Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8W6D	37321	2025-02-12	2023-08-28	2.5	2.33	2.45	2.3	0.009	1.08	0.0	0.06	13.67	0.01	2.391	1.35	0.23	5.0	94.9	0.2	-2.77	0.67	0.86	3.20	2.3	0.003	0.65	0.0	0.04	15.35	0.01	2.294	3.77	2.05	4.5	95.5	0.0	1.78	1.15	0.67	0.87	2.94	8304	1058	4	0	6	0	0	logfile
✔	8HRK	34976	2025-02-11	2022-12-15	3.3	3.56	3.36	3.6	0.005	0.71	0.0	0.04	16.73	0.01	2.273	5.11	0.14	3.2	96.8	0.0	-1.80	0.67	0.74	1.69	3.6	0.003	0.61	0.0	0.04	17.43	0.00	2.570	3.52	2.02	3.6	96.4	0.0	-1.04	1.93	0.68	0.81	2.39	6412	791	2	0	0	0	0	logfile
✔	8FRP	29404	2025-02-12	2023-01-07	3.8	4.05	3.81	4.0	0.002	0.43	0.0	0.04	13.74	0.00	2.290	4.81	0.00	1.9	98.1	0.0	-1.11	0.64	0.74	1.40	4.0	0.003	0.77	0.0	0.05	17.49	0.00	2.455	12.33	4.42	2.1	97.9	0.0	1.05	1.00	0.63	0.83	1.46	7488	934	5	0	21	0	0	logfile
✔	8X5X	38074	2025-02-10	2023-11-20	3.5	3.67	4.06	3.8	0.004	0.77	0.0	0.04	14.15	0.00	2.094	14.97	0.43	5.3	94.7	0.0	1.03	0.42	0.53	1.42	3.8	0.003	0.75	0.0	0.04	17.43	0.00	2.642	10.53	4.74	4.1	95.9	0.0	1.19	0.80	0.44	0.56	1.05	2105	256	1	0	0	0	0	logfile
✔	8FJB	29221	2025-02-11	2022-12-19	3.06	3.49	3.03	3.4	0.006	0.68	0.0	0.05	13.23	0.01	2.135	3.71	0.00	2.7	97.2	0.1	-1.47	0.70	0.89	5.11	3.4	0.004	0.58	0.0	0.04	14.76	0.00	2.517	2.26	0.58	2.8	97.2	0.0	1.07	0.91	0.74	0.92	4.40	6330	802	5	0	0	0	0	logfile
✔	8VXA	43615	2025-02-13	2024-02-03	2.79	2.23	2.81	1.9	0.003	0.53	0.0	0.04	15.67	0.00	2.204	10.67	0.00	3.1	96.9	0.0	0.60	0.75	0.73	2.94	1.9	0.003	0.63	0.0	0.04	18.17	0.00	2.477	10.45	3.16	2.7	97.3	0.0	0.91	0.58	0.77	0.77	2.38	9431	1139	3	24	0	0	0	logfile
✔	8JLX	36407	2025-02-10	2023-06-03	3.0	3.13	2.80	3.1	0.004	0.75	0.0	0.05	14.32	0.01	2.247	12.73	0.00	11.9	88.1	0.0	-2.27	0.54	0.71	2.31	3.1	0.004	0.73	0.0	0.05	17.29	0.00	2.499	7.27	4.31	8.1	91.9	0.0	-1.94	0.41	0.53	0.73	2.42	2277	293	3	0	0	0	0	logfile
✔	8CA1	16515	2025-02-13	2023-01-24	3.9	3.75	4.03	4.0	0.006	0.89	0.0	0.05	14.98	0.01	2.041	10.58	0.00	5.5	94.4	0.2	-1.92	0.78	0.81	2.21	4.0	0.002	0.64	0.0	0.04	15.81	0.00	2.482	8.98	1.38	2.0	98.0	0.0	2.32	1.99	0.77	0.80	1.91	9036	1178	4	0	2	0	0	logfile
✔	8T4J	41033	2025-02-12	2023-06-09	3.9	4.16	3.61	4.0	0.002	0.60	0.0	0.04	13.69	0.00	2.275	5.11	0.28	1.8	98.2	0.0	0.48	0.65	0.79	0.89	4.0	0.003	0.63	0.0	0.04	15.51	0.00	2.433	6.37	3.66	1.1	98.9	0.0	1.43	1.31	0.67	0.80	0.66	7824	1107	3	0	0	0	0	logfile
✔	8TEo	41193	2025-02-11	2023-07-06	2.39	2.54	2.25	2.6	0.009	0.97	0.0	0.04	16.68	0.01	2.259	8.59	0.60	2.7	97.3	0.0	2.20	0.63	0.85	4.76	2.5	0.003	0.51	0.0	0.04	14.23	0.00	2.614	5.15	1.51	1.1	98.9	0.0	3.67	0.90	0.65	0.89	5.16	6507	784	12	0	34	9	0	logfile
✔	8J88	36063	2025-02-12	2023-05-01	3.49	4.36	3.55	3.5	0.002	0.56	0.0	0.04	11.87	0.00	2.205	5.61	0.00	4.8	95.2	0.0	-0.95	0.81	0.59	0.05	3.5	0.004	0.71	0.0	0.05	14.42	0.01	2.410	15.43	1.07	8.7	91.3	0.0	-0.85	1.16	0.83	0.65	0.94	7846	954	2	0	0	0	0	logfile
✔	8TZB	41753	2025-02-12	2023-08-26	3.1	2.37	—	3.2	0.006	0.65	0.0	0.04	14.68	0.01	2.177	10.41	0.30	5.7	94.1	0.1	-0.33	0.76	0.73	2.27	3.2	0.003	0.55	0.0	0.04	15.25	0.00	2.396	8.62	1.95	5.0	94.9	0.1	-0.21	0.17	0.75	0.72	2.02	7283	1012	3	0	1	0	0	logfile
✔	8UUK	42588	2025-02-14	2023-11-01	2.5	3.07	2.51	2.9	0.004	0.67	0.0	0.05	21.91	0.00	2.180	11.02	1.53	4.4	95.6	0.0	1.07	0.59	0.84	3.54	3.0	0.003	0.63	0.0	0.04	16.22	0.00	2.539	10.46	2.39	5.0	94.9	0.2	1.30	0.32	0.59	0.83	3.24	10242	1226	4	0	30	0	0	logfile
✔	8W9N	37376	2025-02-11	2023-09-05	2.7	2.62	2.70	2.8	0.004	0.59	0.0	0.04	14.68	0.00	2.189	8.29	0.64	3.4	96.4	0.1	1.27	0.63	0.86	3.23	2.8	0.003	0.51	0.0	0.04	15.33	0.00	2.530	6.78	1.41	2.6	97.3	0.1	2.85	0.98	0.63	0.85	2.63	6860	854	4	0	2	0	0	logfile
✔	8iJ3	35463	2025-02-13	2023-02-24	3.28	3.69	1.23	3.6	0.004	1.08	12.0	0.08	17.30	0.01	2.107	7.58	1.71	5.2	94.8	0.0	-0.17	0.71	0.86	2.48	3.6	0.003	0.62	0.0	0.04	17.63	0.00	2.471	4.57	3.85	4.1	95.8	0.1	0.36	0.31	0.73	0.87	2.41	8772	1134	5	0	0	0	0	logfile
✔	8HVT	35048	2025-02-14	2022-12-27	3.6	3.70	3.55	3.6	0.009	1.11	0.0	0.06	16.30	0.01	2.279	5.59	0.00	6.4	93.6	0.0	-2.49	0.61	0.88	3.03	3.6	0.003	0.66	0.0	0.04	16.01	0.00	2.027	7.32	0.87	4.9	95.1	0.0	2.12	0.39	0.61	0.87	2.35	10702	1366	8	0	12	0	0	logfile
✔	8QRU	18626	2025-02-10	2023-10-09	2.9	3.28	2.75	3.2	0.003	0.52	0.0	0.04	13.62	0.01	2.257	6.45	0.61	2.0	98.0	0.0	1.76	0.50	0.88	4.30	3.2	0.003	0.66	0.0	0.04	15.47	0.01	2.533	7.71	1.83	1.0	99.0	0.0	1.94	0.94	0.50	0.88	3.58	3093	416	2	0	0	0	0	logfile
✔	8J60	33735	2025-02-14	2023-04-24	3.39	3.69	3.37	3.7	0.004	0.81	0.0	0.05	13.93	0.01	2.099	14.77	0.10	4.6	95.1	0.2	-1.00	0.67	0.74	2.77	3.7	0.003	0.69	0.0	0.04	15.73	0.00	2.346	10.96	2.89	5.7	94.3	0.1	-0.72	0.93	0.71	0.78	1.56	9757	1306	4	0	0	0	0	logfile
✔	8Ci8	16671	2025-02-11	2023-02-09	2.67	2.61	2.27	2.7	0.009	1.46	0.0	0.08	13.63	0.01	2.521	0.00	0.00	0.0	100.0	0.0	-4.96	0.64	0.83	3.28	2.7	0.005	0.64	0.0	0.04	16.64	0.00	2.605	9.21	6.40	1.6	98.4	0.0	-3.13	1.20	0.66	0.86	4.97	3430	485	25	0	0	0	0	logfile
✔	8D2o	27144	2025-02-13	2022-05-30	2.66	2.44	2.64	2.7	0.005	0.85	0.0	0.05	21.02	0.01	2.174	4.02	0.00	1.8	98.2	0.0	-1.19	0.66	0.83	4.04	2.7	0.003	0.57	0.0	0.04	21.28	0.00	2.078	8.04	1.32	1.6	98.4	0.0	0.93	0.30	0.67	0.85	3.85	8471	749	8	123	5	3	0	logfile

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