Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9CX3	45977	2025-02-11	2024-07-30	3.47	3.60	3.43	3.5	0.005	0.71	0.0	0.04	15.76	0.00	2.201	11.22	0.16	5.2	94.8	0.0	-1.54	0.72	0.67	1.75	3.5	0.004	0.72	0.0	0.04	17.09	0.00	2.497	13.02	5.91	6.5	93.5	0.0	-1.84	0.57	0.75	0.71	2.02	5626	720	6	0	0	0	0	logfile
✘	7STX	25438	2025-02-13	2021-11-15	3.14	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8611	1049	5	0	30	0	0	logfile
✔	7PiU	13453	2025-02-12	2021-08-23	2.58	2.73	—	2.7	0.013	1.71	0.0	0.09	14.84	0.00	2.250	3.33	0.97	4.1	95.8	0.1	-2.07	0.70	0.88	4.78	2.7	0.003	0.55	0.0	0.04	16.23	0.00	2.523	4.24	2.07	2.0	97.9	0.1	1.92	0.93	0.69	0.88	4.45	7788	974	14	0	3	88	0	logfile
✔	7DCE	30636	2025-02-12	2020-10-26	3.8	4.00	—	3.9	0.009	1.21	0.0	0.06	15.00	0.01	2.220	11.92	3.27	7.4	92.3	0.2	-3.04	0.70	0.81	1.88	3.9	0.006	0.84	0.0	0.04	16.94	0.00	2.481	12.13	4.18	4.8	95.2	0.0	1.59	1.43	0.69	0.81	2.19	7102	912	5	0	1	0	0	logfile
✔	7RKM	24500	2025-02-14	2021-07-22	3.5	3.62	—	3.5	0.005	0.97	0.0	0.06	12.32	0.00	2.181	7.47	0.00	3.7	96.3	0.0	-1.13	0.74	0.83	3.32	3.5	0.003	0.64	0.0	0.04	14.34	0.00	2.514	10.38	1.25	3.5	96.5	0.0	-0.32	0.40	0.74	0.83	2.48	9491	1201	7	0	1	0	0	logfile
✔	6P6i	20262	2025-02-13	2019-06-04	3.67	3.96	—	3.9	0.007	1.15	1.0	0.06	16.15	0.01	2.248	7.72	0.67	8.7	91.2	0.1	-5.14	0.60	0.73	1.36	3.9	0.004	0.85	0.0	0.05	17.70	0.00	2.418	13.74	3.33	8.1	91.9	0.0	-0.76	0.68	0.63	0.74	0.74	8726	1133	2	0	0	0	0	logfile
✔	7R0J	14223	2025-02-11	2022-02-02	4.23	4.64	4.43	4.4	0.008	1.03	0.0	0.05	13.44	0.01	2.029	37.19	0.20	8.8	91.2	0.0	-0.99	0.76	0.79	—	4.4	0.003	0.71	0.0	0.04	13.57	0.00	2.489	15.53	0.00	5.5	94.5	0.0	-0.56	0.61	0.75	0.79	—	4669	596	3	0	0	0	0	logfile
✔	6QNo	4598	2025-02-14	2019-02-11	4.38	4.65	—	4.4	0.010	1.25	0.0	0.07	11.76	0.01	2.227	12.05	1.65	11.6	88.4	0.0	-3.96	0.80	0.75	—	4.4	0.003	0.77	0.0	0.05	12.31	0.00	2.266	11.90	0.26	7.6	92.4	0.0	-1.42	0.78	0.79	0.74	—	10429	1332	8	0	3	0	0	logfile
✔	6LHT	0897	2025-02-14	2019-12-10	3.67	3.78	—	3.7	0.008	1.15	4.0	0.07	15.82	0.01	1.810	9.60	2.05	6.7	92.7	0.5	-4.42	0.44	0.82	2.88	3.7	0.004	0.78	0.0	0.05	16.72	0.01	2.448	7.95	3.32	9.0	90.8	0.2	-1.53	0.65	0.45	0.83	3.01	10754	1329	12	0	5	0	0	logfile
✔	7PD4	13330	2025-02-11	2021-08-04	4.9	4.13	—	7.8	0.005	0.87	0.0	0.05	14.59	0.00	2.035	38.59	0.00	11.7	88.3	0.0	-4.80	0.73	0.72	—	7.8	0.006	0.94	0.0	0.05	13.51	0.01	2.321	27.07	0.00	6.5	93.5	0.0	-1.67	1.27	0.74	0.74	—	6676	842	1	0	0	0	0	logfile
✔	7WH8	32497	2025-02-11	2021-12-30	3.11	3.31	—	3.2	0.004	0.71	1.0	0.05	14.34	0.01	2.233	11.28	2.61	8.6	91.0	0.4	-2.16	0.70	0.79	3.20	3.3	0.006	0.77	0.0	0.05	15.89	0.00	2.539	6.01	2.61	9.4	90.6	0.0	-1.44	1.19	0.70	0.82	3.66	5479	715	3	0	0	0	0	logfile
✔	7ZCU	14633	2025-02-14	2022-03-28	2.7	2.42	2.63	2.6	0.005	0.95	0.0	0.04	14.37	0.01	2.218	3.71	0.00	1.8	98.2	0.0	1.48	0.65	0.81	3.95	2.6	0.003	0.77	0.0	0.04	16.25	0.00	2.500	6.32	1.01	0.5	99.5	0.0	3.61	0.77	0.68	0.86	2.37	10149	958	47	0	42	9	0	logfile
✔	7V4B	31706	2025-02-10	2021-08-12	3.1	3.04	—	3.1	0.006	0.60	0.0	0.05	14.55	0.00	2.375	15.32	0.00	13.2	86.8	0.0	-5.99	0.41	0.69	2.66	3.2	0.003	0.57	0.0	0.05	17.29	0.00	2.619	7.88	7.14	7.9	92.1	0.0	-4.89	0.68	0.40	0.68	2.60	3336	480	6	0	0	0	0	logfile
✔	8DMF	27535	2025-02-11	2022-07-08	4.0	4.71	3.73	4.1	0.003	0.64	0.0	0.05	14.28	0.00	1.977	13.96	0.00	5.0	95.0	0.0	-0.20	0.81	0.83	—	4.1	0.004	0.75	0.0	0.04	15.89	0.00	1.822	14.05	0.82	5.6	94.4	0.0	-0.36	1.15	0.82	0.84	—	5670	718	2	0	2	0	0	logfile
✔	7ZHA	14728	2025-02-11	2022-04-05	3.55	3.96	3.62	4.0	0.005	0.73	0.0	0.04	14.09	0.01	2.352	15.98	0.50	4.8	95.2	0.0	1.39	0.58	0.72	1.74	4.0	0.003	0.72	0.0	0.04	16.27	0.00	2.551	11.86	3.97	4.6	95.0	0.4	1.58	0.84	0.57	0.73	1.67	3836	487	2	0	1	0	0	logfile
✔	8JGG	36233	2025-02-12	2023-05-20	3.0	3.29	3.17	3.2	0.006	0.94	0.0	0.05	14.77	0.00	2.288	9.81	1.05	5.8	94.2	0.0	-1.51	0.60	0.81	3.17	3.2	0.003	0.58	0.0	0.04	15.52	0.00	2.541	3.99	3.03	3.4	96.6	0.0	-0.11	0.37	0.63	0.83	2.85	7889	1076	6	0	0	0	0	logfile
✘	7NKD	12438	2025-02-14	2021-02-17	3.12	3.57	—	3.2	0.003	0.45	0.0	0.04	14.50	0.00	2.134	6.59	0.00	1.7	98.3	0.0	2.45	0.85	0.81	2.57	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9555	643	8	0	0	0	4768	logfile
✔	7NF6	12296	2025-02-13	2021-02-05	3.05	3.03	2.87	3.2	0.006	0.75	0.0	0.05	17.27	0.00	2.114	7.83	8.17	5.0	94.9	0.1	-4.80	0.69	0.85	3.59	3.2	0.004	0.68	0.0	0.04	16.66	0.00	2.345	6.29	3.39	4.3	95.6	0.1	-0.29	1.19	0.69	0.86	3.19	8817	1078	6	0	12	0	0	logfile
✔	7X91	33063	2025-02-11	2022-03-15	4.3	5.81	4.21	4.4	0.003	0.63	0.0	0.05	14.40	0.00	2.120	11.23	0.00	10.7	89.3	0.0	-2.69	0.81	0.73	—	4.5	0.003	0.63	0.0	0.04	13.24	0.00	2.412	9.56	0.00	12.4	87.6	0.0	-1.94	0.91	0.82	0.77	—	6559	427	4	0	2	0	3196	logfile
✔	7R88	24311	2025-02-14	2021-06-26	3.5	3.76	—	3.7	0.002	0.45	0.0	0.04	12.49	0.00	2.274	5.35	1.02	3.5	96.5	0.0	-1.50	0.69	0.85	2.38	3.7	0.005	0.64	0.0	0.04	15.02	0.00	2.408	5.16	2.54	5.3	94.7	0.0	1.25	1.33	0.71	0.89	2.99	10787	1368	4	0	0	0	0	logfile

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