Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6NBH	0411	2025-02-14	2018-12-07	3.5	4.06	—	4.0	0.005	0.86	0.0	0.05	8.43	0.00	2.357	1.79	0.20	2.6	97.4	0.0	-1.51	0.62	0.76	1.73	4.0	0.003	0.72	0.0	0.04	15.15	0.00	2.383	8.77	3.04	3.3	96.7	0.0	0.83	1.05	0.59	0.76	1.59	9502	1159	7	0	10	0	0	logfile
✔	7ARH	11882	2025-02-14	2020-10-25	3.3	3.57	—	3.5	0.003	0.72	0.0	0.05	12.33	0.00	2.324	2.92	0.20	3.5	96.5	0.0	-5.69	0.70	0.75	0.94	3.5	0.003	0.76	0.0	0.04	16.21	0.00	2.492	10.13	2.94	4.4	95.6	0.0	-1.17	1.36	0.73	0.82	1.30	9649	1261	7	0	2	0	0	logfile
✔	7YPQ	34011	2025-02-10	2022-08-04	3.1	3.22	2.15	3.2	0.005	0.63	0.0	0.05	17.79	0.00	2.261	7.93	0.00	2.2	97.8	0.0	-0.66	0.52	0.79	2.67	3.2	0.005	0.57	0.0	0.04	19.33	0.00	2.538	7.05	2.26	2.5	97.5	0.0	0.12	0.31	0.52	0.80	2.34	2915	327	2	11	0	0	0	logfile
✔	7Yi9	33854	2025-02-11	2022-07-15	2.6	2.91	2.69	2.9	0.004	0.65	0.0	0.40	14.61	0.00	2.115	9.72	0.00	5.0	95.0	0.0	-0.81	0.63	0.75	3.34	2.9	0.004	0.62	0.0	0.04	17.72	0.00	2.153	8.01	2.77	4.5	95.5	0.0	-0.48	1.96	0.64	0.78	3.11	5226	634	5	0	1	0	0	logfile
✔	7Y27	33587	2025-02-12	2022-06-09	3.48	3.96	3.59	3.9	0.012	0.63	0.0	0.06	13.37	0.00	2.204	5.95	0.00	3.7	96.2	0.1	0.16	0.67	0.81	2.45	4.0	0.002	0.57	0.0	0.04	15.02	0.00	2.413	3.64	1.68	3.2	96.8	0.0	0.69	0.95	0.67	0.82	1.78	8184	1137	7	0	1	0	0	logfile
✔	6XSS	22305	2025-02-12	2020-07-16	3.7	3.37	—	3.3	0.003	0.63	0.0	0.04	12.31	0.00	1.843	28.34	0.00	2.5	97.5	0.0	-0.32	0.74	0.78	0.04	3.3	0.006	0.83	0.0	0.04	16.92	0.01	2.513	20.49	3.28	2.4	97.6	0.0	2.00	1.27	0.75	0.80	0.36	8048	1040	4	0	0	0	0	logfile
✔	6XoV	22281	2025-02-12	2020-07-07	3.3	3.79	3.30	3.4	0.005	0.76	1.0	0.05	14.28	0.01	2.100	13.73	0.35	5.0	95.0	0.0	-1.92	0.85	0.80	2.36	3.5	0.003	0.65	0.0	0.04	15.29	0.00	2.492	9.11	0.93	3.1	96.9	0.0	0.77	0.97	0.84	0.81	1.84	7755	969	3	0	3	0	0	logfile
✔	7VGF	31967	2025-02-12	2021-09-16	3.3	3.62	—	3.5	0.004	0.70	0.0	0.04	14.50	0.00	2.083	9.67	0.24	3.3	96.7	0.0	2.62	0.63	0.74	1.47	3.5	0.003	0.54	0.0	0.04	15.69	0.00	2.024	5.84	3.70	2.8	97.2	0.0	2.87	0.50	0.70	0.80	1.49	8280	1100	4	0	4	0	0	logfile
✔	7QBC	13886	2025-02-11	2021-11-18	3.53	3.78	3.55	3.8	0.008	0.97	0.0	0.05	13.18	0.01	2.055	3.75	0.43	4.9	95.1	0.0	-2.40	0.56	0.74	2.58	3.8	0.005	1.12	1.0	0.04	14.46	0.01	2.394	11.34	1.49	4.6	95.4	0.0	1.31	0.51	0.60	0.78	1.53	5054	622	6	0	16	0	0	logfile
✔	7Zo8	14843	2025-02-13	2022-04-24	3.6	3.59	3.40	3.6	0.004	0.70	0.0	0.04	16.85	0.00	2.257	8.47	0.42	4.8	94.9	0.4	1.72	0.66	0.80	1.67	3.6	0.003	0.59	0.0	0.04	16.79	0.00	2.503	6.75	1.06	4.2	95.4	0.4	1.96	0.33	0.66	0.77	1.50	8952	1140	4	0	2	0	0	logfile
✔	7ARJ	11884	2025-02-14	2020-10-25	3.2	3.48	—	3.4	0.005	0.80	0.0	0.05	13.52	0.01	2.312	3.21	0.10	5.0	95.0	0.0	-5.75	0.66	0.74	1.55	3.4	0.003	0.67	0.0	0.04	16.11	0.00	2.036	6.36	2.32	3.6	96.4	0.0	-0.84	1.30	0.70	0.83	1.71	9601	1262	8	0	6	0	0	logfile
✔	7To0	26025	2025-02-11	2022-01-22	3.5	3.68	—	3.7	0.011	1.17	0.0	0.07	16.44	0.00	2.288	8.07	0.82	7.5	92.5	0.0	-3.00	0.72	0.81	2.21	3.7	0.003	0.58	0.0	0.04	17.76	0.00	2.550	8.07	3.29	8.5	91.5	0.0	-0.41	0.55	0.74	0.82	2.30	5989	682	4	24	1	0	0	logfile
✔	7SUN	25442	2025-02-14	2021-11-17	3.6	3.21	—	3.4	0.003	0.69	0.0	0.05	13.91	0.00	2.279	7.34	0.00	3.6	96.4	0.0	0.67	0.63	0.78	2.16	3.4	0.003	0.60	0.0	0.04	16.16	0.00	2.532	10.87	1.91	4.6	95.4	0.0	1.56	1.14	0.64	0.80	1.88	10454	1350	2	0	0	0	0	logfile
✔	6oS9	20180	2025-02-14	2019-05-01	3.0	3.41	—	3.4	0.010	1.08	0.0	0.06	10.14	0.01	2.240	5.39	0.21	4.9	95.1	0.0	-2.70	0.67	0.82	3.39	3.4	0.004	0.73	0.0	0.04	15.38	0.00	2.419	9.47	2.89	3.0	97.0	0.0	0.60	0.72	0.65	0.82	2.47	8969	1152	6	0	0	0	0	logfile
✔	7QBi	13887	2025-02-11	2021-11-19	3.46	3.72	3.49	3.7	0.008	1.06	0.0	0.05	14.75	0.01	2.231	3.40	0.00	2.8	97.2	0.0	-1.45	0.59	0.76	2.29	3.7	0.003	0.65	0.0	0.04	13.99	0.00	2.586	9.59	2.40	1.5	98.5	0.0	3.29	1.64	0.59	0.81	2.15	4996	622	8	0	16	0	0	logfile
✔	7UY8	26867	2025-02-14	2022-05-06	4.5	8.56	4.38	4.2	0.003	0.63	1.0	0.05	14.55	0.00	2.207	8.69	0.00	6.1	93.9	0.0	-0.66	0.79	0.60	—	4.4	0.002	0.66	0.0	0.04	14.53	0.00	2.439	10.83	0.00	4.9	95.1	0.0	-0.10	1.37	0.92	0.84	—	9552	1161	5	0	1	0	0	logfile
✔	7Zo9	14844	2025-02-13	2022-04-24	3.5	3.84	3.61	3.9	0.003	0.63	0.0	0.04	15.33	0.00	2.164	10.83	0.00	7.1	92.7	0.2	0.40	0.68	0.79	1.52	3.9	0.003	0.69	0.0	0.04	16.47	0.00	2.456	8.55	1.08	5.3	94.5	0.2	1.21	0.42	0.67	0.79	1.55	8730	1112	4	0	4	0	0	logfile
✔	7S8o	24899	2025-02-12	2021-09-18	2.58	2.12	2.59	1.9	0.007	0.72	0.0	0.05	13.52	0.00	2.102	3.18	0.00	5.8	94.2	0.0	0.31	0.81	0.80	4.50	1.9	0.003	0.59	0.0	0.04	15.82	0.00	2.541	2.63	2.19	4.7	95.3	0.0	1.16	0.39	0.83	0.84	3.16	8331	1101	6	0	1	0	0	logfile
✔	6M4H	30078	2025-02-13	2020-03-07	3.9	4.39	—	3.9	0.008	0.89	0.0	0.05	29.22	0.01	1.729	27.61	2.85	3.1	96.7	0.2	-6.02	0.82	0.76	1.36	3.9	0.004	0.73	0.0	0.04	29.69	0.00	2.074	14.30	2.14	2.7	97.3	0.0	1.43	1.40	0.87	0.84	0.92	9420	656	10	206	0	0	0	logfile
✔	7FJM	31623	2025-02-12	2021-08-04	3.3	3.57	—	3.5	0.014	1.57	16.0	0.12	11.98	0.01	2.194	5.81	3.44	9.2	90.3	0.5	-4.28	0.65	0.76	2.17	3.5	0.003	0.72	0.0	0.04	14.23	0.01	2.465	6.24	3.85	7.3	92.4	0.3	-1.23	1.69	0.66	0.82	1.26	7086	973	1	0	0	0	0	logfile

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