Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7Y5W	33627	2025-02-13	2022-06-17	3.5	4.54	3.56	3.7	0.003	0.53	0.0	0.03	27.56	0.00	2.102	12.41	0.00	2.0	98.0	0.0	2.53	0.81	0.70	0.94	3.7	0.007	0.87	0.0	0.04	29.06	0.01	2.018	22.89	5.06	2.5	97.5	0.0	1.44	0.94	0.90	0.86	0.98	8811	579	10	202	0	0	0	logfile
✔	8iHJ	35446	2025-02-12	2023-02-22	3.07	3.50	3.25	3.5	0.002	0.47	0.0	0.04	16.68	0.00	2.152	5.68	0.11	3.3	96.7	0.0	-0.90	0.67	0.86	2.64	3.5	0.003	0.53	0.0	0.04	17.05	0.00	2.572	4.65	2.64	4.2	95.8	0.0	0.22	0.36	0.61	0.83	2.29	8509	1122	6	0	1	0	0	logfile
✔	8iLV	35547	2025-02-14	2023-03-04	3.19	3.48	3.26	3.5	0.003	0.53	0.0	0.04	18.37	0.00	2.073	8.16	0.26	3.9	96.1	0.0	-0.78	0.73	0.79	2.42	3.5	0.003	0.59	0.0	0.04	18.41	0.00	2.141	9.43	2.29	3.9	96.1	0.0	0.33	1.10	0.73	0.80	2.32	10218	1236	3	0	1	4	0	logfile
✔	8Q88	18249	2025-02-11	2023-08-18	2.95	2.99	2.96	3.1	0.011	1.82	1.0	0.09	9.88	0.01	2.489	0.85	0.25	4.3	95.7	0.0	-1.51	0.41	0.83	6.19	3.1	0.005	0.79	0.0	0.05	14.16	0.01	2.608	5.94	1.01	4.5	95.5	0.0	-2.61	1.32	0.39	0.87	5.02	3468	456	6	0	0	0	0	logfile
✔	8WC5	37431	2025-02-12	2023-09-11	3.3	2.84	2.93	3.0	0.006	1.09	3.0	0.08	14.80	0.01	2.206	10.49	1.80	6.6	93.4	0.0	-2.33	0.60	0.68	2.61	3.0	0.003	0.65	0.0	0.04	16.18	0.00	2.492	4.92	2.02	5.6	94.4	0.0	-1.20	1.29	0.62	0.73	1.96	8511	1111	6	0	1	0	0	logfile
✔	8JiM	36318	2025-02-13	2023-05-26	2.98	2.35	—	3.2	0.007	0.91	0.0	0.05	13.51	0.00	2.232	10.37	0.41	5.8	94.2	0.1	-1.91	0.75	0.79	2.75	3.2	0.003	0.65	0.0	0.04	16.10	0.00	2.543	5.94	2.03	3.4	96.6	0.0	-0.36	1.00	0.76	0.82	2.27	9051	1144	6	0	2	1	0	logfile
✔	8oSH	17153	2025-02-11	2023-04-18	4.9	5.59	5.45	4.9	0.006	0.94	0.0	0.06	3.38	0.00	2.299	5.83	0.00	11.2	88.7	0.1	-0.55	0.82	0.82	—	4.9	0.003	0.63	0.0	0.04	4.67	0.00	2.430	3.48	0.00	12.7	87.2	0.1	-1.18	0.53	0.83	0.85	—	6770	1372	5	0	0	0	0	logfile
✔	8Q2J	18109	2025-02-11	2023-08-02	2.23	2.02	2.19	2.2	0.011	1.72	0.0	0.08	11.08	0.01	2.490	0.14	0.00	1.8	98.2	0.0	-1.62	0.29	0.75	7.51	2.2	0.004	0.64	0.0	0.05	19.03	0.00	2.468	4.49	1.25	0.9	99.1	0.0	-1.93	2.29	0.43	0.90	7.16	3507	462	6	0	0	0	0	logfile
✔	8ZWH	60527	2025-02-10	2024-06-13	2.5	3.26	—	3.0	0.011	0.91	0.0	0.06	9.45	0.00	2.284	18.21	0.00	3.8	96.2	0.0	-4.12	0.42	0.85	2.37	3.0	0.002	0.52	0.0	0.05	11.71	0.00	2.631	6.43	1.32	5.0	95.0	0.0	-3.24	1.17	0.43	0.85	3.74	2268	330	6	0	0	0	0	logfile
✔	8EKD	28199	2025-02-11	2022-09-20	3.6	3.11	3.47	3.0	0.005	0.88	0.0	0.05	19.66	0.01	2.190	21.00	1.77	6.3	93.7	0.0	-1.67	0.49	0.63	1.30	3.1	0.003	0.77	0.0	0.04	17.42	0.01	2.493	17.53	5.90	7.0	93.0	0.0	-1.28	1.35	0.50	0.64	1.69	3239	411	4	0	1	0	0	logfile
✔	8JWF	36681	2025-02-14	2023-06-29	3.64	4.25	3.77	4.0	0.007	0.80	0.0	0.05	10.45	0.01	2.208	3.05	0.09	7.2	92.8	0.0	-3.42	0.69	0.74	1.48	4.0	0.003	0.65	0.0	0.04	14.03	0.00	2.514	7.41	1.93	5.6	94.4	0.0	0.39	2.34	0.71	0.76	0.77	9717	1204	2	0	1	0	0	logfile
✔	8K1L	36794	2025-02-14	2023-07-11	3.44	3.80	3.50	3.7	0.004	1.17	0.0	0.05	16.42	0.01	2.067	19.32	0.37	5.9	94.1	0.0	-1.16	0.65	0.85	1.91	3.7	0.003	0.64	0.0	0.04	16.77	0.00	2.588	9.11	2.93	5.8	94.1	0.2	0.25	0.38	0.66	0.84	1.80	10026	1271	3	0	1	0	0	logfile
✔	8K6L	36922	2025-02-11	2023-07-25	2.92	3.27	2.96	3.2	0.005	1.00	1.0	0.09	17.75	0.02	2.297	6.71	2.17	5.0	95.0	0.0	-2.44	0.63	0.80	2.79	3.2	0.003	0.61	0.0	0.05	15.25	0.00	2.556	2.20	1.93	3.0	97.0	0.0	1.66	0.58	0.60	0.82	2.75	4155	547	3	0	4	0	0	logfile
✔	8K3U	36861	2025-02-13	2023-07-17	3.06	3.51	3.21	3.5	0.009	1.07	0.0	0.06	16.05	0.00	2.072	18.03	0.73	5.9	94.0	0.2	-1.45	0.55	0.67	2.06	3.5	0.004	0.63	0.0	0.04	16.05	0.00	2.071	8.57	2.80	3.1	96.7	0.2	0.33	1.60	0.49	0.66	1.32	8914	1194	4	2	8	0	0	logfile
✔	8QKK	18464	2025-02-11	2023-09-15	3.23	3.44	3.28	3.6	0.002	0.49	0.0	0.04	14.14	0.00	2.132	9.00	0.00	2.9	97.1	0.0	2.28	0.62	0.79	1.22	3.6	0.004	1.16	1.0	0.05	15.86	0.00	2.529	9.27	1.68	1.9	98.1	0.0	1.66	0.79	0.64	0.80	1.23	5581	730	1	0	0	0	0	logfile
✔	8JJo	36361	2025-02-10	2023-05-31	3.4	3.75	3.53	3.8	0.003	0.64	0.0	0.04	17.70	0.00	2.184	10.68	0.31	5.7	94.3	0.0	-0.11	0.40	0.71	1.06	3.8	0.003	0.60	0.0	0.04	18.25	0.00	2.440	6.90	2.79	5.1	94.9	0.0	1.05	0.41	0.36	0.72	1.29	3016	375	2	0	1	0	0	logfile
✘	8AN2	15530	2025-02-13	2022-08-04	3.2	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	-1.32	—	—	3.54	—	—	—	—	—	—	—	—	—	—	—	—	—	-0.30	—	—	—	3.02	8657	1040	18	0	63	0	0	logfile
✔	8i39	35146	2025-02-13	2023-01-16	2.85	3.17	2.93	3.2	0.009	0.90	0.0	0.05	14.17	0.01	2.116	22.50	0.22	6.2	93.8	0.0	-5.71	0.59	0.78	3.76	3.1	0.003	0.66	0.0	0.04	15.72	0.00	2.605	5.44	2.08	3.8	96.2	0.0	-0.51	1.31	0.51	0.75	3.02	8413	1076	3	0	1	0	0	logfile
✔	8JiR	36325	2025-02-13	2023-05-27	2.57	3.54	2.61	3.3	0.010	1.02	3.0	0.06	15.93	0.01	1.972	12.47	6.61	7.0	92.5	0.5	-1.76	0.67	0.77	3.14	3.3	0.003	0.67	0.0	0.04	16.52	0.00	2.449	7.54	2.17	4.3	95.7	0.0	0.43	0.55	0.67	0.79	2.88	9014	1167	7	0	1	0	0	logfile
✔	7TYA	26171	2025-02-13	2022-02-11	3.07	3.91	3.07	3.6	0.015	1.81	0.0	0.09	14.95	0.01	2.203	3.85	0.22	4.2	95.8	0.0	-2.07	0.69	0.89	4.04	3.6	0.003	0.55	0.0	0.04	13.76	0.00	2.356	3.45	0.45	2.5	97.5	0.0	2.42	1.19	0.67	0.88	3.13	8617	1032	16	0	14	59	0	logfile

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