Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	3JBS	6478	2025-02-10	2015-10-13	2.9	3.04	—	3.2	0.010	1.32	0.0	0.06	8.67	0.01	2.510	0.00	0.00	2.9	97.1	0.0	0.51	0.21	0.76	4.15	3.0	0.003	0.63	0.0	0.04	17.99	0.00	2.650	5.51	3.95	1.2	98.8	0.0	0.90	1.79	0.21	0.82	3.78	1401	175	1	0	0	0	0	logfile
✔	7SLA	25196	2025-02-11	2021-10-23	3.15	3.74	—	3.7	0.009	1.01	2.0	0.07	13.72	0.01	2.210	3.63	1.74	6.8	93.2	0.0	-4.25	0.59	0.79	1.94	3.6	0.003	0.61	0.0	0.04	15.01	0.00	2.503	2.45	1.74	4.3	95.7	0.0	0.23	0.67	0.53	0.79	1.97	5458	702	3	0	1	0	0	logfile
✔	7QTJ	14142	2025-02-14	2022-01-14	4.01	4.23	—	4.1	0.004	0.73	4.0	0.05	15.20	0.01	2.144	8.44	1.27	5.2	94.5	0.3	0.17	0.63	0.74	—	4.1	0.002	0.64	0.0	0.04	13.26	0.00	2.421	7.11	0.00	4.6	95.2	0.2	-0.35	0.46	0.63	0.74	—	9942	1280	8	0	5	0	0	logfile
✔	6M71	30127	2025-02-13	2020-03-16	2.9	3.35	3.10	3.3	0.003	0.59	0.0	0.04	13.42	0.00	1.966	8.99	0.00	4.2	95.8	0.0	-3.06	0.74	0.80	3.55	3.3	0.003	0.62	0.0	0.04	15.64	0.00	2.389	7.94	2.12	3.3	96.7	0.0	0.15	1.71	0.75	0.81	3.35	8614	1085	4	0	0	0	0	logfile
✔	7V84	31789	2025-02-11	2021-08-22	3.0	3.81	—	3.5	0.003	0.54	0.0	0.04	16.31	0.00	2.199	5.95	0.00	4.3	95.7	0.0	-0.37	0.82	0.87	2.88	3.5	0.003	0.61	0.0	0.04	15.61	0.00	2.454	3.94	0.57	4.8	95.2	0.0	0.01	0.34	0.78	0.84	3.10	6636	797	9	0	13	0	0	logfile
✔	7XUR	33477	2025-02-12	2022-05-19	3.49	3.71	3.49	3.6	0.005	0.72	0.0	0.04	19.36	0.00	2.207	10.26	0.00	8.8	91.2	0.0	-2.26	0.77	0.78	2.19	3.6	0.003	0.60	0.0	0.04	20.30	0.00	2.415	6.84	0.69	5.4	94.5	0.1	-1.13	0.34	0.77	0.78	2.07	7749	814	6	48	2	0	0	logfile
✔	6BX3	7303	2025-02-14	2017-12-16	4.3	4.71	—	4.4	0.007	1.49	0.0	0.08	12.65	0.01	1.094	24.88	0.97	18.8	81.2	0.1	-5.00	0.74	0.72	—	4.4	0.003	0.84	0.0	0.05	13.09	0.00	2.420	16.14	0.00	14.2	85.7	0.1	-3.34	1.36	0.74	0.71	—	10456	1413	7	0	0	0	0	logfile
✔	6CP7	7549	2025-02-13	2018-03-13	4.1	4.11	—	4.1	0.008	1.42	0.0	0.07	13.16	0.01	1.577	14.52	3.98	6.6	92.9	0.5	-4.99	0.50	0.68	—	4.1	0.005	0.98	0.0	0.05	12.69	0.00	2.472	18.04	0.11	4.6	95.4	0.0	-0.58	0.99	0.51	0.71	—	9164	1234	16	0	0	0	0	logfile
✔	7Y1B	33559	2025-02-11	2022-06-08	3.23	3.55	3.34	3.5	0.006	0.64	0.0	0.05	14.26	0.01	2.340	4.92	0.00	9.8	90.2	0.0	-1.42	0.74	0.84	3.37	3.4	0.003	0.59	0.0	0.04	15.68	0.01	2.546	3.69	0.63	5.1	94.9	0.0	0.02	0.90	0.73	0.86	2.95	4137	541	3	0	0	0	0	logfile
✘	7YGC	33815	2025-02-13	2022-07-11	2.65	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8690	0	4	407	6	0	0	logfile
✔	7V87	31792	2025-02-11	2021-08-22	3.3	3.93	—	3.6	0.003	0.65	0.0	0.05	16.49	0.00	2.167	6.58	0.00	5.4	94.6	0.0	-0.21	0.79	0.84	2.44	3.6	0.004	0.61	0.0	0.04	15.87	0.00	2.518	4.41	1.57	5.9	94.1	0.0	0.01	0.35	0.79	0.87	2.34	6617	797	6	0	12	0	0	logfile
✘	6RJU	4906	2025-02-10	2019-04-29	3.2	4.49	2.14	10.0	0.007	0.94	0.0	0.05	15.36	0.00	2.423	4.52	0.00	11.6	88.4	0.0	-7.10	0.22	-0.01	-0.80	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	1992	131	1	0	0	0	997	logfile
✔	5UAR	8461	2025-02-14	2016-12-19	3.73	4.36	—	4.4	0.008	1.18	0.0	0.06	13.30	0.00	2.393	0.26	1.06	7.4	92.5	0.1	-3.58	0.58	0.77	1.39	4.3	0.003	0.71	0.0	0.04	16.27	0.00	2.542	8.25	3.00	3.9	96.1	0.0	0.10	1.50	0.61	0.79	1.05	9489	1184	2	0	2	0	0	logfile
✔	6VJA	21212	2025-02-14	2020-01-15	3.3	3.74	3.48	3.6	0.014	1.27	0.0	0.08	12.61	0.01	2.193	4.71	0.49	4.2	95.7	0.1	0.64	0.61	0.80	2.94	3.7	0.003	0.69	0.0	0.04	14.94	0.00	2.519	5.83	2.83	3.4	96.6	0.0	1.65	1.24	0.60	0.79	2.57	9342	1204	8	0	6	0	0	logfile
✔	7V8B	31796	2025-02-11	2021-08-22	3.2	3.85	—	3.6	0.003	0.59	0.0	0.04	15.61	0.00	2.308	6.16	0.00	5.0	94.8	0.1	-0.34	0.79	0.85	2.31	3.6	0.003	0.58	0.0	0.04	15.59	0.00	2.427	4.24	1.00	5.0	94.8	0.1	0.35	1.16	0.79	0.88	2.30	6650	797	9	0	14	0	0	logfile
✔	7YG8	33811	2025-02-12	2022-07-11	2.97	3.59	3.04	3.0	0.002	0.48	0.0	0.03	24.52	0.00	2.042	13.48	0.00	0.0	0.0	0.0	—	0.89	0.82	—	3.0	0.008	0.71	0.0	0.04	24.57	0.00	1.803	17.58	0.00	0.0	0.0	0.0	—	0.39	0.91	0.90	—	8440	0	4	395	5	0	0	logfile
✘	7YGB	33814	2025-02-13	2022-07-11	2.62	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8738	0	5	407	54	0	0	logfile
✔	8CGG	16642	2025-02-10	2023-02-04	2.5	2.67	2.48	2.7	0.011	1.67	0.0	0.08	16.62	0.01	2.637	6.41	0.00	11.5	88.5	0.0	-5.62	0.55	0.94	8.29	2.7	0.004	0.85	0.0	0.04	17.07	0.00	2.634	0.78	0.00	5.1	94.9	0.0	-4.93	0.95	0.51	0.92	7.73	2710	400	5	0	0	0	0	logfile
✔	6YUZ	10936	2025-02-14	2020-04-27	2.8	2.85	2.72	2.9	0.006	0.58	1.0	0.05	15.65	0.00	2.235	6.04	2.33	3.8	95.9	0.3	-3.67	0.66	0.85	3.38	2.9	0.003	0.60	0.0	0.04	14.67	0.00	2.450	5.16	1.86	5.4	94.6	0.0	-0.84	1.06	0.67	0.91	3.87	9782	1188	4	0	10	0	0	logfile
✔	7F63	31471	2025-02-11	2021-06-24	3.9	4.20	—	4.0	0.002	0.58	0.0	0.04	13.34	0.00	2.136	12.60	0.00	8.3	91.4	0.2	-2.31	0.63	0.62	1.27	4.0	0.004	0.88	0.0	0.05	16.34	0.00	2.529	14.42	1.89	12.6	86.9	0.5	-3.08	1.50	0.65	0.70	1.48	3375	429	3	0	0	0	0	logfile

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