Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7FiJ	31599	2025-02-11	2021-07-31	3.8	2.32	—	1.8	0.001	0.41	0.0	0.04	8.02	0.00	2.344	3.95	0.00	4.1	95.9	0.0	1.10	0.58	0.50	3.05	1.6	0.005	0.82	0.0	0.05	11.53	0.00	2.493	10.22	5.00	14.4	85.6	0.0	-1.32	0.68	0.62	0.56	3.46	3061	561	1	0	0	0	0	logfile
✔	8XRQ	38610	2025-02-10	2024-01-08	4.19	2.23	3.70	1.5	0.006	0.87	0.0	0.05	15.75	0.01	2.322	6.69	0.86	11.0	88.8	0.2	-3.50	0.50	0.46	—	1.6	0.004	0.80	0.0	0.05	13.33	0.01	2.425	12.89	0.00	13.7	86.0	0.2	-3.28	1.24	0.53	0.50	—	3210	407	3	0	0	0	0	logfile
✔	8XZJ	38798	2025-02-13	2024-01-21	3.0	2.01	—	1.7	0.011	0.94	0.0	0.06	11.33	0.01	2.252	11.85	2.72	1.8	97.9	0.3	0.36	0.70	0.73	4.12	1.6	0.004	0.65	0.0	0.04	15.14	0.00	2.547	7.97	2.32	2.4	97.5	0.1	0.93	1.18	0.74	0.80	3.12	9106	1162	6	0	0	0	0	logfile
✔	7S8L	24896	2025-02-12	2021-09-18	2.45	2.08	2.46	1.7	0.003	0.56	0.0	0.04	12.22	0.00	2.238	2.45	0.00	3.5	96.5	0.0	1.27	0.81	0.80	4.28	1.7	0.002	0.56	0.0	0.04	15.35	0.00	2.482	2.26	2.92	3.1	96.9	0.0	1.54	0.33	0.84	0.83	3.81	8177	1096	6	0	0	0	0	logfile
✔	8J97	36090	2025-02-11	2023-05-02	3.2	2.37	3.18	1.6	0.007	0.92	1.0	0.05	13.20	0.01	2.266	9.42	0.28	5.8	94.2	0.0	-1.02	0.73	0.71	3.94	1.7	0.005	0.73	0.0	0.05	14.91	0.01	2.551	9.42	2.82	6.2	93.8	0.0	-0.39	0.42	0.73	0.71	3.16	3863	544	4	0	0	0	0	logfile
✔	8iKL	35516	2025-02-11	2023-02-28	2.33	2.00	2.35	1.7	0.004	0.53	0.0	0.04	12.54	0.00	2.191	5.04	0.00	1.6	98.4	0.0	1.25	0.81	0.80	4.16	1.7	0.003	0.53	0.0	0.04	15.27	0.00	2.588	4.68	0.92	2.1	97.9	0.0	1.63	0.34	0.83	0.83	3.65	6942	875	4	0	0	0	0	logfile
✔	7N5F	24188	2025-02-10	2021-06-05	2.7	2.27	2.74	2.0	0.023	1.50	0.0	0.10	9.99	0.01	2.468	0.16	0.00	1.3	98.7	0.0	1.68	0.36	0.75	3.32	1.7	0.003	0.56	0.0	0.04	17.70	0.00	2.567	7.57	2.86	1.9	98.1	0.0	2.90	0.78	0.36	0.78	3.16	3037	386	2	0	1	0	0	logfile
✔	8XZi	38797	2025-02-13	2024-01-21	2.7	1.98	—	1.7	0.021	1.72	2.0	0.09	9.40	0.01	1.226	1.67	0.20	2.2	97.6	0.2	1.22	0.73	0.82	4.38	1.7	0.005	0.72	0.0	0.05	14.90	0.00	2.450	5.64	1.63	3.6	96.4	0.0	1.15	1.09	0.75	0.85	3.42	9041	1149	6	0	1	0	0	logfile
✔	8GB3	29912	2025-02-11	2023-02-24	3.7	2.58	—	1.8	0.003	0.52	0.0	0.04	12.39	0.00	2.202	15.48	4.31	6.9	93.1	0.0	-0.39	0.66	0.61	0.82	1.7	0.003	0.70	0.0	0.04	14.63	0.00	2.545	12.49	3.62	6.2	93.8	0.0	-0.30	0.49	0.66	0.60	0.70	5537	735	3	0	0	0	0	logfile
✔	8WPW	37725	2025-02-14	2023-10-10	2.49	2.20	2.52	1.8	0.003	0.50	0.0	0.04	9.27	0.01	2.131	4.50	1.63	3.2	96.6	0.2	0.00	0.80	0.82	4.52	1.8	0.004	0.64	0.0	0.04	13.56	0.01	2.497	4.60	3.45	3.8	96.1	0.2	0.04	0.94	0.83	0.85	3.92	9930	1294	8	0	3	0	0	logfile
✔	7XW9	33494	2025-02-13	2022-05-26	2.7	2.10	2.82	1.8	0.005	0.68	0.0	0.05	12.26	0.01	2.167	6.26	0.00	3.5	96.5	0.0	0.37	0.78	0.77	3.77	1.8	0.003	0.59	0.0	0.04	15.32	0.00	2.610	5.59	2.35	3.3	96.7	0.0	1.33	1.08	0.79	0.80	3.38	8988	1143	7	0	1	0	0	logfile
✔	7SQG	25384	2025-02-11	2021-11-05	2.6	2.14	—	1.9	0.004	0.60	0.0	0.05	17.27	0.00	2.423	3.35	0.00	3.0	97.0	0.0	1.39	0.75	0.77	3.39	1.8	0.003	0.58	0.0	0.04	17.03	0.00	2.545	7.17	1.74	3.0	97.0	0.0	1.52	0.96	0.81	0.82	3.42	6630	810	6	0	12	0	0	logfile
✔	9C48	45177	2025-02-13	2024-06-03	2.4	2.10	2.43	1.8	0.006	0.90	0.0	0.06	16.10	0.00	2.232	5.54	0.00	2.7	97.3	0.0	-0.49	0.77	0.84	4.87	1.8	0.004	0.59	0.0	0.05	14.82	0.00	2.070	2.58	0.83	2.8	97.2	0.0	0.10	0.36	0.79	0.87	5.40	8481	993	18	0	36	249	0	logfile
✔	8DZP	27804	2025-02-13	2022-08-08	2.71	2.09	2.70	1.9	0.004	0.68	0.0	0.05	13.62	0.01	2.216	5.26	0.11	3.6	96.4	0.0	-0.46	0.78	0.78	3.63	1.8	0.004	0.58	0.0	0.04	15.45	0.00	2.506	5.08	2.35	4.0	96.0	0.0	0.77	0.95	0.80	0.82	3.60	8657	1120	6	0	1	0	0	logfile
✔	8Z6X	39807	2025-02-11	2024-04-19	2.96	3.13	2.88	1.8	0.003	0.54	0.0	0.05	9.21	0.00	2.186	4.00	3.07	7.2	92.6	0.2	-2.58	0.75	0.88	4.17	1.8	0.004	0.76	0.0	0.05	13.74	0.01	2.473	6.05	3.65	7.7	92.3	0.0	-0.66	1.78	0.76	0.92	3.65	4704	618	3	0	0	0	0	logfile
✔	7XA3	33086	2025-02-13	2022-03-17	2.9	2.18	—	2.1	0.005	0.85	0.0	0.05	7.87	0.01	2.250	4.13	0.00	2.5	97.5	0.0	0.60	0.75	0.74	3.21	1.8	0.003	0.60	0.0	0.04	13.78	0.00	2.522	6.59	2.57	2.9	97.1	0.0	1.68	1.15	0.77	0.78	2.88	9591	1220	6	0	0	0	0	logfile
✔	8AG3	15414	2025-02-10	2022-07-19	3.47	2.17	3.26	2.0	0.002	0.60	0.0	0.04	17.16	0.01	2.143	8.90	0.00	6.6	93.4	0.0	-1.45	0.61	0.73	3.03	1.8	0.004	0.63	0.0	0.05	17.38	0.01	2.440	8.14	3.25	8.8	91.2	0.0	-1.30	0.34	0.63	0.77	2.96	2632	322	2	0	0	0	0	logfile
✔	7RPo	24618	2025-02-14	2021-08-03	4.16	2.77	—	1.8	0.003	0.50	0.0	0.04	16.98	0.00	1.759	6.97	1.64	8.5	91.5	0.0	-2.01	0.74	0.71	—	1.8	0.003	0.72	0.0	0.04	18.38	0.00	2.043	9.33	0.00	8.5	91.5	0.0	-2.10	1.71	0.75	0.71	—	10602	1179	9	62	5	0	0	logfile
✔	7WiG	32529	2025-02-13	2022-01-03	2.7	2.14	—	1.8	0.006	0.75	0.0	0.05	13.30	0.00	2.192	6.75	0.00	2.0	98.0	0.0	1.11	0.78	0.77	3.19	1.8	0.003	0.57	0.0	0.04	15.37	0.00	2.518	4.78	1.84	2.4	97.6	0.0	1.49	0.34	0.80	0.80	3.27	8931	1139	6	0	1	0	0	logfile
✔	7N5G	24189	2025-02-10	2021-06-05	2.4	2.16	2.42	1.5	0.022	1.51	0.0	0.09	10.57	0.01	2.386	0.17	0.00	0.8	99.2	0.0	1.84	0.40	0.79	3.64	1.8	0.004	0.58	0.0	0.04	16.22	0.00	2.381	3.41	3.58	1.4	98.6	0.0	3.23	0.57	0.39	0.81	3.11	2926	371	2	0	1	0	0	logfile

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