Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7TPK	26058	2025-02-10	2022-01-25	3.4	3.41	—	3.4	0.011	1.40	1.0	0.08	9.83	0.01	2.528	2.12	0.00	4.7	95.3	0.0	-0.98	0.60	0.72	4.39	3.4	0.002	0.59	0.0	0.04	14.84	0.00	2.541	1.77	1.44	2.1	97.9	0.0	-1.11	1.23	0.64	0.80	2.86	1484	194	2	0	1	0	0	logfile
✔	7WS7	32749	2025-02-11	2022-01-28	3.4	3.83	—	3.7	0.005	0.71	0.0	0.05	14.98	0.00	1.820	9.34	0.00	5.1	94.9	0.0	-1.78	0.71	0.84	3.63	3.6	0.005	0.72	0.0	0.05	15.70	0.00	2.497	7.28	3.19	6.2	93.8	0.0	-1.21	1.26	0.70	0.88	3.12	5209	671	6	0	2	0	0	logfile
✔	7SoC	25266	2025-02-11	2021-10-29	3.3	3.48	3.25	3.5	0.011	1.22	0.0	0.07	13.13	0.00	2.526	0.89	0.00	1.9	98.1	0.0	0.30	0.70	0.86	4.49	3.5	0.004	0.58	0.0	0.04	12.88	0.00	2.609	2.97	2.20	2.1	97.9	0.0	-0.01	0.50	0.68	0.90	3.61	3448	433	5	0	7	0	0	logfile
✔	7SoF	25269	2025-02-11	2021-10-29	3.6	3.79	3.59	3.8	0.010	1.31	1.0	0.08	11.42	0.01	2.563	1.12	0.00	3.4	96.6	0.0	0.64	0.67	0.78	4.10	3.8	0.005	0.70	0.0	0.05	12.84	0.00	2.393	4.48	3.82	3.0	97.0	0.0	-0.32	1.38	0.69	0.83	3.72	3735	488	5	0	9	0	0	logfile
✔	7YMJ	33930	2025-02-10	2022-07-28	3.35	3.65	3.24	3.6	0.005	0.95	0.0	0.05	14.75	0.01	2.349	1.30	0.00	3.6	96.4	0.0	-3.45	0.64	0.83	2.70	3.6	0.003	0.59	0.0	0.04	15.14	0.00	2.585	2.12	2.80	3.8	96.2	0.0	0.72	0.38	0.63	0.84	1.81	3085	396	3	0	1	0	0	logfile
✘	7XCK	33123	2025-02-14	2022-03-24	2.5	2.98	2.85	3.0	0.004	0.71	0.0	0.05	12.63	0.01	2.179	4.89	0.00	4.6	95.3	0.1	-0.89	0.61	0.81	4.36	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	5488	704	4	0	3	0	0	logfile
✔	7WS6	32748	2025-02-11	2022-01-28	3.8	4.15	—	4.0	0.004	0.68	0.0	0.05	13.45	0.00	2.282	11.98	0.00	4.7	95.3	0.0	-1.37	0.67	0.73	2.81	4.0	0.007	1.39	1.0	0.05	16.35	0.00	2.372	14.86	2.58	4.0	96.0	0.0	-1.37	0.70	0.67	0.74	2.17	3531	451	3	0	0	0	0	logfile
✔	7P6A	13223	2025-02-11	2021-07-15	1.9	1.91	1.88	1.9	0.004	0.72	0.0	0.06	12.30	0.01	2.247	3.33	0.00	3.8	96.2	0.0	-3.07	0.51	0.86	7.13	1.9	0.004	0.67	0.0	0.05	14.23	0.00	2.613	4.40	0.43	4.7	95.3	0.0	-2.63	0.83	0.55	0.90	7.68	4166	540	10	0	0	76	0	logfile
✔	7TAS	25783	2025-02-10	2021-12-21	3.2	3.49	3.25	3.4	0.013	1.50	0.0	0.09	11.33	0.01	2.452	3.63	1.69	3.9	96.1	0.0	-1.01	0.68	0.83	4.31	3.4	0.003	0.66	0.0	0.04	13.36	0.00	2.553	3.80	2.03	3.2	96.8	0.0	-0.01	0.52	0.66	0.86	4.26	3147	417	4	0	3	0	0	logfile
✔	7YNS	33970	2025-02-10	2022-07-31	3.0	2.79	2.25	3.1	0.009	0.66	0.0	0.06	11.51	0.00	2.233	10.18	0.00	5.1	94.9	0.0	-3.28	0.51	0.87	6.08	3.1	0.002	0.51	0.0	0.05	13.93	0.00	2.653	3.65	1.94	2.3	97.7	0.0	-1.87	0.91	0.48	0.87	4.55	2526	366	6	0	0	0	0	logfile
✔	7WSA	32752	2025-02-11	2022-01-28	3.0	3.42	—	3.4	0.004	0.78	0.0	0.05	13.94	0.01	2.185	11.53	0.00	2.9	97.1	0.0	-1.59	0.76	0.71	2.04	3.4	0.003	0.78	0.0	0.04	15.54	0.00	2.505	11.14	1.14	2.8	97.2	0.0	0.58	0.69	0.78	0.76	1.78	6567	796	4	0	7	0	0	logfile
✔	8FEJ	29029	2025-02-14	2022-12-06	4.64	5.33	4.68	4.6	0.001	0.37	0.0	0.04	13.97	0.00	2.030	6.27	4.30	2.9	96.9	0.2	0.48	0.88	0.69	—	4.6	0.002	0.57	0.0	0.04	12.58	0.00	2.425	7.73	0.00	5.7	94.3	0.0	-0.57	1.32	0.91	0.76	—	10464	1368	3	0	0	0	0	logfile
✔	8ERQ	28558	2025-02-10	2022-10-12	3.3	3.48	3.22	3.5	0.010	1.32	0.0	0.07	10.04	0.01	2.265	2.12	0.95	3.8	96.2	0.0	0.38	0.63	0.76	4.07	3.5	0.003	0.65	0.0	0.04	14.03	0.00	2.610	3.10	3.48	3.4	96.6	0.0	-0.33	1.85	0.65	0.84	3.44	3178	423	4	0	1	0	0	logfile
✔	7WWK	32868	2025-02-11	2022-02-13	3.4	3.74	—	3.6	0.005	0.71	0.0	0.05	12.68	0.00	2.206	7.38	0.00	4.1	95.7	0.2	-0.93	0.74	0.87	3.33	3.5	0.004	0.65	0.0	0.05	15.02	0.00	2.511	5.99	2.90	4.6	95.4	0.0	-0.91	0.38	0.75	0.90	3.07	6620	845	6	0	0	0	0	logfile
✔	8HBH	34632	2025-02-13	2022-10-28	3.1	3.30	—	3.3	0.008	0.84	0.0	0.05	15.29	0.01	2.007	10.23	0.90	3.2	96.8	0.0	-0.10	0.68	0.78	2.79	3.3	0.003	0.58	0.0	0.04	15.73	0.00	1.129	6.98	3.25	2.5	97.5	0.0	0.98	0.31	0.72	0.82	2.59	8502	1099	4	0	5	0	0	logfile
✔	7XRP	33416	2025-02-11	2022-05-11	3.88	4.07	3.83	4.0	0.008	1.14	0.0	0.08	14.36	0.02	2.261	4.57	0.45	8.4	91.6	0.0	-4.63	0.53	0.80	2.30	4.0	0.003	0.70	0.0	0.04	16.05	0.00	2.586	9.76	3.61	5.6	94.4	0.0	-3.08	0.67	0.53	0.79	1.77	4129	515	5	0	4	0	0	logfile
✘	7WL8	32577	2025-02-14	2022-01-12	3.4	3.22	—	3.4	0.002	0.49	0.0	0.04	9.00	0.00	2.251	6.35	1.87	4.6	95.3	0.1	-3.89	0.83	0.80	2.71	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10198	1330	2	0	0	0	0	logfile
✘	7SoA	25264	2025-02-11	2021-10-29	3.1	3.33	3.14	3.3	0.011	1.27	0.0	0.08	10.15	0.01	2.194	1.06	0.24	2.0	98.0	0.0	0.99	0.68	0.84	4.69	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3850	477	5	0	6	0	0	logfile
✔	8HBN	34638	2025-02-11	2022-10-29	3.81	4.36	3.77	4.0	0.007	1.24	5.0	0.06	18.57	0.01	2.254	13.99	6.10	7.4	90.0	2.7	-1.66	0.66	0.81	1.11	4.0	0.003	0.78	0.0	0.04	18.04	0.00	2.501	7.11	3.92	6.2	93.4	0.4	-0.44	1.54	0.66	0.83	1.51	4189	536	2	0	0	0	0	logfile
✔	7WP5	32669	2025-02-11	2022-01-22	3.9	4.08	—	4.0	0.005	1.03	0.0	0.06	13.95	0.01	2.278	4.75	0.56	9.1	90.7	0.2	-4.27	0.59	0.74	2.00	4.0	0.003	0.72	0.0	0.04	15.98	0.00	2.495	8.89	5.04	9.5	90.2	0.2	-2.71	0.64	0.59	0.74	1.80	3340	425	4	0	2	0	0	logfile

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