Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8GZ9	34393	2025-02-10	2022-09-26	2.62	2.44	2.40	2.4	0.003	0.69	0.0	0.06	14.01	0.00	2.670	1.93	0.00	0.3	99.7	0.0	-0.15	0.28	0.90	7.26	2.4	0.001	0.52	0.0	0.06	13.89	0.00	2.680	1.74	0.44	0.9	99.1	0.0	0.42	0.26	0.28	0.90	7.78	2426	390	58	0	0	24	0	logfile
✔	8G5B	29738	2025-02-13	2023-02-12	3.1	2.83	2.97	3.0	0.006	0.63	1.0	0.05	13.65	0.01	2.208	7.38	0.70	3.5	96.5	0.0	0.40	0.57	0.84	4.24	3.0	0.002	0.57	0.0	0.04	15.54	0.00	2.608	4.73	3.00	2.8	97.2	0.0	0.66	0.40	0.64	0.88	3.62	9009	1171	8	0	2	0	0	logfile
✔	8T07	40937	2025-02-11	2023-05-31	3.38	3.84	3.51	3.8	0.014	1.71	0.0	0.08	12.73	0.00	2.368	0.90	0.27	3.8	96.2	0.0	-1.32	0.52	0.76	2.89	3.8	0.002	0.58	0.0	0.04	14.84	0.00	2.610	6.49	1.37	2.9	97.1	0.0	1.31	0.56	0.65	0.82	0.89	6710	852	8	0	2	0	0	logfile
✔	8AZ4	15753	2025-02-10	2022-09-05	2.2	2.27	2.10	2.2	0.006	0.72	0.0	0.05	10.22	0.00	2.292	1.89	0.00	7.7	92.3	0.0	-3.94	0.57	0.88	8.31	2.2	0.002	0.60	0.0	0.04	12.95	0.00	2.699	2.12	1.67	7.3	92.7	0.0	-3.94	0.48	0.59	0.90	7.19	2280	280	30	0	10	100	0	logfile
✔	8G15	29662	2025-02-14	2023-02-01	2.07	2.66	1.97	2.4	0.005	0.96	0.0	0.05	16.07	0.01	2.243	5.30	1.59	5.0	95.0	0.0	-1.62	0.88	0.90	5.37	2.4	0.002	0.55	0.0	0.04	16.19	0.01	2.537	2.60	0.84	3.6	96.4	0.0	0.36	0.33	0.87	0.90	5.70	10056	1336	4	0	0	0	0	logfile
✔	8WLR	37629	2025-02-11	2023-09-30	3.12	3.43	3.11	3.3	0.003	0.53	0.0	0.04	16.12	0.00	2.266	4.86	0.14	1.9	98.1	0.0	0.16	0.70	0.88	3.10	3.3	0.002	0.52	0.0	0.04	16.21	0.00	2.330	2.87	1.30	1.1	98.9	0.0	0.89	0.35	0.73	0.89	2.87	6431	792	4	0	2	0	0	logfile
✔	8TiB	41283	2025-02-10	2023-07-19	3.47	3.73	3.31	3.7	0.003	0.62	0.0	0.05	16.69	0.00	2.328	7.86	0.34	6.2	93.8	0.0	-1.60	0.32	0.87	1.51	3.7	0.002	0.50	0.0	0.04	16.68	0.00	2.487	6.77	5.10	5.2	94.6	0.3	-0.75	0.26	0.31	0.87	1.67	2667	393	3	0	0	0	0	logfile
✔	8ZNB	60266	2025-02-11	2024-05-26	2.53	2.68	2.16	2.7	0.007	0.95	0.0	0.05	15.55	0.00	2.421	7.24	2.06	1.2	98.8	0.0	0.61	0.55	0.89	4.44	2.7	0.002	0.58	0.0	0.04	17.27	0.00	2.443	6.19	1.18	1.0	99.0	0.0	1.03	0.90	0.51	0.91	3.98	3342	416	2	0	1	21	0	logfile
✔	8UR3	42480	2025-02-13	2023-10-25	2.61	3.41	2.64	3.1	0.003	0.51	0.0	0.04	13.47	0.00	2.253	4.15	0.00	2.7	97.3	0.0	-0.63	0.86	0.85	3.65	3.0	0.002	0.49	0.0	0.04	15.10	0.00	2.550	5.56	0.77	2.7	97.3	0.0	1.03	0.55	0.87	0.86	3.40	9376	1158	2	0	0	0	0	logfile
✔	8CA1	16515	2025-02-13	2023-01-24	3.9	3.75	4.03	4.0	0.006	0.89	0.0	0.05	14.98	0.01	2.041	10.58	0.00	5.5	94.4	0.2	-1.92	0.78	0.81	2.21	4.0	0.002	0.64	0.0	0.04	15.81	0.00	2.482	8.98	1.38	2.0	98.0	0.0	2.32	1.99	0.77	0.80	1.91	9036	1178	4	0	2	0	0	logfile
✔	8TVB	41636	2025-02-14	2023-08-17	2.9	3.12	2.93	3.2	0.010	1.21	0.0	0.07	10.85	0.01	2.017	1.55	0.00	1.2	98.6	0.2	-0.22	0.73	0.79	4.11	3.2	0.002	0.50	0.0	0.05	15.16	0.00	2.633	2.38	0.80	1.7	98.3	0.0	0.69	2.25	0.67	0.81	4.54	9687	1266	6	0	12	0	0	logfile
✔	9B5L	44216	2025-02-14	2024-03-22	3.3	4.02	3.61	3.8	0.004	0.49	0.0	0.04	10.25	0.00	1.933	2.48	1.42	2.2	97.8	0.0	1.42	0.80	0.81	2.28	3.8	0.002	0.56	0.0	0.04	13.99	0.00	2.468	5.30	1.15	2.0	98.0	0.0	1.39	1.65	0.82	0.84	1.85	10117	1283	6	0	2	0	0	logfile
✔	9JKQ	61567	2025-02-12	2024-09-16	2.66	2.84	2.68	2.9	0.003	0.53	0.0	0.04	13.25	0.00	2.097	5.82	0.00	2.9	97.1	0.0	0.84	0.67	0.82	3.46	2.9	0.002	0.52	0.0	0.04	15.84	0.00	2.561	4.74	2.08	2.6	97.4	0.0	1.24	1.24	0.66	0.84	2.85	8386	1055	6	0	1	0	0	logfile
✔	8iZ8	35835	2025-02-14	2023-04-06	3.13	3.49	3.24	3.4	0.002	0.50	0.0	0.04	14.07	0.00	2.264	6.14	0.00	1.9	98.1	0.0	-0.97	0.55	0.71	0.44	3.4	0.002	0.56	0.0	0.04	16.37	0.00	2.596	7.50	1.96	2.9	97.1	0.0	1.73	1.19	0.59	0.80	1.03	9805	1230	1	0	0	0	0	logfile
✔	8XD1	38262	2025-02-11	2023-12-10	2.96	3.13	1.04	3.1	0.007	0.83	0.0	0.05	18.20	0.01	2.373	6.23	6.49	3.6	96.4	0.0	0.90	0.42	0.85	3.48	3.1	0.002	0.55	0.0	0.04	17.32	0.01	2.496	5.77	0.88	2.9	97.1	0.0	1.60	0.46	0.42	0.88	2.94	3307	416	2	0	1	9	0	logfile
✔	8iDC	35363	2025-02-14	2023-02-12	3.9	5.12	3.90	3.9	0.004	1.02	0.0	0.05	10.68	0.01	2.221	5.95	0.00	6.9	92.9	0.2	-3.33	0.77	0.83	-0.28	3.9	0.002	0.72	0.0	0.04	12.21	0.00	2.506	9.71	0.75	5.7	94.2	0.1	-1.34	0.39	0.77	0.83	0.39	9701	1342	5	0	0	0	0	logfile
✔	8KAE	37008	2025-02-12	2023-08-03	3.18	3.46	3.28	3.5	0.013	1.06	0.0	0.06	13.54	0.01	2.147	7.23	0.00	7.2	92.8	0.0	-1.16	0.61	0.81	3.21	3.5	0.002	0.57	0.0	0.04	14.33	0.00	2.512	4.60	1.43	3.8	96.2	0.0	0.98	1.17	0.62	0.81	2.02	8440	1105	6	0	1	0	0	logfile
✔	8GDC	29946	2025-02-12	2023-03-03	3.5	2.32	3.47	3.6	0.012	1.46	10.0	0.12	13.13	0.01	2.289	9.08	0.62	8.5	91.5	0.0	-3.62	0.72	0.67	2.49	2.2	0.002	0.60	0.0	0.04	14.65	0.00	2.602	5.90	2.27	2.5	97.5	0.0	-0.28	1.11	0.71	0.68	1.70	5657	810	5	0	1	0	0	logfile
✔	8HRL	34977	2025-02-11	2022-12-15	2.8	3.03	2.84	3.1	0.004	0.73	0.0	0.05	18.12	0.01	2.124	7.19	1.59	4.7	95.3	0.0	-1.16	0.64	0.73	1.48	3.1	0.002	0.58	0.0	0.04	18.45	0.00	2.494	3.52	3.03	3.2	96.8	0.0	-0.15	0.55	0.61	0.72	1.35	6412	791	2	0	0	0	0	logfile
✔	8HTi	35010	2025-02-12	2022-12-21	2.97	2.25	2.98	3.1	0.004	0.60	0.0	0.04	15.49	0.00	2.277	5.96	0.00	3.0	97.0	0.0	0.28	0.79	0.85	2.60	3.1	0.002	0.50	0.0	0.04	16.41	0.00	2.570	3.42	2.10	2.3	97.7	0.0	1.14	0.38	0.78	0.84	2.11	7390	962	6	0	1	0	0	logfile

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