Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8DH7	27431	2025-02-12	2022-06-25	2.99	3.24	3.02	3.3	0.003	0.59	0.0	0.05	12.96	0.01	2.117	6.55	0.55	2.8	97.1	0.1	0.73	0.76	0.86	4.31	3.3	0.002	0.54	0.0	0.04	15.61	0.00	2.469	4.85	1.77	2.5	97.4	0.1	0.90	0.34	0.75	0.88	3.24	8274	1052	2	0	0	0	0	logfile
✔	7MGW	23830	2025-02-11	2021-04-13	3.5	3.79	—	4.0	0.003	0.64	0.0	0.04	13.53	0.00	2.292	9.19	1.40	2.9	97.1	0.0	-2.49	0.39	0.53	1.34	4.0	0.003	0.64	0.0	0.04	15.22	0.00	2.540	10.39	4.05	5.1	94.9	0.0	-0.95	1.02	0.59	0.76	1.69	6223	765	5	0	18	0	0	logfile
✔	8BCZ	15971	2025-02-12	2022-10-17	2.9	3.19	2.92	3.2	0.003	0.49	0.0	0.04	9.57	0.00	2.204	6.10	1.18	2.8	97.2	0.0	0.33	0.65	0.83	4.65	3.2	0.003	0.53	0.0	0.04	13.40	0.00	2.521	4.96	3.01	2.3	97.7	0.0	0.74	0.42	0.63	0.83	4.03	8505	1100	9	0	0	0	0	logfile
✔	7UiU	26553	2025-02-10	2022-03-29	2.8	3.11	2.72	3.1	0.004	0.62	0.0	0.04	13.60	0.00	2.356	3.35	0.00	4.8	95.2	0.0	-2.09	0.28	0.82	1.99	3.3	0.005	0.90	0.0	0.04	18.25	0.00	2.504	8.38	1.67	6.0	94.0	0.0	-2.70	1.37	0.28	0.89	2.33	607	85	1	0	0	0	0	logfile
✔	7P00	13140	2025-02-13	2021-06-29	2.71	2.90	—	3.0	0.012	1.68	8.0	0.11	12.35	0.01	2.236	4.97	0.81	3.4	96.6	0.0	-0.50	0.68	0.82	3.71	3.0	0.004	0.60	0.0	0.04	15.73	0.00	2.577	6.46	2.54	1.7	98.3	0.0	0.78	0.66	0.69	0.86	3.96	9110	1144	8	0	2	0	0	logfile
✔	8DRA	27675	2025-02-14	2022-07-20	3.98	4.17	3.98	4.0	0.003	0.77	0.0	0.05	15.74	0.01	2.257	11.58	0.35	5.4	94.6	0.0	-3.01	0.63	0.69	0.62	4.0	0.003	0.81	0.0	0.05	17.31	0.00	2.507	19.82	3.34	6.5	93.5	0.0	-2.92	2.05	0.67	0.76	0.68	9899	1218	3	0	0	0	0	logfile
✔	8EJD	28178	2025-02-14	2022-09-16	3.8	4.33	3.84	4.1	0.022	1.83	0.0	0.17	17.20	0.02	2.400	2.31	0.00	4.7	95.3	0.0	-0.17	0.83	0.78	2.34	4.1	0.005	1.08	1.0	0.05	14.14	0.00	2.154	13.96	2.28	8.0	91.9	0.1	-0.02	1.89	0.83	0.78	2.24	9804	1086	36	0	87	0	0	logfile
✔	7EY4	31377	2025-02-11	2021-05-29	3.69	3.90	—	3.9	0.007	0.90	0.0	0.05	16.81	0.01	2.150	10.63	0.20	13.5	86.1	0.4	-2.54	0.63	0.78	3.57	3.9	0.004	0.78	0.0	0.05	15.67	0.01	2.542	8.44	3.20	10.3	89.7	0.0	-1.68	1.28	0.65	0.81	3.07	4683	585	5	0	3	0	0	logfile
✔	7X1W	32951	2025-02-13	2022-02-24	3.3	3.45	—	3.4	0.007	0.76	0.0	0.04	15.42	0.00	2.163	7.80	0.00	6.5	93.5	0.0	-0.77	0.64	0.83	2.49	3.4	0.004	0.61	0.0	0.04	16.09	0.00	2.522	6.52	2.57	6.1	93.9	0.0	0.25	1.89	0.62	0.84	2.10	9315	1159	4	0	2	0	0	logfile
✔	8CVN	27010	2025-02-11	2022-05-18	2.4	3.23	2.42	3.1	0.018	1.47	3.0	0.18	18.48	0.00	2.524	1.49	1.21	2.4	97.6	0.0	0.60	0.84	0.87	3.98	3.1	0.003	0.49	0.0	0.04	17.98	0.00	2.603	3.72	1.93	1.4	98.6	0.0	1.83	0.82	0.76	0.87	2.93	4054	512	4	0	4	0	0	logfile
✔	7WCU	32429	2025-02-10	2021-12-20	3.09	3.27	—	3.2	0.009	1.15	0.0	0.06	13.76	0.01	2.289	6.61	0.29	7.8	92.2	0.0	-2.63	0.61	0.82	3.98	3.2	0.004	0.71	0.0	0.04	15.63	0.01	2.536	9.29	5.14	7.4	92.6	0.0	-2.19	0.48	0.61	0.83	3.14	3248	416	3	0	0	0	0	logfile
✔	6VTL	21381	2025-02-14	2020-02-12	3.65	4.17	—	4.0	0.004	0.80	0.0	0.05	13.73	0.01	2.026	5.90	0.00	3.4	96.6	0.0	-4.96	0.68	0.72	2.51	4.0	0.004	0.66	0.0	0.04	15.41	0.00	2.528	8.81	2.46	2.4	97.6	0.0	-1.26	0.52	0.71	0.77	1.93	10242	1338	6	0	6	0	0	logfile
✔	7ZLJ	14782	2025-02-14	2022-04-15	3.63	3.90	3.68	3.8	0.006	0.81	0.0	0.04	13.84	0.01	2.033	32.13	0.00	4.8	95.1	0.1	0.10	0.69	0.80	1.94	3.8	0.003	0.65	0.0	0.04	15.05	0.00	2.509	7.13	1.04	5.3	94.7	0.1	0.59	1.38	0.67	0.77	1.40	9659	1226	7	0	1	10	0	logfile
✔	7Q61	13849	2025-02-14	2021-11-05	2.88	3.70	2.93	3.4	0.006	1.09	0.0	0.06	14.48	0.01	2.275	3.96	0.10	4.5	95.2	0.2	-1.84	0.82	0.81	3.62	3.4	0.006	0.80	0.0	0.05	15.22	0.00	2.385	11.13	2.86	4.7	95.1	0.2	-0.41	0.48	0.82	0.83	2.90	9535	1210	4	0	7	0	0	logfile
✔	7N9Q	24259	2025-02-12	2021-06-18	4.6	4.92	—	2.3	0.002	0.88	0.0	0.00	5.65	0.00	2.600	0.00	0.00	8.9	90.3	0.8	-1.59	0.79	0.69	—	2.6	0.006	1.47	0.0	0.00	7.94	0.00	2.432	35.79	0.00	28.5	70.6	1.0	-4.70	2.66	0.86	0.82	—	6945	2315	1	0	0	0	0	logfile
✔	7WCK	32423	2025-02-10	2021-12-20	3.49	3.79	—	3.6	0.008	1.35	1.0	0.07	13.91	0.01	2.057	11.02	0.28	7.6	90.7	1.7	-3.09	0.67	0.79	2.16	3.6	0.004	0.83	0.0	0.05	14.81	0.01	2.525	11.96	2.25	6.9	92.6	0.5	-2.14	0.48	0.68	0.81	1.80	3245	416	3	0	0	0	0	logfile
✔	7LRS	23498	2025-02-11	2021-02-17	3.89	4.36	3.88	4.1	0.003	0.72	0.0	0.05	16.97	0.00	2.181	9.22	0.19	10.7	88.7	0.6	-2.85	0.87	0.79	2.13	4.1	0.004	0.79	0.0	0.05	15.37	0.01	2.366	10.36	2.23	10.0	89.1	0.8	-3.04	0.54	0.88	0.82	1.61	4912	625	5	0	8	0	0	logfile
✔	7WL2	32574	2025-02-14	2022-01-12	3.25	2.44	—	2.9	0.002	0.49	0.0	0.04	8.51	0.00	2.207	6.40	2.14	4.9	95.0	0.1	-4.09	0.76	0.76	3.15	2.2	0.004	0.67	0.0	0.04	14.64	0.00	2.468	9.29	4.01	5.7	94.3	0.1	0.11	1.21	0.80	0.81	2.22	10198	1330	2	0	0	0	0	logfile
✔	7EYA	31380	2025-02-11	2021-05-30	3.77	3.98	—	4.0	0.008	1.01	0.0	0.04	16.97	0.01	2.142	8.20	0.00	7.6	92.2	0.2	-2.30	0.60	0.77	2.21	4.0	0.003	0.69	0.0	0.04	15.68	0.01	2.502	6.10	2.79	7.8	92.1	0.2	-1.88	1.61	0.60	0.78	2.43	4629	576	5	0	3	0	0	logfile
✔	7V24	31636	2025-02-11	2021-08-07	3.29	3.50	—	3.4	0.006	0.80	0.0	0.05	13.64	0.00	2.164	12.03	0.24	11.3	88.7	0.0	-1.86	0.67	0.83	3.60	3.4	0.004	0.67	0.0	0.04	15.27	0.00	2.508	8.69	3.33	9.0	91.0	0.0	-0.94	0.38	0.66	0.84	3.41	3814	487	3	0	0	0	0	logfile

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