Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7Q2Z	13786	2025-02-12	2021-10-26	3.2	2.91	3.15	3.2	0.002	0.48	0.0	0.03	18.98	0.00	2.227	4.26	0.00	6.5	93.4	0.1	-1.44	0.67	0.80	2.05	3.2	0.003	0.55	0.0	0.03	19.95	0.00	2.375	2.84	1.09	2.5	97.4	0.1	2.17	1.21	0.70	0.86	2.00	8258	902	4	46	0	0	0	logfile
✔	7QL1	14060	2025-02-10	2021-12-19	3.34	3.41	3.13	3.4	0.011	2.01	0.0	0.10	11.06	0.01	2.654	0.29	0.00	7.5	92.5	0.0	-3.09	0.42	0.83	4.57	3.4	0.006	0.77	0.0	0.05	15.79	0.00	2.533	7.63	3.65	5.6	94.4	0.0	-2.54	1.62	0.37	0.81	4.69	1671	219	3	0	0	0	0	logfile
✔	7BTW	30189	2025-02-14	2020-04-03	2.9	3.04	—	3.1	0.008	1.12	3.0	0.06	18.11	0.01	1.556	6.99	9.60	8.0	91.6	0.4	-5.22	0.65	0.76	3.14	3.1	0.006	0.80	0.0	0.05	18.10	0.01	2.152	8.84	3.58	8.3	91.6	0.2	-1.77	0.72	0.65	0.80	2.86	10246	1280	4	0	0	0	0	logfile
✔	7UDC	26456	2025-02-14	2022-03-18	3.7	3.83	3.54	3.8	0.003	0.54	0.0	0.04	14.90	0.00	2.200	7.86	0.28	3.3	96.7	0.0	1.79	0.71	0.80	1.93	3.8	0.003	0.57	0.0	0.04	16.90	0.00	2.420	6.61	2.36	2.8	97.2	0.0	1.91	0.38	0.74	0.82	1.57	6425	806	3	0	0	0	0	logfile
✔	7WUS	32840	2025-02-11	2022-02-09	3.4	3.78	—	3.8	0.003	0.75	0.0	0.05	17.11	0.00	2.030	11.90	1.00	8.6	91.4	0.0	-2.40	0.69	0.74	1.76	3.8	0.003	0.78	0.0	0.05	17.75	0.00	2.493	10.12	3.01	7.5	92.5	0.0	-1.83	1.46	0.69	0.77	1.49	5450	682	2	0	0	0	0	logfile
✔	7ADM	11731	2025-02-14	2020-09-15	3.5	3.77	3.57	3.8	0.013	1.98	3.0	0.11	15.37	0.02	2.582	0.00	0.73	11.9	88.1	0.0	-2.91	0.49	0.70	2.46	3.8	0.003	0.62	0.0	0.04	16.99	0.00	2.288	6.27	1.83	8.3	91.7	0.0	-1.50	1.84	0.49	0.69	2.34	9726	614	1	0	0	0	4799	logfile
✔	7ASA	11891	2025-02-12	2020-10-27	3.5	3.33	—	3.2	0.013	1.98	6.0	0.10	20.13	0.02	2.490	0.68	0.18	3.5	95.8	0.7	-2.30	0.75	0.75	1.26	3.2	0.005	0.80	0.0	0.04	21.31	0.01	2.372	13.35	5.31	4.5	95.4	0.1	-0.58	1.44	0.76	0.77	0.68	8104	750	5	116	0	0	0	logfile
✔	8Y6J	38988	2025-02-11	2024-02-02	3.46	3.69	3.47	3.7	0.003	0.55	0.0	0.04	16.14	0.00	2.181	6.75	0.00	3.3	96.7	0.0	3.00	0.58	0.79	1.79	3.7	0.003	0.52	0.0	0.04	16.71	0.00	2.567	6.38	3.07	4.3	95.7	0.0	3.49	0.23	0.57	0.79	1.51	6650	850	2	0	0	0	0	logfile
✔	7UDB	26455	2025-02-14	2022-03-18	3.5	3.64	3.39	3.6	0.003	0.50	0.0	0.04	15.55	0.00	2.182	6.46	0.14	2.8	97.2	0.0	1.74	0.77	0.82	1.51	3.6	0.004	0.60	0.0	0.04	16.79	0.00	2.546	6.39	1.10	3.0	97.0	0.0	1.88	1.14	0.76	0.83	1.64	6472	807	3	0	0	0	0	logfile
✔	7NKQ	12446	2025-02-14	2021-02-18	2.98	3.25	—	3.1	0.004	0.49	0.0	0.04	13.52	0.00	2.018	7.16	0.00	2.7	97.3	0.0	1.39	0.81	0.81	2.98	3.1	0.002	0.51	0.0	0.04	15.83	0.00	2.363	4.80	0.52	2.1	97.9	0.0	1.94	0.32	0.82	0.84	2.49	10621	714	8	0	0	0	5312	logfile
✔	6VK0	21222	2025-02-13	2020-01-18	4.1	4.29	—	4.2	0.007	0.84	1.0	0.05	14.84	0.01	2.198	17.61	0.19	6.7	93.3	0.0	-3.49	0.60	0.78	—	4.2	0.003	0.71	0.0	0.04	14.79	0.00	2.496	9.72	0.00	4.6	95.4	0.0	0.53	0.80	0.59	0.76	—	9559	1160	4	0	0	0	0	logfile
✔	6VJZ	21221	2025-02-13	2020-01-18	4.3	4.41	—	4.3	0.006	0.83	0.0	0.05	14.50	0.00	2.195	21.73	0.10	6.2	93.8	0.1	-3.21	0.64	0.79	—	4.3	0.004	0.73	0.0	0.04	14.70	0.00	2.482	12.50	0.00	5.5	94.5	0.0	0.92	1.64	0.62	0.79	—	8996	1093	4	0	0	0	0	logfile
✔	6VK1	21223	2025-02-12	2020-01-18	3.9	3.99	—	3.9	0.003	0.59	0.0	0.04	14.77	0.00	2.245	10.65	0.13	4.4	95.6	0.0	-1.86	0.62	0.79	1.42	3.9	0.003	0.77	0.0	0.04	17.30	0.00	2.345	9.34	2.41	4.0	96.0	0.0	1.79	1.54	0.61	0.79	1.13	7259	882	2	0	0	0	0	logfile
✔	7WED	32447	2025-02-11	2021-12-23	3.5	3.62	—	3.7	0.003	0.70	0.0	0.05	13.75	0.01	2.285	7.13	0.00	8.2	91.8	0.0	-1.64	0.57	0.77	2.25	3.6	0.003	0.68	0.0	0.04	16.67	0.01	2.550	6.38	3.81	6.8	93.2	0.0	-1.15	1.14	0.57	0.78	2.15	3358	431	3	0	0	0	0	logfile
✔	7YiM	33861	2025-02-11	2022-07-17	2.6	2.93	2.77	2.9	0.013	1.14	0.0	0.07	15.89	0.01	2.272	6.72	0.78	4.9	95.1	0.0	-4.17	0.67	0.68	1.25	2.9	0.005	0.70	0.0	0.04	17.83	0.00	2.426	10.84	1.55	3.4	96.6	0.0	0.32	1.23	0.65	0.68	1.21	4657	592	1	0	0	0	0	logfile
✔	6ND1	0440	2025-02-13	2018-12-13	4.1	4.15	—	4.1	0.009	1.23	14.0	0.08	16.24	0.01	2.249	7.63	0.10	3.7	96.2	0.2	-3.89	0.60	0.82	—	4.1	0.005	0.76	0.0	0.05	14.80	0.00	2.370	7.68	0.00	4.4	95.6	0.0	0.04	0.63	0.59	0.81	—	9186	1179	6	0	0	0	0	logfile
✔	7PDH	13338	2025-02-11	2021-08-05	4.0	3.51	—	3.2	0.003	0.70	0.0	0.04	14.16	0.00	2.169	14.32	0.00	5.8	94.2	0.0	-1.07	0.79	0.69	—	3.2	0.003	0.70	0.0	0.04	16.38	0.00	2.452	13.76	2.50	6.7	93.3	0.0	-0.59	0.52	0.79	0.71	—	4516	577	2	0	0	0	0	logfile
✔	7QiA	13985	2025-02-11	2021-12-14	3.5	3.73	3.29	3.6	0.003	0.60	0.0	0.04	12.91	0.00	2.259	11.63	0.00	7.9	92.1	0.0	-1.03	0.65	0.80	1.56	3.7	0.003	0.59	0.0	0.04	14.61	0.00	2.581	10.92	1.59	7.1	92.9	0.0	-0.29	1.33	0.62	0.79	1.16	4843	639	4	0	0	3	0	logfile
✔	7R87	24310	2025-02-14	2021-06-26	3.4	3.29	2.98	3.3	0.002	0.44	0.0	0.04	12.08	0.00	2.317	5.75	0.51	3.2	96.8	0.0	-1.48	0.61	0.80	2.20	3.3	0.003	0.61	0.0	0.04	14.46	0.00	2.505	4.83	2.03	4.6	95.4	0.0	1.36	0.66	0.71	0.91	3.31	10793	1369	4	0	0	0	0	logfile
✘	6X0U	21984	2025-02-10	2020-05-17	3.6	3.62	—	3.6	0.004	0.62	0.0	0.04	14.50	0.00	2.277	5.74	0.00	3.7	96.1	0.3	-5.79	0.26	0.78	1.89	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3091	398	4	0	0	0	0	logfile

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