Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7U10	26273	2025-02-11	2022-02-19	3.0	3.45	—	4.3	0.004	0.64	0.0	0.05	17.22	0.00	2.031	10.70	0.00	6.8	93.2	0.0	-2.82	0.37	0.64	3.73	4.1	0.004	0.77	0.0	0.06	17.81	0.00	2.543	10.40	2.38	7.0	93.0	0.0	-3.49	2.73	0.24	0.62	3.78	3429	405	6	0	12	0	0	logfile
✔	8oLQ	16961	2025-02-10	2023-03-30	4.0	3.17	3.52	3.7	0.003	0.49	0.0	0.05	7.64	0.00	2.207	3.69	0.00	0.0	100.0	0.0	-0.52	0.25	0.70	—	3.7	0.002	0.46	0.0	0.05	14.60	0.00	2.568	3.28	2.40	6.0	94.0	0.0	-1.70	1.58	0.24	0.71	—	2445	160	5	0	0	0	1185	logfile
✔	7KU5	23034	2025-02-10	2020-11-24	3.76	3.63	—	3.9	0.006	1.29	0.0	0.07	14.85	0.01	2.420	3.63	0.00	12.8	87.2	0.0	-5.41	0.23	0.65	-0.48	3.9	0.003	0.67	0.0	0.05	15.81	0.01	2.630	10.16	1.67	11.6	88.4	0.0	-1.88	1.17	0.24	0.70	2.01	750	88	2	0	4	0	0	logfile
✔	7BC5	12139	2025-02-10	2020-12-18	3.1	3.06	3.11	3.1	0.005	1.05	0.0	0.05	15.92	0.01	2.314	7.83	0.76	8.2	91.8	0.0	-5.64	0.23	0.62	0.92	3.0	0.004	0.81	0.0	0.05	17.27	0.00	2.517	15.24	5.34	7.5	92.5	0.0	-3.13	1.30	0.24	0.59	1.31	1200	161	1	0	0	0	0	logfile
✔	8G9R	29874	2025-02-11	2023-02-21	3.28	3.68	2.90	44.0	0.003	0.59	0.0	0.05	16.84	0.01	2.542	2.24	0.00	5.7	94.3	0.0	-3.38	0.13	0.07	1.03	4.2	0.004	0.79	0.0	0.05	16.51	0.01	2.512	15.96	1.54	10.1	89.9	0.0	-3.55	2.53	0.25	0.32	1.10	3570	455	5	0	0	0	0	logfile
✔	6FU8	4319	2025-02-10	2018-02-26	3.2	4.43	2.98	3.8	0.013	2.11	2.0	0.10	20.18	0.02	2.617	1.47	2.78	11.2	86.2	2.5	-3.87	0.17	0.42	2.23	4.0	0.003	0.79	0.0	0.04	15.48	0.00	2.443	12.46	1.39	8.8	90.0	1.2	-2.70	4.01	0.25	0.69	1.62	1364	82	1	0	0	0	711	logfile
✔	8A06	15051	2025-02-10	2022-05-26	4.0	3.63	3.78	3.8	0.003	0.56	0.0	0.05	13.75	0.00	2.201	6.79	0.73	2.8	97.2	0.0	-0.86	0.27	0.78	—	3.7	0.004	0.66	0.0	0.05	17.36	0.00	2.615	4.67	10.22	4.1	95.9	0.0	-1.29	0.41	0.26	0.80	—	1185	147	1	0	0	0	0	logfile
✔	9HGS	52166	2025-02-10	2024-11-20	3.0	2.93	2.85	3.2	0.010	0.99	0.0	0.08	18.25	0.01	2.341	0.92	1.89	11.3	88.7	0.0	-4.52	0.26	0.73	2.80	3.2	0.002	0.47	0.0	0.05	18.05	0.00	2.640	1.85	3.77	8.5	91.5	0.0	-4.24	0.53	0.26	0.76	3.58	526	75	1	0	0	0	0	logfile
✔	7oG6	12879	2025-02-10	2021-05-06	3.3	3.47	—	2.9	0.008	0.82	0.0	0.04	18.38	0.01	2.325	7.36	6.10	9.6	90.4	0.0	-4.47	0.28	0.82	2.77	2.9	0.003	0.63	0.0	0.04	17.67	0.01	2.519	6.08	1.83	5.1	94.9	0.0	-0.47	0.53	0.27	0.84	2.41	1602	199	2	5	0	0	0	logfile
✔	9EoE	19852	2025-02-10	2024-03-14	2.3	2.15	2.26	2.2	0.009	1.54	2.0	0.10	14.88	0.01	2.621	4.14	4.41	8.0	92.0	0.0	-3.08	0.21	0.80	6.35	2.2	0.005	0.82	0.0	0.06	16.92	0.01	2.631	1.68	4.41	4.0	96.0	0.0	-2.35	1.27	0.27	0.84	7.38	595	77	1	0	0	0	0	logfile
✔	9HGR	52165	2025-02-10	2024-11-20	2.7	2.06	2.33	2.7	0.003	0.47	0.0	0.05	14.29	0.00	2.569	2.04	0.00	3.0	97.0	0.0	-3.44	0.27	0.76	6.46	2.7	0.002	0.45	0.0	0.05	15.99	0.00	2.647	0.00	6.38	7.5	92.5	0.0	-3.67	0.41	0.27	0.77	6.46	960	142	2	0	0	0	0	logfile
✔	9Eo7	19846	2025-02-10	2024-03-14	2.8	2.99	2.48	3.0	0.009	1.59	1.0	0.10	12.22	0.01	2.583	3.31	1.47	6.7	93.3	0.0	-4.16	0.28	0.88	5.19	3.0	0.002	0.54	0.0	0.05	13.60	0.01	2.543	6.71	2.94	1.3	98.7	0.0	-1.78	0.74	0.27	0.87	3.36	595	77	1	0	0	0	0	logfile
✔	6VHL	21207	2025-02-10	2020-01-10	3.3	3.60	—	3.5	0.007	1.03	0.0	0.07	15.85	0.01	1.791	14.51	4.48	14.7	85.3	0.0	-6.30	0.26	0.70	3.54	3.7	0.004	0.78	0.0	0.04	16.71	0.00	2.526	4.56	2.24	10.0	90.0	0.0	-3.04	2.68	0.27	0.70	3.78	1190	158	4	0	0	0	0	logfile
✔	7U15	26278	2025-02-11	2022-02-19	3.0	3.14	—	3.3	0.006	1.22	0.0	0.12	17.23	0.01	1.886	12.16	3.44	3.8	96.2	0.0	-6.51	0.26	0.64	1.55	3.2	0.003	0.71	0.0	0.11	15.78	0.00	2.407	10.40	3.97	16.0	84.0	0.0	-5.26	0.91	0.27	0.69	2.87	6684	405	6	0	12	0	3255	logfile
✔	6iAC	4435	2025-02-12	2018-11-26	3.9	4.05	—	4.0	0.009	1.31	0.0	0.07	12.35	0.01	2.250	5.01	1.10	12.0	87.9	0.2	-4.54	0.26	0.77	1.92	4.0	0.005	0.95	0.0	0.05	16.43	0.01	2.078	12.69	5.50	9.4	90.6	0.0	-0.70	0.94	0.27	0.77	1.60	8210	1057	11	0	0	0	0	logfile
✔	8P34	17383	2025-02-10	2023-05-17	2.61	2.80	2.24	2.8	0.009	1.32	0.0	0.08	11.05	0.01	2.651	0.69	0.00	5.4	94.6	0.0	-1.84	0.29	0.90	7.34	2.8	0.002	0.47	0.0	0.05	14.27	0.00	2.698	0.69	0.00	3.3	96.7	0.0	-1.59	0.32	0.28	0.88	6.21	711	94	1	0	0	0	0	logfile
✔	7ABK	11698	2025-02-10	2020-09-07	3.6	4.10	3.49	3.9	0.004	0.66	0.0	0.04	16.30	0.00	2.315	5.67	1.23	1.5	98.5	0.0	0.91	0.28	0.87	1.10	3.9	0.004	0.65	0.0	0.03	19.60	0.00	2.520	5.04	4.32	2.1	97.9	0.0	4.82	1.54	0.28	0.86	1.10	1574	196	1	0	0	0	0	logfile
✔	8GZ9	34393	2025-02-10	2022-09-26	2.62	2.44	2.40	2.4	0.003	0.69	0.0	0.06	14.01	0.00	2.670	1.93	0.00	0.3	99.7	0.0	-0.15	0.28	0.90	7.26	2.4	0.001	0.52	0.0	0.06	13.89	0.00	2.680	1.74	0.44	0.9	99.1	0.0	0.42	0.26	0.28	0.90	7.78	2426	390	58	0	0	24	0	logfile
✔	8UPT	42455	2025-02-10	2023-10-23	2.8	3.38	2.84	2.9	0.016	2.20	0.0	0.16	30.45	0.01	1.072	99.56	0.00	0.0	0.0	0.0	—	0.23	0.59	—	2.9	0.006	0.72	0.0	0.04	27.67	0.01	2.087	17.90	0.00	0.0	0.0	0.0	—	1.00	0.28	0.88	—	1518	0	1	71	0	0	0	logfile
✔	8RK9	19265	2025-02-11	2023-12-23	3.95	3.73	3.78	20.0	0.002	0.67	0.0	0.05	15.38	0.00	2.268	15.65	0.00	12.8	87.2	0.0	-3.79	0.16	0.00	1.69	7.3	0.004	0.87	0.0	0.05	17.19	0.01	2.529	18.85	2.88	11.9	88.1	0.0	-3.53	4.07	0.28	0.11	-0.96	6138	816	6	0	0	0	0	logfile

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