Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8i95	35257	2025-02-12	2023-02-06	2.88	3.13	2.89	3.2	0.004	0.61	0.0	0.04	14.09	0.00	2.195	7.07	1.15	5.2	94.8	0.0	0.10	0.63	0.79	3.85	3.2	0.004	0.59	0.0	0.04	14.88	0.00	2.545	5.98	2.04	5.0	95.0	0.0	0.16	0.27	0.62	0.79	3.54	8153	1121	7	0	1	0	0	logfile
✘	8BQV	16188	2025-02-12	2023-01-18	2.0	1.96	1.89	1.9	0.008	1.01	0.0	0.07	8.75	0.00	0.000	15.13	0.00	6.8	93.2	0.0	-2.59	0.54	0.77	8.69	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8595	1155	45	0	105	120	0	logfile
✔	7PLV	13503	2025-02-14	2021-09-01	3.5	4.06	3.57	3.5	0.005	0.81	0.0	0.05	15.02	0.01	1.732	4.61	0.00	0.4	99.6	0.0	-1.54	0.91	0.83	3.00	3.5	0.003	0.67	0.0	0.04	16.11	0.00	1.984	6.15	0.92	0.9	99.1	0.0	1.77	0.71	0.92	0.86	2.30	10139	1263	6	0	3	0	0	logfile
✔	7PMA	13526	2025-02-14	2021-09-02	3.6	4.07	3.61	3.5	0.004	0.88	1.0	0.05	15.93	0.01	1.732	6.45	0.09	0.2	99.8	0.0	-1.07	0.90	0.82	2.92	3.5	0.005	0.98	1.0	0.05	15.68	0.00	1.992	8.65	0.84	1.7	98.2	0.1	1.80	1.29	0.91	0.84	2.41	10066	1249	7	0	5	0	0	logfile
✔	7PLX	13505	2025-02-14	2021-09-01	3.6	4.05	3.55	3.5	0.005	0.82	1.0	0.05	14.95	0.01	1.731	5.85	0.00	0.2	99.8	0.0	-1.17	0.90	0.81	3.07	3.5	0.003	0.70	0.0	0.04	15.65	0.00	2.022	7.39	1.20	1.4	98.6	0.0	1.73	1.32	0.91	0.84	2.76	10139	1263	6	0	3	0	0	logfile
✔	7PLT	13501	2025-02-14	2021-09-01	3.3	3.94	3.24	3.4	0.014	1.15	1.0	0.07	14.64	0.01	1.727	4.16	0.00	0.2	99.8	0.0	-1.61	0.92	0.87	3.10	3.5	0.004	0.64	0.0	0.04	15.59	0.00	1.937	5.65	1.39	1.0	99.0	0.0	1.76	0.63	0.91	0.88	2.29	10148	1264	6	0	3	0	0	logfile
✔	8iHF	35443	2025-02-13	2023-02-22	2.97	3.26	3.05	3.3	0.003	0.53	0.0	0.04	17.37	0.00	2.218	6.05	0.11	3.8	96.2	0.0	-0.41	0.69	0.85	2.78	3.3	0.003	0.56	0.0	0.04	17.74	0.00	2.533	5.94	2.77	2.8	97.2	0.0	0.30	0.91	0.64	0.85	2.66	8691	1131	6	0	2	0	0	logfile
✔	7PM7	13523	2025-02-14	2021-09-02	3.5	3.92	3.46	3.4	0.004	0.85	1.0	0.05	15.67	0.01	1.732	5.26	0.09	0.2	99.8	0.0	-1.31	0.90	0.84	3.49	3.5	0.003	0.67	0.0	0.04	15.84	0.00	1.988	6.84	0.93	2.1	97.9	0.0	2.07	2.24	0.90	0.84	2.81	10149	1260	7	0	5	0	0	logfile
✔	6GX5	0077	2025-02-10	2018-06-26	3.2	2.51	2.94	3.2	0.017	1.20	0.0	0.11	16.09	0.01	2.596	5.96	4.94	4.3	95.7	0.0	-3.50	0.85	0.88	5.60	3.2	0.004	0.70	0.0	0.05	18.11	0.00	2.599	5.50	4.12	4.3	95.7	0.0	-2.85	0.55	0.82	0.86	5.37	2133	282	3	0	0	0	0	logfile
✔	8F2A	28810	2025-02-14	2022-11-07	2.2	2.40	2.32	2.5	0.004	0.60	0.0	0.05	13.83	0.00	2.188	4.68	0.76	1.7	98.3	0.0	-2.70	0.65	0.84	4.09	2.5	0.002	0.57	0.0	0.04	15.74	0.00	2.499	4.93	0.76	1.7	98.3	0.0	1.20	0.48	0.64	0.83	3.71	10044	1276	10	0	5	0	0	logfile
✔	7PMB	13527	2025-02-14	2021-09-02	3.6	4.10	3.61	3.6	0.006	0.93	1.0	0.06	15.86	0.01	1.732	6.47	0.09	0.2	99.8	0.0	-1.25	0.90	0.83	2.52	3.7	0.003	0.70	0.0	0.04	16.36	0.00	1.962	6.87	1.11	1.6	98.4	0.0	1.60	1.31	0.90	0.85	2.18	10113	1255	7	0	5	0	0	logfile
✔	6TGN	10499	2025-02-10	2019-11-17	3.9	3.83	—	4.0	0.010	1.73	0.0	0.12	11.93	0.01	2.161	5.17	1.39	4.7	95.3	0.0	-3.57	0.54	0.90	1.73	4.0	0.004	1.01	0.0	0.05	15.88	0.00	2.547	6.64	4.17	2.3	97.7	0.0	-0.12	1.13	0.53	0.82	0.52	672	88	1	0	0	0	0	logfile
✔	8HG7	34737	2025-02-11	2022-11-14	3.1	2.83	3.04	3.0	0.017	2.19	2.0	0.09	14.29	0.01	2.121	6.92	2.19	4.6	95.4	0.0	-2.67	0.56	0.81	4.34	3.0	0.003	0.62	0.0	0.04	15.37	0.00	2.198	7.34	1.99	2.0	98.0	0.0	1.79	1.18	0.64	0.83	3.63	4808	619	3	0	3	2	0	logfile
✔	8JV6	36669	2025-02-12	2023-06-27	3.43	3.73	3.38	3.7	0.005	0.75	0.0	0.05	15.51	0.00	2.184	7.00	0.00	2.7	97.3	0.0	0.26	0.62	0.83	2.25	3.7	0.003	0.57	0.0	0.04	15.40	0.00	2.596	4.78	3.01	2.9	97.1	0.0	0.75	0.33	0.62	0.83	2.25	7458	948	6	0	15	0	0	logfile
✔	8D13	27114	2025-02-13	2022-05-26	2.43	3.23	2.44	2.8	0.003	0.60	0.0	0.05	13.77	0.00	2.067	4.19	0.64	0.8	99.2	0.0	1.47	0.69	0.86	4.45	2.8	0.004	0.59	0.0	0.05	15.00	0.00	1.928	2.58	0.75	1.9	98.1	0.0	1.80	1.09	0.70	0.92	4.46	9216	1113	9	0	6	432	0	logfile
✔	8CYV	27085	2025-02-11	2022-05-24	3.5	3.17	3.47	3.7	0.003	0.61	0.0	0.05	10.01	0.00	2.423	5.36	0.00	5.9	94.1	0.0	-4.11	0.58	0.72	2.74	3.4	0.004	0.68	0.0	0.05	15.95	0.00	2.387	7.31	5.00	8.1	91.8	0.1	-3.99	1.31	0.59	0.75	2.76	5964	864	12	0	0	0	0	logfile
✔	7PM8	13524	2025-02-14	2021-09-02	3.5	3.91	3.50	3.4	0.004	0.88	1.0	0.05	15.71	0.01	1.732	6.40	0.09	0.3	99.7	0.0	-1.60	0.90	0.83	2.90	3.4	0.003	0.68	0.0	0.04	16.06	0.00	2.008	6.55	1.11	1.9	98.1	0.0	1.38	1.30	0.90	0.85	2.72	10149	1260	7	0	5	0	0	logfile
✔	8HB0	34610	2025-02-11	2022-10-27	2.9	2.62	2.75	2.7	0.015	2.22	4.0	0.09	13.36	0.00	2.153	6.66	0.80	3.9	95.9	0.2	-2.30	0.57	0.82	3.78	2.7	0.003	0.68	0.0	0.04	14.73	0.00	2.249	8.74	1.40	1.6	98.4	0.0	2.12	0.51	0.61	0.83	3.96	4778	615	3	0	3	4	0	logfile
✔	8iDE	35365	2025-02-13	2023-02-13	3.21	3.58	3.38	3.5	0.003	0.71	0.0	0.04	13.14	0.00	1.906	14.45	0.24	14.1	85.4	0.5	-1.37	0.75	0.77	2.17	3.5	0.003	0.74	0.0	0.04	15.46	0.00	2.242	13.31	4.09	12.9	86.7	0.4	-1.40	0.72	0.76	0.79	1.98	8393	1177	3	0	1	0	0	logfile
✔	6VH7	21200	2025-02-11	2020-01-09	3.8	3.84	—	4.1	0.007	1.03	0.0	0.05	15.14	0.01	2.318	28.35	2.13	12.4	87.6	0.0	-4.78	0.54	0.62	2.62	4.0	0.003	0.83	0.0	0.05	16.60	0.00	2.552	9.11	2.48	9.4	90.6	0.0	-4.35	3.66	0.59	0.68	1.41	4878	642	6	0	0	0	0	logfile

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