Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7F2o	31429	2025-02-13	2021-06-11	2.9	2.20	—	2.1	0.003	0.57	0.0	0.04	12.79	0.01	2.194	5.71	0.41	3.2	96.8	0.0	-0.75	0.70	0.68	3.19	2.0	0.003	0.68	0.0	0.04	16.03	0.00	2.409	10.80	2.95	2.7	97.3	0.0	0.53	0.65	0.75	0.77	2.70	9004	1150	6	0	0	0	0	logfile
✔	7X9Y	33085	2025-02-13	2022-03-16	3.1	2.46	—	2.2	0.003	0.49	1.0	0.04	12.62	0.00	1.932	4.86	0.31	3.0	97.0	0.0	2.03	0.73	0.73	1.91	2.1	0.003	0.64	0.0	0.04	16.13	0.00	2.561	9.28	2.96	3.7	96.3	0.0	1.28	0.54	0.74	0.76	1.58	8982	1137	5	0	0	0	0	logfile
✔	7P1i	13161	2025-02-11	2021-07-01	3.15	4.49	3.18	4.4	0.002	0.57	0.0	0.04	11.18	0.00	2.265	8.39	5.90	4.3	95.7	0.0	3.38	0.55	0.71	0.60	4.4	0.004	1.08	0.0	0.05	15.35	0.00	2.456	20.49	4.07	6.6	93.4	0.0	0.36	0.97	0.57	0.73	0.45	6644	884	2	0	0	0	0	logfile
✔	7EZM	31389	2025-02-13	2021-06-01	2.9	2.20	—	2.0	0.011	1.07	1.0	0.07	13.16	0.01	2.228	4.78	0.94	3.8	96.2	0.0	-0.87	0.76	0.76	3.60	2.0	0.003	0.66	0.0	0.04	16.10	0.00	2.461	10.34	3.13	2.3	97.7	0.0	0.71	0.61	0.78	0.80	3.10	9008	1171	6	0	0	0	0	logfile
✔	6VX4	21429	2025-02-14	2020-02-21	3.12	3.57	3.17	3.4	0.002	0.43	0.0	0.04	12.96	0.00	2.173	11.38	0.38	8.1	91.9	0.0	-4.73	0.80	0.73	1.78	3.3	0.006	0.82	0.0	0.05	16.22	0.01	2.360	20.37	3.38	6.6	93.4	0.0	-1.49	1.46	0.84	0.83	2.51	9813	1265	9	0	0	0	0	logfile
✔	7SLP	25197	2025-02-11	2021-10-24	4.1	4.19	—	4.2	0.008	1.22	1.0	0.07	19.40	0.01	2.221	7.09	1.77	4.2	95.3	0.5	-3.76	0.62	0.56	—	4.1	0.003	0.69	0.0	0.04	17.92	0.01	2.501	10.63	0.00	4.0	96.0	0.0	0.11	1.42	0.71	0.71	—	5176	561	4	37	0	0	0	logfile
✔	6oFF	20044	2025-02-14	2019-03-29	3.2	3.32	—	3.3	0.009	0.83	0.0	0.04	10.88	0.01	2.147	4.73	0.00	3.9	96.1	0.0	-5.21	0.59	0.85	4.52	3.3	0.003	0.54	0.0	0.03	15.72	0.00	2.481	5.60	0.59	3.9	96.1	0.0	3.85	0.61	0.61	0.88	3.89	11016	1404	18	0	0	0	0	logfile
✔	6HU7	0273	2025-02-11	2018-10-05	2.8	2.82	2.83	2.9	0.008	0.78	0.0	0.05	9.81	0.01	2.130	10.26	0.36	2.7	96.8	0.5	-3.47	0.49	0.84	4.61	2.9	0.003	0.62	0.0	0.04	15.38	0.00	2.503	7.49	1.28	2.4	97.3	0.3	2.81	1.61	0.54	0.87	3.35	4890	609	7	0	0	0	0	logfile
✔	7EiB	31145	2025-02-12	2021-03-30	3.0	2.24	—	2.0	0.005	0.86	0.0	0.05	12.65	0.01	2.306	3.38	0.27	2.0	98.0	0.0	-0.34	0.74	0.75	3.17	2.0	0.004	0.66	0.0	0.04	15.59	0.00	2.474	7.88	2.69	1.6	98.4	0.0	1.12	1.20	0.75	0.78	1.89	7204	928	5	0	0	0	0	logfile
✔	7WUR	32839	2025-02-13	2022-02-09	3.5	4.22	—	3.7	0.003	0.68	0.0	0.04	14.34	0.00	2.211	11.28	0.31	7.6	92.4	0.0	-1.48	0.79	0.85	2.51	3.7	0.003	0.70	0.0	0.04	15.12	0.00	2.525	8.49	1.03	7.4	92.6	0.0	-1.02	0.39	0.79	0.84	2.54	8922	1134	6	0	0	0	0	logfile
✔	7V8M	31804	2025-02-13	2021-08-23	4.2	4.31	—	4.2	0.004	0.81	0.0	0.05	13.86	0.01	2.046	15.98	0.10	4.1	95.9	0.0	-0.28	0.67	0.72	—	4.2	0.003	0.75	0.0	0.05	14.09	0.00	2.466	11.76	0.00	4.2	95.8	0.0	0.27	0.63	0.68	0.78	—	9338	1263	4	0	0	0	0	logfile
✔	7KNT	22962	2025-02-11	2020-11-06	3.15	4.00	3.32	3.7	0.004	0.75	0.0	0.05	14.56	0.00	2.116	11.51	0.74	3.6	96.4	0.0	-0.48	0.58	0.75	1.64	3.7	0.003	0.70	0.0	0.04	16.20	0.00	2.521	10.16	3.21	3.4	96.6	0.0	0.42	0.96	0.57	0.76	0.54	3716	455	2	0	0	0	0	logfile
✔	8B0K	15786	2025-02-11	2022-09-07	3.0	3.23	3.08	3.2	0.002	0.52	0.0	0.04	9.63	0.00	2.276	7.40	0.50	3.1	96.9	0.0	0.56	0.57	0.83	5.07	3.2	0.002	0.58	0.0	0.04	13.09	0.00	2.587	5.97	3.02	3.7	96.3	0.0	0.96	0.27	0.59	0.85	4.34	3830	492	1	0	0	0	0	logfile
✔	7SAT	24956	2025-02-12	2021-09-23	3.9	3.85	3.80	3.8	0.004	0.76	0.0	0.04	14.44	0.00	2.080	15.57	0.28	7.4	92.6	0.0	0.06	0.61	0.77	1.82	3.8	0.004	0.87	0.0	0.04	17.20	0.00	2.386	14.67	3.10	5.9	94.1	0.0	0.43	0.59	0.62	0.77	1.43	6581	822	7	0	0	0	0	logfile
✔	6VXF	21436	2025-02-13	2020-02-21	3.5	3.42	—	3.4	0.009	1.04	0.0	0.06	15.36	0.01	2.025	4.68	1.25	7.7	92.1	0.2	-4.65	0.63	0.81	2.40	3.4	0.003	0.64	0.0	0.04	16.67	0.00	2.565	9.36	2.39	6.2	93.8	0.0	-0.35	1.25	0.63	0.80	1.89	8786	1130	2	0	0	0	0	logfile
✔	7KNU	22963	2025-02-11	2020-11-06	3.49	4.38	3.61	4.1	0.003	0.64	0.0	0.04	14.11	0.01	2.141	9.25	0.00	4.0	96.0	0.0	-1.59	0.59	0.76	1.17	4.1	0.003	0.76	0.0	0.04	16.17	0.00	2.495	10.97	1.45	4.4	95.6	0.0	-0.39	0.98	0.59	0.77	0.47	3809	467	3	0	0	0	0	logfile
✔	6YBV	10774	2025-02-12	2020-03-17	3.8	3.86	4.60	3.6	0.008	1.47	0.0	0.07	21.44	0.01	2.202	9.58	6.67	6.1	93.4	0.5	-2.26	0.34	0.56	1.26	3.6	0.006	1.02	0.0	0.05	21.95	0.01	1.990	21.37	3.73	11.9	87.8	0.3	-2.91	3.36	0.34	0.60	0.51	6731	769	5	78	0	0	0	logfile
✔	7EQ1	31254	2025-02-13	2021-04-28	3.3	2.26	—	2.0	0.003	0.58	0.0	0.04	13.83	0.00	2.113	10.24	0.00	6.5	93.5	0.0	-0.59	0.75	0.74	3.06	2.0	0.003	0.61	0.0	0.04	16.02	0.00	2.530	8.28	2.46	6.3	93.7	0.0	-0.17	0.33	0.75	0.77	2.56	8999	1150	5	0	0	0	0	logfile
✔	6LNi	0931	2025-02-11	2019-12-30	2.702	2.94	—	2.9	0.004	0.55	0.0	0.04	14.81	0.00	2.029	10.98	0.00	12.6	87.4	0.0	-6.05	0.48	0.82	5.95	2.9	0.003	0.62	0.0	0.05	19.58	0.00	2.625	10.13	1.93	10.2	89.8	0.0	-3.69	1.14	0.53	0.87	4.75	4920	600	10	0	0	0	0	logfile
✔	7VR1	32096	2025-02-13	2021-10-21	3.4	3.67	—	3.6	0.003	0.55	0.0	0.04	13.99	0.00	2.253	7.05	0.00	5.8	94.2	0.0	-0.76	0.68	0.84	1.98	3.6	0.002	0.60	0.0	0.04	15.57	0.00	2.540	5.06	1.19	5.3	94.7	0.0	0.80	0.35	0.68	0.85	1.39	9522	1196	2	0	0	0	0	logfile

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