Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6oG3	20051	2025-02-10	2019-04-01	4.1	5.37	—	6.5	0.005	1.53	0.0	0.00	0.93	0.00	2.539	0.00	0.00	0.0	99.2	0.8	0.27	0.46	0.48	—	6.0	0.005	1.08	0.0	0.00	7.76	0.00	2.614	47.39	0.00	10.9	89.1	0.0	-1.22	2.12	0.67	0.87	—	1215	396	4	0	9	0	0	logfile
✔	7N95	24250	2025-02-12	2021-06-16	4.1	3.45	—	2.1	0.002	0.74	0.0	0.00	5.05	0.00	2.573	0.10	0.00	7.1	92.3	0.6	-1.14	0.78	0.70	—	2.1	0.006	1.29	0.0	0.00	6.65	0.00	2.440	11.36	0.00	21.0	78.7	0.2	-3.63	2.26	0.85	0.84	—	7299	2433	2	0	0	0	0	logfile
✔	7N9Y	24264	2025-02-12	2021-06-18	4.8	4.30	—	2.2	0.019	1.07	0.0	0.00	6.04	0.00	2.538	0.59	0.00	8.5	91.1	0.3	-1.98	0.49	0.33	—	2.3	0.004	1.22	0.0	0.00	6.48	0.00	2.505	15.16	0.00	26.4	73.1	0.5	-4.83	3.35	0.52	0.31	—	7515	2505	2	0	0	0	0	logfile
✔	6TNG	10532	2025-02-12	2019-12-07	4.1	4.25	3.91	4.0	0.008	1.39	0.0	0.00	8.74	0.01	2.183	11.35	0.00	18.9	80.2	0.8	-5.16	0.75	0.70	—	4.0	0.004	0.84	0.0	0.00	5.93	0.00	2.481	2.31	0.00	18.1	81.8	0.1	-2.28	0.37	0.76	0.71	—	8240	2060	2	0	0	0	0	logfile
✔	7N9Q	24259	2025-02-12	2021-06-18	4.6	4.92	—	2.3	0.002	0.88	0.0	0.00	5.65	0.00	2.600	0.00	0.00	8.9	90.3	0.8	-1.59	0.79	0.69	—	2.6	0.006	1.47	0.0	0.00	7.94	0.00	2.432	35.79	0.00	28.5	70.6	1.0	-4.70	2.66	0.86	0.82	—	6945	2315	1	0	0	0	0	logfile
✔	6YW7	10960	2025-02-11	2020-04-29	4.5	5.21	—	4.7	0.021	3.50	0.0	0.09	8.08	0.01	2.034	2.17	0.00	4.5	94.7	0.9	-1.45	0.57	0.32	—	4.6	0.002	0.85	0.0	0.02	5.56	0.00	2.562	8.29	0.00	8.7	91.1	0.2	-1.68	4.73	0.80	0.64	—	5426	1788	9	0	2	0	0	logfile
✔	7RU6	24698	2025-02-11	2021-08-16	4.4	4.33	3.79	4.2	0.003	0.59	0.0	0.04	15.25	0.00	2.027	10.32	0.00	0.3	99.7	0.0	3.15	0.71	0.67	—	4.2	0.003	0.53	0.0	0.03	12.92	0.00	2.488	7.56	0.00	1.6	98.4	0.0	3.52	0.75	0.74	0.71	—	5426	331	2	0	0	0	2725	logfile
✔	8ET7	28587	2025-02-12	2022-10-16	3.77	4.05	3.85	4.0	0.003	0.49	0.0	0.03	11.06	0.00	2.342	3.90	0.24	3.2	96.8	0.0	1.90	0.49	0.70	1.68	4.0	0.003	0.56	0.0	0.03	15.72	0.00	2.398	6.83	2.83	4.5	95.5	0.0	1.96	1.50	0.49	0.72	1.52	8111	532	3	0	3	0	4007	logfile
✔	8HF2	34710	2025-02-11	2022-11-09	4.14	5.08	4.11	4.8	0.012	1.04	0.0	0.05	14.20	0.00	2.264	15.84	0.00	5.1	94.9	0.0	-4.39	0.57	0.77	—	4.7	0.003	0.73	0.0	0.03	14.18	0.00	2.506	10.21	0.00	2.7	97.3	0.0	0.94	2.66	0.52	0.80	—	4660	600	5	0	0	0	0	logfile
✔	7Q2Z	13786	2025-02-12	2021-10-26	3.2	2.91	3.15	3.2	0.002	0.48	0.0	0.03	18.98	0.00	2.227	4.26	0.00	6.5	93.4	0.1	-1.44	0.67	0.80	2.05	3.2	0.003	0.55	0.0	0.03	19.95	0.00	2.375	2.84	1.09	2.5	97.4	0.1	2.17	1.21	0.70	0.86	2.00	8258	902	4	46	0	0	0	logfile
✔	6YE4	10789	2025-02-13	2020-03-24	3.2	3.33	3.07	3.3	0.026	1.69	0.0	0.10	15.50	0.01	2.373	3.02	0.00	0.9	99.1	0.0	-3.36	0.73	0.88	2.50	3.3	0.002	0.48	0.0	0.03	16.50	0.00	2.585	5.18	0.67	2.1	97.9	0.0	4.34	0.93	0.66	0.86	1.36	9140	1180	10	0	5	0	0	logfile
✔	6o84	0650	2025-02-11	2019-03-08	3.92	4.04	—	4.0	0.005	0.84	0.0	0.05	14.01	0.00	2.350	2.97	0.64	4.9	95.1	0.0	-5.68	0.60	0.82	2.21	4.0	0.002	0.66	0.0	0.03	16.14	0.00	2.583	7.42	2.40	4.6	95.4	0.0	1.37	1.25	0.59	0.81	2.14	6224	712	4	0	118	0	0	logfile
✔	5V6P	8637	2025-02-13	2017-03-17	4.1	4.04	—	4.1	0.015	1.37	0.0	0.08	9.65	0.01	2.463	1.41	0.00	2.6	97.0	0.4	0.18	0.40	0.58	—	4.0	0.003	0.64	0.0	0.03	12.94	0.00	2.205	8.49	0.00	2.3	97.4	0.4	3.36	1.54	0.42	0.66	—	9194	540	2	0	0	0	4676	logfile
✔	6oFF	20044	2025-02-14	2019-03-29	3.2	3.32	—	3.3	0.009	0.83	0.0	0.04	10.88	0.01	2.147	4.73	0.00	3.9	96.1	0.0	-5.21	0.59	0.85	4.52	3.3	0.003	0.54	0.0	0.03	15.72	0.00	2.481	5.60	0.59	3.9	96.1	0.0	3.85	0.61	0.61	0.88	3.89	11016	1404	18	0	0	0	0	logfile
✔	8EXA	28656	2025-02-11	2022-10-25	3.14	3.45	3.09	3.4	0.004	0.54	0.0	0.03	22.74	0.00	2.223	15.79	0.40	3.6	96.4	0.0	0.27	0.61	0.69	4.07	3.4	0.003	0.49	0.0	0.03	22.53	0.00	2.450	12.88	2.83	2.7	97.3	0.0	0.92	1.14	0.60	0.68	3.97	5539	341	4	139	0	0	0	logfile
✔	8EQU	28546	2025-02-11	2022-10-09	2.8	3.03	2.80	3.0	0.004	0.79	0.0	0.04	14.51	0.00	2.025	8.25	0.00	1.9	98.1	0.0	-0.12	0.64	0.76	2.12	3.0	0.003	0.59	0.0	0.03	14.95	0.00	2.584	4.86	1.40	1.5	98.5	0.0	0.96	1.04	0.68	0.82	1.83	5764	542	10	0	318	0	0	logfile
✔	7RZV	24779	2025-02-10	2021-08-27	2.11	2.24	—	2.0	0.005	0.35	0.0	0.03	14.68	0.00	2.348	5.44	0.00	0.0	100.0	0.0	3.06	0.79	0.80	2.21	2.0	0.004	0.36	0.0	0.03	15.96	0.00	2.434	3.69	1.01	0.0	100.0	0.0	5.91	0.88	0.83	0.83	1.79	2562	339	6	0	0	0	0	logfile
✔	7RZT	24777	2025-02-10	2021-08-27	2.35	2.27	—	2.1	0.005	0.32	0.0	0.03	14.89	0.00	2.388	3.83	0.00	2.9	97.1	0.0	2.81	0.77	0.79	2.62	2.0	0.004	0.36	0.0	0.03	15.45	0.00	2.447	4.84	0.00	0.3	99.7	0.0	5.95	0.25	0.80	0.83	2.98	2451	324	6	0	0	0	0	logfile
✔	8FA2	28948	2025-02-10	2022-11-25	2.82	2.48	3.15	2.1	0.006	0.55	0.0	0.04	13.54	0.00	2.297	6.56	0.00	1.8	98.2	0.0	-0.12	0.76	0.79	0.72	2.0	0.002	0.43	0.0	0.03	14.51	0.00	2.635	6.17	0.67	0.0	100.0	0.0	5.78	0.35	0.76	0.79	0.45	2577	342	6	0	0	0	0	logfile
✔	8CZi	27098	2025-02-10	2022-05-24	2.22	2.26	2.61	2.0	0.004	0.33	0.0	0.03	14.48	0.00	2.382	6.62	0.00	0.0	100.0	0.0	2.90	0.78	0.80	1.97	2.0	0.003	0.38	0.0	0.03	15.17	0.00	2.440	4.09	1.68	0.0	100.0	0.0	5.65	0.84	0.82	0.84	1.88	2550	339	6	0	0	0	0	logfile

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