Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8SCX	40346	2025-02-11	2023-04-05	2.7	3.26	2.76	3.1	0.006	0.70	0.0	0.04	14.97	0.00	2.240	5.56	0.18	1.9	98.1	0.0	1.27	0.69	0.85	4.05	3.1	0.004	0.55	0.0	0.04	16.69	0.00	2.399	5.56	2.33	2.3	97.7	0.0	2.44	0.41	0.64	0.83	3.35	5753	760	7	0	2	0	0	logfile
✔	8CV2	27006	2025-02-14	2022-05-17	2.44	2.61	2.44	2.8	0.003	0.53	0.0	0.04	14.13	0.00	2.281	3.79	0.00	1.6	98.4	0.0	1.88	0.64	0.85	1.65	2.8	0.003	0.52	0.0	0.04	14.93	0.00	2.255	4.33	1.85	0.9	99.1	0.0	2.87	0.24	0.61	0.84	1.62	9882	1299	6	0	6	0	0	logfile
✔	8i9E	35268	2025-02-11	2023-02-06	3.2	3.50	3.01	3.5	0.008	0.74	0.0	0.05	16.27	0.00	2.266	4.96	4.76	9.7	90.3	0.0	-3.37	0.59	0.83	2.70	3.5	0.002	0.57	0.0	0.04	16.36	0.00	2.530	1.68	2.68	5.2	94.8	0.0	-0.16	0.33	0.57	0.81	2.35	6421	764	9	0	13	0	0	logfile
✔	8JY7	36722	2025-02-12	2023-07-03	3.2	2.66	3.25	2.9	0.003	0.60	0.0	0.04	12.18	0.00	2.340	8.29	0.00	3.6	96.4	0.0	1.38	0.60	0.76	2.13	2.9	0.004	0.62	0.0	0.04	13.91	0.00	2.520	7.33	2.61	4.7	95.3	0.0	1.10	1.56	0.65	0.81	2.08	7292	968	4	0	0	0	0	logfile
✔	8JMT	36426	2025-02-10	2023-06-05	3.3	3.55	3.41	3.7	0.003	0.74	0.0	0.04	14.38	0.00	2.204	8.56	0.00	3.5	96.5	0.0	-0.01	0.35	0.59	1.38	3.7	0.003	0.56	0.0	0.04	16.46	0.00	2.630	9.08	2.96	3.1	96.9	0.0	1.87	1.17	0.33	0.60	0.53	1894	234	1	0	0	0	0	logfile
✔	8iLS	35545	2025-02-14	2023-03-04	3.1	3.21	3.09	3.2	0.006	0.55	0.0	0.04	14.93	0.00	1.993	25.11	0.17	6.6	93.3	0.1	-1.20	0.73	0.88	3.51	3.2	0.003	0.55	0.0	0.04	16.23	0.00	2.481	6.73	1.91	4.7	95.3	0.0	0.24	0.93	0.72	0.89	2.50	10374	1253	3	0	1	8	0	logfile
✔	9iRX	60824	2025-02-11	2024-07-16	3.0	3.17	2.86	3.2	0.009	0.58	0.0	0.03	11.28	0.00	2.197	7.04	0.56	2.4	97.6	0.0	2.29	0.65	0.82	3.59	3.2	0.003	0.66	0.0	0.04	15.02	0.00	2.642	8.17	2.22	1.5	98.5	0.0	2.26	0.36	0.61	0.82	2.77	3509	469	2	0	1	0	0	logfile
✔	7XoQ	33356	2025-02-11	2022-05-01	3.3	3.58	3.06	3.4	0.003	0.54	0.0	0.04	11.31	0.00	2.277	8.56	0.00	1.0	99.0	0.0	2.13	0.56	0.85	2.21	3.4	0.003	0.53	0.0	0.04	14.69	0.00	2.580	6.64	2.23	1.0	99.0	0.0	2.40	0.38	0.58	0.87	1.35	3855	524	1	0	0	0	0	logfile
✔	9GG6	51325	2025-02-10	2024-08-13	3.36	3.18	3.07	3.3	0.003	0.71	0.0	0.05	15.58	0.00	2.386	4.80	0.00	6.4	93.6	0.0	-3.00	0.38	0.87	3.89	3.3	0.007	0.73	0.0	0.05	17.63	0.00	2.563	4.57	6.43	9.2	90.8	0.0	-2.26	0.54	0.39	0.89	4.21	2142	288	3	0	0	0	0	logfile
✔	7XoP	33355	2025-02-11	2022-05-01	3.2	3.56	3.01	3.4	0.003	0.49	0.0	0.04	11.43	0.00	2.190	8.30	0.00	1.1	98.9	0.0	2.31	0.56	0.86	3.54	3.4	0.005	0.57	0.0	0.04	13.42	0.00	2.624	8.56	0.00	1.3	98.7	0.0	1.65	0.43	0.59	0.89	2.77	3855	524	1	0	0	0	0	logfile
✘	8GZZ	34406	2025-02-11	2022-09-27	3.52	3.89	3.45	3.7	0.004	0.62	0.0	0.04	12.19	0.00	2.248	8.72	0.00	5.0	95.0	0.0	-0.99	0.78	0.86	3.03	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6568	854	6	0	0	0	0	logfile
✔	7XoR	33357	2025-02-11	2022-05-01	3.3	3.57	3.01	3.4	0.003	0.52	0.0	0.04	12.60	0.00	2.273	9.71	0.00	1.3	98.7	0.0	2.15	0.56	0.86	2.32	3.4	0.002	0.53	0.0	0.04	14.56	0.00	2.596	8.81	0.74	1.3	98.7	0.0	2.15	0.36	0.59	0.88	2.28	3855	524	1	0	0	0	0	logfile
✔	7Y1M	33566	2025-02-13	2022-06-08	3.57	3.80	3.54	3.7	0.004	0.53	0.0	0.04	12.73	0.00	2.234	8.36	0.33	2.1	97.9	0.0	2.52	0.69	0.85	1.58	3.8	0.002	0.60	0.0	0.04	14.76	0.00	2.013	6.52	1.75	1.4	98.6	0.0	3.00	0.96	0.69	0.84	1.15	8957	1166	2	0	5	0	0	logfile
✔	7Y1K	33564	2025-02-13	2022-06-08	3.8	4.04	3.87	4.0	0.005	0.61	0.0	0.04	12.89	0.00	2.011	7.48	2.96	1.7	98.3	0.0	0.96	0.66	0.82	2.35	4.0	0.003	0.63	0.0	0.04	14.38	0.00	1.926	8.14	3.57	2.0	98.0	0.0	2.58	1.03	0.65	0.81	1.39	8510	1164	2	0	5	0	0	logfile
✔	8BLQ	16113	2025-02-13	2022-11-10	3.97	5.74	4.01	3.9	0.002	0.55	0.0	0.04	12.20	0.00	2.201	11.99	0.10	4.9	95.1	0.0	-3.81	0.92	0.71	1.20	3.9	0.003	0.64	0.0	0.04	14.04	0.00	2.566	14.36	1.36	5.8	94.2	0.0	-1.90	1.14	0.94	0.80	1.20	9210	1220	5	0	0	0	0	logfile
✔	7Y49	33604	2025-02-12	2022-06-14	3.67	2.35	3.54	2.2	0.003	0.59	0.0	0.04	14.27	0.00	2.317	5.03	0.47	3.8	96.2	0.0	0.44	0.49	0.66	2.02	2.2	0.003	0.56	0.0	0.04	15.84	0.00	2.543	4.19	2.59	3.8	96.2	0.0	1.02	0.92	0.49	0.68	1.45	4169	565	1	0	0	0	0	logfile
✔	8STE	40759	2025-02-11	2023-05-10	3.34	3.55	3.29	3.5	0.005	0.69	0.0	0.04	14.38	0.00	1.979	10.65	0.00	6.2	93.8	0.0	-0.32	0.57	0.80	2.57	3.5	0.003	0.63	0.0	0.04	16.20	0.00	2.535	6.65	2.39	5.1	94.9	0.0	0.11	0.47	0.57	0.82	2.44	5816	712	4	0	2	0	0	logfile
✔	8PHE	17659	2025-02-13	2023-06-19	3.1	3.23	3.03	3.3	0.003	0.50	0.0	0.04	14.63	0.00	2.148	8.75	0.00	4.1	95.9	0.0	0.27	0.66	0.83	3.12	3.3	0.003	0.51	0.0	0.04	16.90	0.00	2.564	6.40	1.04	3.8	96.2	0.0	1.65	0.35	0.67	0.85	2.95	8914	1132	6	0	0	38	0	logfile
✔	8CUi	27000	2025-02-13	2022-05-17	2.55	2.73	2.53	2.8	0.003	0.53	0.0	0.04	15.72	0.00	2.264	4.77	0.00	1.7	98.3	0.0	1.71	0.63	0.85	3.07	2.8	0.005	0.68	0.0	0.04	16.22	0.00	2.563	3.89	1.96	2.4	97.6	0.0	1.19	0.23	0.62	0.86	3.45	9357	1230	3	0	0	0	0	logfile
✔	8XoH	38529	2025-02-13	2024-01-01	3.2	3.06	3.20	3.2	0.003	0.56	0.0	0.04	15.16	0.00	2.215	4.05	0.21	2.6	97.4	0.0	0.74	0.60	0.81	3.13	3.2	0.004	0.61	0.0	0.04	16.64	0.00	2.355	6.34	2.50	2.6	97.4	0.0	0.98	1.19	0.57	0.81	2.34	8809	1116	5	0	0	0	0	logfile

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