Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8QCS	18334	2025-02-10	2023-08-28	2.9	3.25	2.95	3.2	0.003	0.57	0.0	0.04	15.23	0.00	2.301	7.00	0.00	2.7	97.3	0.0	0.62	0.56	0.82	3.12	3.2	0.003	0.63	0.0	0.04	16.54	0.00	2.536	6.39	1.70	3.1	96.9	0.0	2.39	1.20	0.52	0.79	2.65	3241	417	1	0	0	0	0	logfile
✔	9AYB	43984	2025-02-11	2024-03-07	3.19	3.65	3.20	3.6	0.003	0.52	0.0	0.04	12.73	0.00	2.313	2.08	0.57	0.9	99.1	0.0	1.23	0.44	0.79	2.78	3.6	0.002	0.51	0.0	0.04	14.11	0.00	2.617	3.42	1.70	1.4	98.6	0.0	1.88	0.32	0.43	0.78	2.01	3347	428	1	0	0	0	0	logfile
✔	8XW4	38730	2025-02-11	2024-01-15	3.84	4.08	3.72	4.0	0.006	0.87	0.0	0.05	14.64	0.00	1.751	14.90	0.00	10.8	89.2	0.0	-0.84	0.54	0.78	1.09	4.1	0.003	0.75	0.0	0.04	17.11	0.00	2.521	10.56	3.27	8.0	92.0	0.0	0.19	0.57	0.54	0.77	0.79	5027	619	1	0	0	0	0	logfile
✔	8V4N	42974	2025-02-10	2023-11-29	2.43	2.63	2.50	2.6	0.002	0.49	0.0	0.04	14.21	0.00	2.260	4.14	0.93	2.3	97.7	0.0	0.80	0.31	0.85	3.24	2.6	0.002	0.54	0.0	0.04	17.77	0.00	2.652	1.71	2.80	1.9	98.1	0.0	0.88	0.99	0.31	0.87	3.51	2067	263	1	0	0	0	0	logfile
✔	8Woi	37690	2025-02-13	2023-10-07	3.4	3.58	3.35	3.6	0.005	1.20	6.0	0.06	10.49	0.01	1.818	2.83	0.10	9.1	90.8	0.1	-6.42	0.68	0.83	3.78	3.6	0.002	0.65	0.0	0.04	13.82	0.00	2.460	4.33	1.02	7.2	92.8	0.0	-2.90	0.62	0.68	0.85	2.81	9324	1217	1	0	0	0	0	logfile
✔	8U3F	41860	2025-02-11	2023-09-07	3.31	3.63	3.18	3.6	0.005	0.62	0.0	0.04	12.99	0.01	2.265	6.58	0.00	2.1	97.9	0.0	-1.54	0.57	0.87	2.88	3.6	0.004	0.60	0.0	0.04	14.67	0.00	2.565	6.28	2.22	2.6	97.4	0.0	1.80	0.35	0.55	0.87	2.13	3410	437	1	0	0	0	0	logfile
✔	8FEH	29027	2025-02-10	2022-12-06	3.28	4.31	3.36	3.4	0.008	1.02	0.0	0.07	14.17	0.01	2.317	7.23	1.83	7.1	92.9	0.0	-3.45	0.45	0.76	1.53	3.5	0.004	0.66	0.0	0.04	15.12	0.00	2.545	9.48	1.38	5.3	94.7	0.0	-1.63	2.58	0.47	0.89	2.23	1993	268	1	0	0	0	0	logfile
✔	8U3D	41858	2025-02-11	2023-09-07	2.83	3.27	2.77	3.2	0.009	0.78	0.0	0.05	12.53	0.01	2.284	5.37	0.00	5.0	95.0	0.0	-2.36	0.56	0.87	3.83	3.2	0.003	0.59	0.0	0.04	14.52	0.01	2.610	5.37	1.70	4.0	96.0	0.0	1.67	0.91	0.54	0.87	3.21	3338	427	1	0	0	0	0	logfile
✔	8KBY	37087	2025-02-11	2023-08-04	3.23	3.45	3.19	3.5	0.003	0.91	0.0	0.05	14.41	0.00	2.288	12.26	0.00	12.2	87.4	0.4	-4.87	0.50	0.47	2.38	3.4	0.004	0.86	0.0	0.05	15.53	0.00	2.199	11.00	6.91	17.0	83.0	0.0	-5.14	1.75	0.57	0.62	2.85	5050	830	1	0	0	0	0	logfile
✔	8iZP	35867	2025-02-14	2023-04-07	3.31	3.72	3.43	3.7	0.015	2.04	19.0	0.13	17.71	0.01	2.316	9.67	15.23	3.7	96.2	0.2	-1.61	0.67	0.82	1.87	3.7	0.003	0.67	0.0	0.04	16.72	0.00	2.501	5.68	4.10	2.2	97.8	0.0	0.92	1.65	0.62	0.82	1.62	9425	1210	1	0	0	0	0	logfile
✔	8SZ4	40901	2025-02-11	2023-05-26	2.86	3.08	2.87	3.2	0.003	0.57	0.0	0.04	9.74	0.00	2.230	2.07	0.00	2.0	98.0	0.0	-0.45	0.18	0.26	2.84	3.1	0.003	0.65	0.0	0.04	13.60	0.00	2.509	4.38	1.67	2.4	97.6	0.0	1.63	2.05	0.44	0.68	1.14	4346	259	1	0	0	0	2184	logfile
✔	8QCY	18337	2025-02-10	2023-08-28	2.9	3.36	3.07	3.3	0.004	0.58	0.0	0.04	11.88	0.00	2.245	5.86	0.00	1.4	98.6	0.0	0.40	0.55	0.78	3.99	3.3	0.003	0.64	0.0	0.04	15.64	0.00	2.582	6.01	2.84	1.9	98.1	0.0	2.30	1.25	0.48	0.74	2.71	3273	421	1	0	0	0	0	logfile
✔	8XW1	38727	2025-02-11	2024-01-15	4.49	4.73	4.24	4.6	0.005	0.82	0.0	0.05	14.01	0.01	2.139	20.22	0.19	7.2	92.8	0.0	-0.07	0.59	0.82	—	4.6	0.003	0.69	0.0	0.04	14.24	0.00	2.335	12.07	0.00	5.3	94.7	0.0	1.05	1.06	0.58	0.81	—	5082	634	1	0	0	0	0	logfile
✔	8FTK	29439	2025-02-12	2023-01-12	4.56	5.56	4.86	4.4	0.002	0.58	0.0	0.04	4.66	0.00	2.125	4.21	0.00	5.9	94.1	0.0	0.74	0.85	0.81	—	4.4	0.004	0.60	0.0	0.04	4.95	0.00	2.287	2.98	0.00	8.8	91.2	0.0	-0.04	1.28	0.86	0.83	—	7840	1584	1	0	0	0	0	logfile
✔	8X5X	38074	2025-02-10	2023-11-20	3.5	3.67	4.06	3.8	0.004	0.77	0.0	0.04	14.15	0.00	2.094	14.97	0.43	5.3	94.7	0.0	1.03	0.42	0.53	1.42	3.8	0.003	0.75	0.0	0.04	17.43	0.00	2.642	10.53	4.74	4.1	95.9	0.0	1.19	0.80	0.44	0.56	1.05	2105	256	1	0	0	0	0	logfile
✔	8U3E	41859	2025-02-11	2023-09-07	3.19	3.64	3.08	3.6	0.009	0.69	0.0	0.05	13.04	0.00	2.280	5.97	0.00	6.4	93.6	0.0	-3.53	0.54	0.83	4.61	3.6	0.003	0.59	0.0	0.04	14.74	0.01	2.613	4.03	1.14	3.3	96.7	0.0	1.13	0.38	0.51	0.85	3.21	3338	427	1	0	0	0	0	logfile
✔	8iZ8	35835	2025-02-14	2023-04-06	3.13	3.49	3.24	3.4	0.002	0.50	0.0	0.04	14.07	0.00	2.264	6.14	0.00	1.9	98.1	0.0	-0.97	0.55	0.71	0.44	3.4	0.002	0.56	0.0	0.04	16.37	0.00	2.596	7.50	1.96	2.9	97.1	0.0	1.73	1.19	0.59	0.80	1.03	9805	1230	1	0	0	0	0	logfile
✔	8UPT	42455	2025-02-10	2023-10-23	2.8	3.38	2.84	2.9	0.016	2.20	0.0	0.16	30.45	0.01	1.072	99.56	0.00	0.0	0.0	0.0	—	0.23	0.59	—	2.9	0.006	0.72	0.0	0.04	27.67	0.01	2.087	17.90	0.00	0.0	0.0	0.0	—	1.00	0.28	0.88	—	1518	0	1	71	0	0	0	logfile
✘	8WJG	37579	2025-02-11	2023-09-25	3.0	3.18	2.87	3.3	0.005	1.21	0.0	0.06	15.28	0.01	2.211	6.71	2.03	2.6	97.4	0.0	0.84	0.51	0.73	1.85	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3952	533	1	0	0	0	0	logfile
✔	8V85	43023	2025-02-10	2023-12-04	2.9	5.78	4.39	8.6	0.002	0.50	0.0	0.04	8.92	0.00	2.342	5.38	0.00	2.1	97.9	0.0	1.33	0.20	0.11	0.76	5.6	0.004	0.93	0.0	0.04	13.66	0.00	2.424	28.18	0.58	5.6	94.4	0.0	-0.43	4.16	0.35	0.28	0.83	1539	197	1	0	0	0	0	logfile

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