Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	5M6S	3451	2025-02-10	2016-10-25	4.8	5.27	—	6.5	0.005	0.84	0.0	0.04	27.97	0.00	2.447	23.24	44.05	7.3	89.6	3.1	-5.37	0.01	0.04	—	5.4	0.003	0.70	0.0	0.03	17.89	0.00	2.464	6.91	0.00	7.3	92.7	0.0	1.40	2.23	0.03	0.07	—	1593	98	1	0	0	0	793	logfile
✔	5MSH	3565	2025-02-11	2017-01-04	4.25	3.96	—	20.0	0.014	1.56	0.0	0.07	9.56	0.01	2.323	3.07	0.00	6.1	92.5	1.5	-0.93	0.01	0.02	—	3.8	0.003	0.75	0.0	0.05	12.36	0.01	2.560	12.89	0.00	5.9	93.9	0.2	-0.94	1.92	0.04	0.14	—	4287	551	2	0	0	0	0	logfile
✔	7UR5	26705	2025-02-11	2022-04-21	2.6	2.89	2.82	2.9	0.008	1.48	0.0	0.11	29.59	0.01	2.204	2.44	0.00	0.0	0.0	0.0	—	0.05	0.58	—	2.9	0.007	0.97	0.0	0.05	27.17	0.01	1.981	14.29	0.00	0.0	0.0	0.0	—	1.53	0.08	0.70	—	5709	0	3	270	0	0	0	logfile
✔	7URi	26713	2025-02-10	2022-04-22	2.6	2.67	2.95	2.6	0.009	1.37	0.0	0.12	30.06	0.01	2.201	7.31	0.00	0.0	0.0	0.0	—	0.05	0.34	—	2.7	0.007	1.37	0.0	0.06	28.71	0.01	2.201	19.50	0.00	0.0	0.0	0.0	—	2.07	0.08	0.38	—	1905	0	1	90	0	0	0	logfile
✔	8J5Y	33733	2025-02-14	2023-04-24	3.07	3.50	3.24	20.0	0.004	0.84	0.0	0.05	13.88	0.01	2.153	12.97	0.00	6.0	93.7	0.3	-1.55	0.08	0.00	0.39	3.4	0.003	0.75	0.0	0.04	15.90	0.00	2.475	12.55	1.64	6.8	93.1	0.1	-1.29	1.35	0.12	0.06	0.57	10905	1389	4	0	0	0	0	logfile
✔	7URM	26714	2025-02-10	2022-04-22	3.0	3.11	3.56	2.9	0.009	1.41	0.0	0.11	28.63	0.01	2.440	0.70	0.00	0.0	0.0	0.0	—	0.14	0.53	—	3.0	0.007	1.15	0.0	0.05	27.72	0.01	2.028	23.68	0.00	0.0	0.0	0.0	—	1.30	0.15	0.53	—	1905	0	1	90	0	0	0	logfile
✔	8AZS	15770	2025-02-13	2022-09-06	2.9	2.78	2.55	2.8	0.011	1.50	0.0	0.12	16.09	0.01	0.017	1346.67	0.00	3.1	96.9	0.0	-1.98	0.27	0.40	5.06	2.8	0.074	7.47	388.0	0.40	33.42	0.06	1.152	629.53	23.33	39.1	24.5	36.4	-9.07	18.06	0.18	0.16	-0.06	9036	1224	36	0	0	0	0	logfile
✔	8CK0	16688	2025-02-11	2023-02-14	3.8	3.83	3.70	3.8	0.005	0.80	0.0	0.05	16.63	0.01	2.259	15.81	0.00	5.3	94.7	0.0	0.79	0.17	0.78	1.47	3.8	0.003	0.71	0.0	0.04	18.03	0.00	2.477	10.72	4.83	4.0	96.0	0.0	1.92	0.75	0.18	0.79	1.48	3762	478	1	0	0	0	0	logfile
✔	9C4N	45191	2025-02-10	2024-06-04	2.9	2.74	—	3.0	0.013	1.70	0.0	0.06	9.18	0.01	2.779	0.00	0.00	14.3	85.7	0.0	-0.15	0.12	0.70	7.51	3.0	0.060	1.79	1.0	0.22	23.53	0.02	2.477	0.00	25.00	0.0	100.0	0.0	-6.32	1.38	0.19	0.79	5.31	69	9	1	0	0	0	0	logfile
✔	8ACC	15346	2025-02-10	2022-07-05	2.9	3.30	2.80	3.3	0.002	0.70	0.0	0.05	13.62	0.00	2.200	6.25	0.00	11.4	86.5	2.2	-2.46	0.20	0.81	4.38	3.3	0.003	0.61	0.0	0.04	17.16	0.00	2.505	4.76	7.24	11.4	87.8	0.9	-1.60	0.60	0.20	0.83	3.60	1779	231	2	5	0	0	0	logfile
✔	8ACB	15345	2025-02-10	2022-07-05	2.6	2.88	1.65	2.9	0.004	0.71	0.0	0.08	15.24	0.00	2.257	7.47	0.00	7.8	92.2	0.0	-0.81	0.21	0.81	4.10	2.9	0.004	0.64	0.0	0.04	18.06	0.00	2.574	4.88	2.84	9.6	90.4	0.0	-0.58	1.22	0.20	0.83	3.79	1815	220	2	5	0	0	0	logfile
✔	9iWQ	60959	2025-02-11	2024-07-25	2.08	2.25	2.08	2.2	0.022	2.14	21.0	0.22	12.56	0.01	2.493	0.18	0.00	1.0	99.0	0.0	1.04	0.22	0.91	6.38	2.2	0.002	0.44	0.0	0.04	13.91	0.00	2.565	0.70	0.97	0.3	99.7	0.0	3.35	0.97	0.21	0.91	5.15	5683	387	1	0	0	0	2830	logfile
✔	7X34	32978	2025-02-10	2022-02-27	3.1	5.47	3.73	3.1	0.009	1.17	0.0	0.05	24.84	0.01	2.316	5.71	0.00	3.1	96.9	0.0	-2.86	0.21	0.78	1.18	3.3	0.004	0.81	0.0	0.04	25.38	0.00	2.071	29.64	1.30	4.1	95.9	0.0	0.34	0.70	0.21	0.77	-0.93	2762	100	2	94	0	0	0	logfile
✔	3JBS	6478	2025-02-10	2015-10-13	2.9	3.04	—	3.2	0.010	1.32	0.0	0.06	8.67	0.01	2.510	0.00	0.00	2.9	97.1	0.0	0.51	0.21	0.76	4.15	3.0	0.003	0.63	0.0	0.04	17.99	0.00	2.650	5.51	3.95	1.2	98.8	0.0	0.90	1.79	0.21	0.82	3.78	1401	175	1	0	0	0	0	logfile
✔	7QL2	14061	2025-02-10	2021-12-19	2.95	2.96	2.65	3.1	0.010	2.11	2.0	0.11	10.98	0.01	2.674	0.00	0.00	7.6	92.4	0.0	-2.82	0.30	0.74	4.50	3.4	0.003	0.54	0.0	0.05	12.38	0.00	2.625	1.75	1.48	10.4	89.6	0.0	-3.30	0.82	0.22	0.72	4.37	2286	150	3	0	0	0	1179	logfile
✔	8TiF	41286	2025-02-10	2023-07-19	3.89	3.95	3.71	4.1	0.005	0.55	0.0	0.04	17.04	0.00	2.317	8.78	1.02	1.6	98.4	0.0	0.15	0.23	0.85	1.30	4.1	0.004	0.54	0.0	0.04	17.08	0.00	2.619	4.39	5.10	1.6	98.4	0.0	0.67	0.30	0.22	0.85	3.19	889	131	1	0	0	0	0	logfile
✔	8UPY	42457	2025-02-10	2023-10-23	2.8	3.43	3.00	2.9	0.012	1.65	0.0	0.12	28.73	0.01	1.040	88.62	0.00	0.0	0.0	0.0	—	0.18	0.52	—	2.9	0.006	0.78	0.0	0.04	27.61	0.01	2.038	25.14	0.00	0.0	0.0	0.0	—	1.07	0.22	0.75	—	1532	0	1	72	0	0	0	logfile
✔	3JC2	3245	2025-02-11	2015-11-15	3.6	3.58	3.97	3.7	0.012	1.63	2.0	0.08	14.90	0.01	1.175	18.51	7.32	11.5	84.5	4.0	-4.52	0.22	0.59	1.48	3.6	0.003	0.88	0.0	0.04	17.26	0.00	2.574	12.43	1.95	7.9	91.5	0.6	-1.46	2.33	0.23	0.52	1.58	3911	482	4	0	32	0	0	logfile
✔	7FG3	31577	2025-02-13	2021-07-25	3.9	3.62	—	4.0	0.006	1.13	0.0	0.06	14.47	0.01	1.929	37.29	0.00	18.5	80.8	0.7	-4.60	0.22	0.47	-0.27	3.9	0.004	0.94	0.0	0.05	16.64	0.01	2.344	20.63	2.99	13.8	85.6	0.6	-3.61	0.75	0.23	0.44	-0.04	9054	1166	2	0	0	0	0	logfile
✔	8B6Z	15893	2025-02-11	2022-09-27	2.9	3.26	3.37	2.8	0.002	0.51	0.0	0.04	12.07	0.00	2.286	0.59	0.27	1.4	98.6	0.0	-0.69	0.20	0.56	1.62	2.8	0.003	0.73	0.0	0.05	15.35	0.01	2.521	5.37	0.80	3.6	96.4	0.0	-0.29	1.07	0.23	0.76	1.48	3581	442	2	8	0	0	0	logfile

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