Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8G5B	29738	2025-02-13	2023-02-12	3.1	2.83	2.97	3.0	0.006	0.63	1.0	0.05	13.65	0.01	2.208	7.38	0.70	3.5	96.5	0.0	0.40	0.57	0.84	4.24	3.0	0.002	0.57	0.0	0.04	15.54	0.00	2.608	4.73	3.00	2.8	97.2	0.0	0.66	0.40	0.64	0.88	3.62	9009	1171	8	0	2	0	0	logfile
✔	8iZ8	35835	2025-02-14	2023-04-06	3.13	3.49	3.24	3.4	0.002	0.50	0.0	0.04	14.07	0.00	2.264	6.14	0.00	1.9	98.1	0.0	-0.97	0.55	0.71	0.44	3.4	0.002	0.56	0.0	0.04	16.37	0.00	2.596	7.50	1.96	2.9	97.1	0.0	1.73	1.19	0.59	0.80	1.03	9805	1230	1	0	0	0	0	logfile
✔	8UNT	42416	2025-02-11	2023-10-19	3.4	3.76	3.55	3.7	0.005	0.81	0.0	0.05	14.50	0.00	2.232	5.13	0.32	1.4	98.6	0.0	1.29	0.64	0.84	2.66	3.7	0.002	0.50	0.0	0.04	15.18	0.00	2.511	2.72	2.75	1.4	98.6	0.0	1.54	0.36	0.66	0.86	2.37	6712	913	6	0	2	1	0	logfile
✔	9JKQ	61567	2025-02-12	2024-09-16	2.66	2.84	2.68	2.9	0.003	0.53	0.0	0.04	13.25	0.00	2.097	5.82	0.00	2.9	97.1	0.0	0.84	0.67	0.82	3.46	2.9	0.002	0.52	0.0	0.04	15.84	0.00	2.561	4.74	2.08	2.6	97.4	0.0	1.24	1.24	0.66	0.84	2.85	8386	1055	6	0	1	0	0	logfile
✔	8FPS	29369	2025-02-14	2023-01-05	2.38	1.99	2.31	2.3	0.002	0.37	0.0	0.03	16.27	0.00	2.215	3.41	1.01	1.2	98.8	0.0	4.11	0.61	0.84	3.13	2.3	0.002	0.43	0.0	0.03	16.47	0.00	2.625	2.98	1.01	0.9	99.1	0.0	4.21	0.26	0.60	0.85	3.67	10602	1338	20	0	4	152	0	logfile
✔	8FPG	29363	2025-02-14	2023-01-04	2.32	1.99	2.29	2.2	0.003	0.49	0.0	0.04	16.03	0.00	2.165	4.95	1.84	3.9	96.1	0.0	3.31	0.60	0.83	4.63	2.3	0.002	0.45	0.0	0.03	16.22	0.00	2.555	3.84	1.94	3.5	96.5	0.0	4.48	0.29	0.58	0.83	3.95	10674	1348	20	0	4	187	0	logfile
✔	8GGQ	40017	2025-02-10	2023-03-08	3.4	3.52	3.32	3.5	0.004	0.55	0.0	0.04	12.05	0.00	2.313	2.87	0.00	0.7	99.3	0.0	2.40	0.54	0.85	2.97	3.5	0.002	0.46	0.0	0.04	13.56	0.00	2.555	1.92	2.40	0.4	99.6	0.0	3.20	0.25	0.52	0.84	2.57	2130	281	2	0	1	0	0	logfile
✔	8GG7	29997	2025-02-11	2023-03-08	3.3	3.58	3.34	3.6	0.003	0.50	0.0	0.04	13.74	0.00	2.288	4.04	0.16	1.7	98.3	0.0	0.88	0.69	0.86	3.05	3.5	0.002	0.49	0.0	0.04	14.90	0.00	2.436	3.03	1.11	1.5	98.5	0.0	1.28	0.91	0.68	0.86	3.25	6687	903	6	0	2	1	0	logfile
✔	8iRM	35679	2025-02-12	2023-03-19	2.6	2.91	2.63	2.9	0.007	0.68	0.0	0.04	13.13	0.00	2.101	7.26	0.00	3.6	96.4	0.0	0.86	0.67	0.89	4.19	2.8	0.002	0.46	0.0	0.04	14.48	0.00	2.451	20.80	0.93	3.0	97.0	0.0	2.50	1.25	0.64	0.89	3.61	8138	1080	8	2	4	2	8	logfile
✔	8GG8	29998	2025-02-11	2023-03-08	3.3	3.62	3.40	3.6	0.003	0.50	0.0	0.04	13.45	0.00	2.264	4.44	0.16	1.9	98.1	0.0	0.54	0.68	0.85	2.87	3.6	0.002	0.49	0.0	0.04	14.83	0.00	2.428	2.77	1.64	1.9	98.1	0.0	1.28	0.92	0.67	0.85	2.35	6611	906	6	0	2	0	0	logfile
✔	8GE1	29952	2025-02-11	2023-03-06	3.4	3.78	3.54	3.8	0.003	0.51	0.0	0.04	12.49	0.00	2.203	5.64	0.00	2.2	97.8	0.0	1.67	0.71	0.85	3.09	3.8	0.002	0.50	0.0	0.04	14.36	0.00	2.595	4.33	2.90	1.9	98.1	0.0	2.04	0.29	0.65	0.81	2.14	6464	908	5	0	1	0	0	logfile
✔	8iRL	35678	2025-02-12	2023-03-19	2.7	2.78	2.75	2.9	0.007	0.68	0.0	0.05	12.79	0.01	2.014	3.36	0.00	2.4	97.6	0.0	0.48	0.67	0.88	3.54	2.9	0.002	0.53	0.0	0.04	14.63	0.00	2.623	2.08	0.58	2.8	97.2	0.0	2.14	0.34	0.66	0.88	2.50	8108	1080	4	0	4	0	0	logfile
✔	8i9G	35270	2025-02-11	2023-02-06	3.2	3.67	3.09	3.6	0.005	0.67	0.0	0.05	16.41	0.00	2.213	4.97	4.97	6.6	93.4	0.0	-3.28	0.72	0.83	2.49	3.6	0.002	0.59	0.0	0.04	16.50	0.00	2.462	3.31	2.92	4.5	95.5	0.0	-0.15	0.40	0.72	0.83	2.37	6507	778	9	0	13	0	0	logfile
✔	9B5M	44217	2025-02-13	2024-03-22	2.79	3.25	2.83	3.1	0.002	0.45	0.0	0.04	9.70	0.00	2.034	1.18	0.91	2.0	98.0	0.0	1.13	0.67	0.75	3.99	3.1	0.002	0.50	0.0	0.04	13.17	0.00	2.026	2.59	1.11	1.7	98.3	0.0	1.24	1.55	0.68	0.77	3.74	8935	1133	5	0	4	0	0	logfile
✔	8WLR	37629	2025-02-11	2023-09-30	3.12	3.43	3.11	3.3	0.003	0.53	0.0	0.04	16.12	0.00	2.266	4.86	0.14	1.9	98.1	0.0	0.16	0.70	0.88	3.10	3.3	0.002	0.52	0.0	0.04	16.21	0.00	2.330	2.87	1.30	1.1	98.9	0.0	0.89	0.35	0.73	0.89	2.87	6431	792	4	0	2	0	0	logfile
✔	8VE5	43165	2025-02-10	2023-12-18	3.4	3.67	3.31	3.8	0.005	0.58	0.0	0.05	11.51	0.01	2.216	7.40	0.00	2.2	97.8	0.0	0.60	0.72	0.80	4.97	3.8	0.002	0.56	0.0	0.05	14.24	0.01	2.602	5.24	2.64	2.2	97.8	0.0	0.20	0.37	0.71	0.80	4.27	3382	467	5	0	1	0	0	logfile
✔	8S61	19754	2025-02-11	2024-02-26	3.53	3.76	3.50	3.7	0.008	0.63	0.0	0.04	16.57	0.00	1.994	5.65	0.00	6.7	93.3	0.0	-1.96	0.61	0.83	2.65	3.7	0.002	0.57	0.0	0.04	17.11	0.00	2.597	4.77	3.80	5.2	94.8	0.0	-0.05	4.16	0.69	0.84	2.06	3990	502	3	0	1	0	0	logfile
✔	8UBR	42101	2025-02-13	2023-09-24	2.7	2.07	2.73	2.6	0.006	0.83	0.0	0.06	17.61	0.00	1.887	3.81	0.10	1.8	98.2	0.0	0.76	0.61	0.83	2.22	2.6	0.002	0.50	0.0	0.04	17.91	0.00	2.028	3.55	2.17	1.4	98.6	0.0	2.44	0.80	0.61	0.84	2.66	9440	1156	2	0	9	4	0	logfile
✔	9B5L	44216	2025-02-14	2024-03-22	3.3	4.02	3.61	3.8	0.004	0.49	0.0	0.04	10.25	0.00	1.933	2.48	1.42	2.2	97.8	0.0	1.42	0.80	0.81	2.28	3.8	0.002	0.56	0.0	0.04	13.99	0.00	2.468	5.30	1.15	2.0	98.0	0.0	1.39	1.65	0.82	0.84	1.85	10117	1283	6	0	2	0	0	logfile
✔	8GE9	29961	2025-02-11	2023-03-06	3.5	3.79	3.53	3.8	0.003	0.56	0.0	0.04	13.04	0.00	2.215	7.69	0.00	1.7	98.3	0.0	1.38	0.70	0.82	2.93	3.8	0.002	0.49	0.0	0.04	14.72	0.00	2.570	4.73	1.68	1.2	98.8	0.0	1.50	0.33	0.70	0.81	2.45	6519	900	5	0	1	1	0	logfile

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