9.1	90.9	0.0	-2.36	0.38	0.76	3.31	3.5	0.003	0.57	0.0	0.05	13.51	0.00	2.622	3.93	2.86	2.0	98.0	0.0	-2.41	1.60	0.33	0.73	3.95	846	111	3	0	0	0	0	logfile
✔	8TiF	41286	2025-02-10	2023-07-19	3.89	3.95	3.71	4.1	0.005	0.55	0.0	0.04	17.04	0.00	2.317	8.78	1.02	1.6	98.4	0.0	0.15	0.23	0.85	1.30	4.1	0.004	0.54	0.0	0.04	17.08	0.00	2.619	4.39	5.10	1.6	98.4	0.0	0.67	0.30	0.22	0.85	3.19	889	131	1	0	0	0	0	logfile
✔	9HGR	52165	2025-02-10	2024-11-20	2.7	2.06	2.33	2.7	0.003	0.47	0.0	0.05	14.29	0.00	2.569	2.04	0.00	3.0	97.0	0.0	-3.44	0.27	0.76	6.46	2.7	0.002	0.45	0.0	0.05	15.99	0.00	2.647	0.00	6.38	7.5	92.5	0.0	-3.67	0.41	0.27	0.77	6.46	960	142	2	0	0	0	0	logfile
✔	8iKS	35520	2025-02-10	2023-03-01	3.75	3.73	3.52	3.2	0.018	4.07	8.0	0.24	18.13	0.00	1.885	50.36	0.00	8.3	91.7	0.0	-5.59	0.34	0.66	1.82	3.2	0.032	3.03	0.0	0.15	24.79	0.01	2.274	79.95	18.75	47.9	52.1	0.0	-6.94	1.63	0.35	0.69	2.00	1024	144	16	0	0	0	0	logfile
✘	5M5H	4155	2025-02-10	2016-10-21	4.5	2.29	—	2.2	0.007	1.50	0.0	0.08	12.37	0.01	2.186	39.89	0.00	8.7	88.9	2.4	-5.94	0.14	0.14	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	1086	132	1	0	0	0	0	logfile
✔	7US9	26729	2025-02-10	2022-04-23	3.8	3.84	3.64	3.9	0.015	1.58	0.0	0.11	7.49	0.01	2.489	3.45	0.00	2.3	97.7	0.0	1.07	0.59	0.74	4.43	3.8	0.003	0.84	0.0	0.11	12.30	0.01	2.458	5.92	1.23	3.9	96.1	0.0	0.19	1.45	0.60	0.77	2.97	1127	145	3	0	4	0	0	logfile

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