Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8XCA	38238	2025-02-12	2023-12-08	3.1	3.84	3.13	3.5	0.002	0.53	0.0	0.03	21.67	0.00	2.212	7.23	0.17	2.7	97.3	0.0	1.11	0.79	0.87	3.07	3.5	0.002	0.53	0.0	0.03	21.54	0.00	2.429	6.18	3.09	2.7	97.3	0.0	1.37	0.73	0.79	0.86	3.20	7106	668	4	79	0	0	0	logfile
✔	9AVi	43902	2025-02-12	2024-03-03	3.02	3.96	3.03	3.7	0.013	1.94	0.0	0.08	14.20	0.01	2.430	9.05	6.29	7.9	92.1	0.0	-5.11	0.80	0.89	2.43	3.7	0.003	0.63	0.0	0.03	15.02	0.00	2.573	4.79	2.17	0.9	99.1	0.0	4.54	0.68	0.76	0.85	1.45	8370	1080	5	0	0	0	0	logfile
✔	7D69	30591	2025-02-14	2020-09-29	3.57	3.34	—	3.6	0.009	0.88	0.0	0.05	28.86	0.01	2.062	19.76	0.00	5.2	94.8	0.0	-1.18	0.78	0.80	2.26	3.6	0.003	0.59	0.0	0.03	28.12	0.00	2.558	11.97	1.94	3.2	96.8	0.0	2.15	1.17	0.77	0.79	1.41	10857	727	10	250	0	0	0	logfile
✔	7DBH	30631	2025-02-14	2020-10-20	3.6	4.18	—	3.4	0.007	0.74	1.0	0.05	28.57	0.00	1.451	11.99	0.17	3.2	96.8	0.0	0.54	0.91	0.85	2.15	3.4	0.004	0.66	0.0	0.03	28.59	0.00	2.143	10.27	1.38	1.9	98.1	0.0	2.87	0.64	0.91	0.85	1.08	10631	697	10	252	0	0	0	logfile
✔	7VBM	31882	2025-02-14	2021-08-31	3.4	2.78	—	3.1	0.005	0.75	1.0	0.04	28.39	0.01	2.221	6.15	0.18	2.0	98.0	0.0	1.47	0.68	0.78	2.79	3.1	0.003	0.56	0.0	0.03	28.70	0.00	2.521	6.10	1.61	1.8	98.2	0.0	2.65	0.29	0.68	0.80	2.01	10475	677	10	252	0	0	0	logfile
✔	8EDL	28035	2025-02-10	2022-09-05	3.7	3.30	3.60	3.1	0.002	0.52	0.0	0.03	11.07	0.00	2.307	6.09	0.00	2.1	97.7	0.3	2.83	0.62	0.61	-0.09	3.1	0.003	0.59	0.0	0.03	13.42	0.00	2.535	6.09	2.31	2.6	97.4	0.0	3.40	1.12	0.68	0.73	2.60	2470	395	1	0	0	0	0	logfile
✔	7RZV	24779	2025-02-10	2021-08-27	2.11	2.24	—	2.0	0.005	0.35	0.0	0.03	14.68	0.00	2.348	5.44	0.00	0.0	100.0	0.0	3.06	0.79	0.80	2.21	2.0	0.004	0.36	0.0	0.03	15.96	0.00	2.434	3.69	1.01	0.0	100.0	0.0	5.91	0.88	0.83	0.83	1.79	2562	339	6	0	0	0	0	logfile
✔	8EQU	28546	2025-02-11	2022-10-09	2.8	3.03	2.80	3.0	0.004	0.79	0.0	0.04	14.51	0.00	2.025	8.25	0.00	1.9	98.1	0.0	-0.12	0.64	0.76	2.12	3.0	0.003	0.59	0.0	0.03	14.95	0.00	2.584	4.86	1.40	1.5	98.5	0.0	0.96	1.04	0.68	0.82	1.83	5764	542	10	0	318	0	0	logfile
✔	7RZQ	24774	2025-02-10	2021-08-27	2.09	2.26	—	2.7	0.006	0.40	0.0	0.03	14.23	0.00	2.339	4.69	0.00	1.9	98.1	0.0	2.15	0.78	0.79	1.56	2.0	0.004	0.35	0.0	0.03	14.97	0.00	2.615	4.49	1.07	0.0	100.0	0.0	5.42	0.29	0.82	0.83	1.87	2421	322	6	0	0	0	0	logfile
✔	8FA2	28948	2025-02-10	2022-11-25	2.82	2.48	3.15	2.1	0.006	0.55	0.0	0.04	13.54	0.00	2.297	6.56	0.00	1.8	98.2	0.0	-0.12	0.76	0.79	0.72	2.0	0.002	0.43	0.0	0.03	14.51	0.00	2.635	6.17	0.67	0.0	100.0	0.0	5.78	0.35	0.76	0.79	0.45	2577	342	6	0	0	0	0	logfile
✔	8HR5	34958	2025-02-12	2022-12-14	3.73	4.01	3.70	4.0	0.004	0.67	0.0	0.05	22.93	0.00	2.191	12.34	3.37	5.6	94.4	0.0	0.07	0.69	0.72	2.02	4.0	0.003	0.57	0.0	0.03	22.61	0.00	2.313	6.92	3.85	3.1	96.9	0.0	2.11	1.29	0.70	0.73	1.25	7595	711	5	123	0	0	0	logfile
✔	8i7N	35223	2025-02-13	2023-02-01	2.98	3.12	2.92	3.0	0.006	0.66	0.0	0.04	23.30	0.00	1.982	2.00	0.00	0.0	0.0	0.0	—	0.82	0.83	—	3.0	0.002	0.47	0.0	0.03	23.04	0.00	1.947	4.30	0.00	0.0	0.0	0.0	—	0.95	0.87	0.90	—	8979	0	2	418	29	0	0	logfile
✔	6o84	0650	2025-02-11	2019-03-08	3.92	4.04	—	4.0	0.005	0.84	0.0	0.05	14.01	0.00	2.350	2.97	0.64	4.9	95.1	0.0	-5.68	0.60	0.82	2.21	4.0	0.002	0.66	0.0	0.03	16.14	0.00	2.583	7.42	2.40	4.6	95.4	0.0	1.37	1.25	0.59	0.81	2.14	6224	712	4	0	118	0	0	logfile
✔	8ET7	28587	2025-02-12	2022-10-16	3.77	4.05	3.85	4.0	0.003	0.49	0.0	0.03	11.06	0.00	2.342	3.90	0.24	3.2	96.8	0.0	1.90	0.49	0.70	1.68	4.0	0.003	0.56	0.0	0.03	15.72	0.00	2.398	6.83	2.83	4.5	95.5	0.0	1.96	1.50	0.49	0.72	1.52	8111	532	3	0	3	0	4007	logfile
✔	8HF2	34710	2025-02-11	2022-11-09	4.14	5.08	4.11	4.8	0.012	1.04	0.0	0.05	14.20	0.00	2.264	15.84	0.00	5.1	94.9	0.0	-4.39	0.57	0.77	—	4.7	0.003	0.73	0.0	0.03	14.18	0.00	2.506	10.21	0.00	2.7	97.3	0.0	0.94	2.66	0.52	0.80	—	4660	600	5	0	0	0	0	logfile
✔	8SRo	40736	2025-02-11	2023-05-05	3.3	3.43	3.26	3.4	0.003	0.56	0.0	0.03	26.26	0.02	2.348	8.41	0.90	5.3	94.7	0.0	-1.78	0.66	0.78	3.49	3.4	0.004	0.57	0.0	0.03	25.91	0.00	2.543	7.30	2.69	6.5	93.5	0.0	-0.70	0.91	0.65	0.78	2.83	4132	345	8	72	0	0	0	logfile
✔	7UTN	26782	2025-02-12	2022-04-27	2.74	3.33	2.90	3.1	0.007	0.68	0.0	0.04	23.53	0.00	2.080	8.58	0.00	1.8	98.2	0.0	0.01	0.86	0.88	4.65	3.1	0.003	0.56	0.0	0.03	23.19	0.00	2.517	6.83	0.58	1.5	98.5	0.0	0.97	0.26	0.82	0.85	3.82	8003	397	4	228	0	0	0	logfile
✔	8CoM	16777	2025-02-14	2023-02-28	3.3	3.62	3.41	3.7	0.004	0.57	0.0	0.03	28.54	0.00	2.228	8.93	0.34	1.7	98.3	0.0	2.02	0.70	0.82	1.34	3.7	0.004	0.59	0.0	0.03	28.52	0.00	2.500	7.79	2.93	1.7	98.3	0.0	1.99	0.91	0.70	0.83	1.30	10705	708	10	254	0	0	0	logfile
✔	8ET6	28586	2025-02-12	2022-10-16	3.57	3.92	3.77	3.9	0.003	0.53	0.0	0.04	11.90	0.00	1.831	5.02	0.47	3.6	96.4	0.0	0.54	0.52	0.71	1.69	3.9	0.002	0.55	0.0	0.03	14.86	0.00	2.389	6.13	3.07	4.2	95.8	0.0	1.38	1.34	0.50	0.71	1.64	8092	532	2	0	2	0	4007	logfile
✔	8FPS	29369	2025-02-14	2023-01-05	2.38	1.99	2.31	2.3	0.002	0.37	0.0	0.03	16.27	0.00	2.215	3.41	1.01	1.2	98.8	0.0	4.11	0.61	0.84	3.13	2.3	0.002	0.43	0.0	0.03	16.47	0.00	2.625	2.98	1.01	0.9	99.1	0.0	4.21	0.26	0.60	0.85	3.67	10602	1338	20	0	4	152	0	logfile

• ← previous
• Page 3 of 255
• next →