Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9C4B	45180	2025-02-11	2024-06-03	3.4	3.78	3.57	3.7	0.004	0.73	1.0	0.05	16.50	0.00	1.827	10.64	0.89	5.9	93.3	0.8	-0.46	0.62	0.72	1.52	3.7	0.003	0.56	0.0	0.04	17.01	0.00	2.386	7.04	1.78	6.7	93.0	0.3	-0.41	0.52	0.62	0.72	1.61	6110	393	1	0	0	0	3030	logfile
✔	8iZ8	35835	2025-02-14	2023-04-06	3.13	3.49	3.24	3.4	0.002	0.50	0.0	0.04	14.07	0.00	2.264	6.14	0.00	1.9	98.1	0.0	-0.97	0.55	0.71	0.44	3.4	0.002	0.56	0.0	0.04	16.37	0.00	2.596	7.50	1.96	2.9	97.1	0.0	1.73	1.19	0.59	0.80	1.03	9805	1230	1	0	0	0	0	logfile
✔	8KBY	37087	2025-02-11	2023-08-04	3.23	3.45	3.19	3.5	0.003	0.91	0.0	0.05	14.41	0.00	2.288	12.26	0.00	12.2	87.4	0.4	-4.87	0.50	0.47	2.38	3.4	0.004	0.86	0.0	0.05	15.53	0.00	2.199	11.00	6.91	17.0	83.0	0.0	-5.14	1.75	0.57	0.62	2.85	5050	830	1	0	0	0	0	logfile
✔	9Eo7	19846	2025-02-10	2024-03-14	2.8	2.99	2.48	3.0	0.009	1.59	1.0	0.10	12.22	0.01	2.583	3.31	1.47	6.7	93.3	0.0	-4.16	0.28	0.88	5.19	3.0	0.002	0.54	0.0	0.05	13.60	0.01	2.543	6.71	2.94	1.3	98.7	0.0	-1.78	0.74	0.27	0.87	3.36	595	77	1	0	0	0	0	logfile
✔	8XW4	38730	2025-02-11	2024-01-15	3.84	4.08	3.72	4.0	0.006	0.87	0.0	0.05	14.64	0.00	1.751	14.90	0.00	10.8	89.2	0.0	-0.84	0.54	0.78	1.09	4.1	0.003	0.75	0.0	0.04	17.11	0.00	2.521	10.56	3.27	8.0	92.0	0.0	0.19	0.57	0.54	0.77	0.79	5027	619	1	0	0	0	0	logfile
✔	8iZP	35867	2025-02-14	2023-04-07	3.31	3.72	3.43	3.7	0.015	2.04	19.0	0.13	17.71	0.01	2.316	9.67	15.23	3.7	96.2	0.2	-1.61	0.67	0.82	1.87	3.7	0.003	0.67	0.0	0.04	16.72	0.00	2.501	5.68	4.10	2.2	97.8	0.0	0.92	1.65	0.62	0.82	1.62	9425	1210	1	0	0	0	0	logfile
✔	8V4N	42974	2025-02-10	2023-11-29	2.43	2.63	2.50	2.6	0.002	0.49	0.0	0.04	14.21	0.00	2.260	4.14	0.93	2.3	97.7	0.0	0.80	0.31	0.85	3.24	2.6	0.002	0.54	0.0	0.04	17.77	0.00	2.652	1.71	2.80	1.9	98.1	0.0	0.88	0.99	0.31	0.87	3.51	2067	263	1	0	0	0	0	logfile
✔	8Z7R	39825	2025-02-10	2024-04-21	3.15	3.31	3.10	3.4	0.005	0.77	0.0	0.04	16.63	0.01	2.214	9.16	0.60	3.9	96.1	0.0	-0.35	0.53	0.79	2.54	3.4	0.004	0.68	0.0	0.04	16.63	0.00	2.595	9.96	4.20	2.9	97.1	0.0	1.64	0.41	0.57	0.81	1.81	3098	387	1	0	0	0	0	logfile
✔	8JQG	36571	2025-02-13	2023-06-14	3.72	3.93	3.77	3.9	0.004	0.82	0.0	0.05	17.22	0.00	2.217	22.35	0.00	5.1	94.9	0.0	-0.73	0.76	0.75	1.76	3.9	0.003	0.72	0.0	0.04	18.19	0.00	2.411	13.57	2.38	4.5	95.5	0.0	-0.02	0.61	0.76	0.77	1.28	8708	1061	1	0	0	0	0	logfile
✔	8WVV	37873	2025-02-11	2023-10-24	3.35	2.72	3.57	3.5	0.007	1.26	13.0	0.08	17.09	0.01	1.693	25.67	1.28	7.7	92.3	0.0	-2.78	0.74	0.74	0.66	3.5	0.003	0.71	0.0	0.04	17.59	0.00	2.542	14.62	3.99	5.1	94.9	0.0	-1.63	1.04	0.76	0.79	1.05	5596	718	1	0	0	0	0	logfile
✔	8QCS	18334	2025-02-10	2023-08-28	2.9	3.25	2.95	3.2	0.003	0.57	0.0	0.04	15.23	0.00	2.301	7.00	0.00	2.7	97.3	0.0	0.62	0.56	0.82	3.12	3.2	0.003	0.63	0.0	0.04	16.54	0.00	2.536	6.39	1.70	3.1	96.9	0.0	2.39	1.20	0.52	0.79	2.65	3241	417	1	0	0	0	0	logfile
✔	8SZ4	40901	2025-02-11	2023-05-26	2.86	3.08	2.87	3.2	0.003	0.57	0.0	0.04	9.74	0.00	2.230	2.07	0.00	2.0	98.0	0.0	-0.45	0.18	0.26	2.84	3.1	0.003	0.65	0.0	0.04	13.60	0.00	2.509	4.38	1.67	2.4	97.6	0.0	1.63	2.05	0.44	0.68	1.14	4346	259	1	0	0	0	2184	logfile
✔	8U3D	41858	2025-02-11	2023-09-07	2.83	3.27	2.77	3.2	0.009	0.78	0.0	0.05	12.53	0.01	2.284	5.37	0.00	5.0	95.0	0.0	-2.36	0.56	0.87	3.83	3.2	0.003	0.59	0.0	0.04	14.52	0.01	2.610	5.37	1.70	4.0	96.0	0.0	1.67	0.91	0.54	0.87	3.21	3338	427	1	0	0	0	0	logfile
✔	8Woi	37690	2025-02-13	2023-10-07	3.4	3.58	3.35	3.6	0.005	1.20	6.0	0.06	10.49	0.01	1.818	2.83	0.10	9.1	90.8	0.1	-6.42	0.68	0.83	3.78	3.6	0.002	0.65	0.0	0.04	13.82	0.00	2.460	4.33	1.02	7.2	92.8	0.0	-2.90	0.62	0.68	0.85	2.81	9324	1217	1	0	0	0	0	logfile
✔	9AYB	43984	2025-02-11	2024-03-07	3.19	3.65	3.20	3.6	0.003	0.52	0.0	0.04	12.73	0.00	2.313	2.08	0.57	0.9	99.1	0.0	1.23	0.44	0.79	2.78	3.6	0.002	0.51	0.0	0.04	14.11	0.00	2.617	3.42	1.70	1.4	98.6	0.0	1.88	0.32	0.43	0.78	2.01	3347	428	1	0	0	0	0	logfile
✔	8V85	43023	2025-02-10	2023-12-04	2.9	5.78	4.39	8.6	0.002	0.50	0.0	0.04	8.92	0.00	2.342	5.38	0.00	2.1	97.9	0.0	1.33	0.20	0.11	0.76	5.6	0.004	0.93	0.0	0.04	13.66	0.00	2.424	28.18	0.58	5.6	94.4	0.0	-0.43	4.16	0.35	0.28	0.83	1539	197	1	0	0	0	0	logfile
✔	8JWH	36683	2025-02-11	2023-06-29	3.34	2.70	3.24	3.4	0.004	0.84	0.0	0.05	19.18	0.01	2.135	16.08	0.76	4.7	95.3	0.0	-0.43	0.74	0.77	1.81	3.4	0.003	0.69	0.0	0.04	19.35	0.00	2.527	12.08	2.66	5.2	94.8	0.0	0.48	1.26	0.73	0.76	1.37	4870	597	1	0	0	0	0	logfile
✔	8Wi3	37556	2025-02-13	2023-09-24	3.38	3.85	3.53	3.8	0.004	0.68	0.0	0.04	17.11	0.00	2.187	6.04	0.38	6.6	93.3	0.1	1.08	0.63	0.76	0.50	3.8	0.004	0.64	0.0	0.04	17.62	0.00	2.453	4.53	3.85	7.1	92.8	0.2	1.29	0.34	0.63	0.80	0.52	9489	1208	1	0	0	0	0	logfile
✔	9EoE	19852	2025-02-10	2024-03-14	2.3	2.15	2.26	2.2	0.009	1.54	2.0	0.10	14.88	0.01	2.621	4.14	4.41	8.0	92.0	0.0	-3.08	0.21	0.80	6.35	2.2	0.005	0.82	0.0	0.06	16.92	0.01	2.631	1.68	4.41	4.0	96.0	0.0	-2.35	1.27	0.27	0.84	7.38	595	77	1	0	0	0	0	logfile
✔	8WVW	37874	2025-02-11	2023-10-24	3.53	3.61	3.38	3.6	0.019	1.91	13.0	0.08	17.27	0.01	2.124	18.80	3.34	8.9	91.0	0.1	-3.16	0.67	0.84	0.85	3.6	0.004	0.70	0.0	0.04	16.71	0.00	2.575	4.45	2.71	7.2	92.8	0.0	-1.78	1.37	0.70	0.85	1.41	5594	722	1	0	0	0	0	logfile

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