Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6QPi	4614	2025-02-10	2019-02-14	3.3	3.37	2.73	3.4	0.005	0.70	0.0	0.04	6.59	0.01	2.432	2.09	0.00	1.4	98.6	0.0	-3.02	0.39	0.62	—	3.3	0.002	0.42	0.0	0.04	3.84	0.00	2.638	0.89	0.00	2.6	97.4	0.0	3.06	1.22	0.40	0.61	—	2288	462	2	0	0	0	0	logfile
✔	6U68	20662	2025-02-14	2019-08-29	4.5	4.54	—	4.5	0.006	0.90	0.0	0.06	4.27	0.00	2.419	0.52	0.00	2.6	97.3	0.1	-3.82	0.71	0.71	—	4.5	0.003	0.73	0.0	0.05	4.11	0.00	2.500	2.29	0.00	8.5	91.5	0.0	-0.36	1.79	0.77	0.81	—	10489	2133	8	0	0	0	0	logfile
✔	8G6K	29772	2025-02-13	2023-02-15	3.6	3.71	3.52	3.4	0.002	0.48	0.0	0.04	4.19	0.00	2.523	0.20	0.00	2.7	97.3	0.0	1.65	0.54	0.71	—	3.5	0.003	0.61	0.0	0.04	4.26	0.00	2.434	0.81	0.00	6.1	93.9	0.0	0.79	1.46	0.54	0.74	—	9388	1379	7	0	0	0	2576	logfile
✔	5TTP	8467	2025-02-11	2016-11-04	4.8	4.88	—	4.5	0.006	1.36	0.0	0.06	11.70	0.01	2.038	24.92	0.00	14.1	85.2	0.7	-5.87	0.61	0.60	—	4.6	0.002	0.75	0.0	0.04	4.39	0.00	2.618	1.58	0.00	11.4	88.4	0.2	0.67	1.74	0.67	0.70	—	5616	1138	2	0	0	0	0	logfile
✔	8YY1	39663	2025-02-13	2024-04-03	3.6	3.97	3.61	3.5	0.003	0.56	0.0	0.04	4.69	0.01	2.275	4.11	0.00	5.8	94.2	0.0	2.17	0.63	0.39	—	2.5	0.003	0.60	0.0	0.04	4.46	0.01	2.593	1.77	0.00	5.3	94.7	0.0	2.41	1.74	0.67	0.72	—	9097	1845	14	0	0	0	0	logfile
✔	8oSH	17153	2025-02-11	2023-04-18	4.9	5.59	5.45	4.9	0.006	0.94	0.0	0.06	3.38	0.00	2.299	5.83	0.00	11.2	88.7	0.1	-0.55	0.82	0.82	—	4.9	0.003	0.63	0.0	0.04	4.67	0.00	2.430	3.48	0.00	12.7	87.2	0.1	-1.18	0.53	0.83	0.85	—	6770	1372	5	0	0	0	0	logfile
✔	8SRM	40735	2025-02-11	2023-05-05	4.46	5.07	4.47	4.4	0.003	0.51	0.0	0.03	4.38	0.00	2.233	4.32	0.00	4.0	96.0	0.0	2.57	0.82	0.84	—	4.3	0.005	0.58	0.0	0.04	4.91	0.00	2.443	1.68	0.00	6.4	93.6	0.0	1.00	1.59	0.83	0.86	—	5773	1163	6	0	0	0	0	logfile
✔	7KPW	22990	2025-02-11	2020-11-12	4.9	5.04	4.74	4.9	0.009	1.54	4.0	0.10	1.89	0.01	2.279	3.61	0.00	3.9	94.9	1.2	4.09	0.75	0.67	—	4.9	0.003	0.69	0.0	0.04	4.95	0.00	2.464	0.66	0.00	11.4	88.2	0.5	0.76	2.01	0.82	0.81	—	4313	865	1	0	0	0	0	logfile
✔	8FTK	29439	2025-02-12	2023-01-12	4.56	5.56	4.86	4.4	0.002	0.58	0.0	0.04	4.66	0.00	2.125	4.21	0.00	5.9	94.1	0.0	0.74	0.85	0.81	—	4.4	0.004	0.60	0.0	0.04	4.95	0.00	2.287	2.98	0.00	8.8	91.2	0.0	-0.04	1.28	0.86	0.83	—	7840	1584	1	0	0	0	0	logfile
✔	6VQi	21351	2025-02-11	2020-02-05	4.3	4.89	—	4.2	0.005	1.14	0.0	0.05	3.90	0.01	2.327	1.95	0.00	1.3	98.2	0.5	2.16	0.56	0.73	—	3.8	0.004	0.67	0.0	0.04	4.97	0.00	2.552	4.04	0.00	8.6	91.3	0.1	0.87	0.82	0.57	0.72	—	5278	1062	8	0	0	0	0	logfile
✔	8DXR	27774	2025-02-14	2022-08-02	4.0	4.31	4.01	4.2	0.004	0.81	0.0	0.04	5.27	0.00	2.255	1.54	0.00	11.6	88.3	0.1	-0.80	0.67	0.71	—	4.2	0.004	0.66	0.0	0.04	5.02	0.00	2.529	0.13	0.00	13.0	86.9	0.1	0.32	0.35	0.68	0.72	—	10435	2101	7	0	0	0	0	logfile
✔	6CoZ	7545	2025-02-10	2018-03-13	3.36	4.78	—	4.7	0.009	1.71	0.0	0.07	5.63	0.01	2.541	0.00	0.00	3.2	96.2	0.6	-2.49	0.78	0.68	—	4.4	0.003	0.80	0.0	0.04	5.39	0.00	2.616	1.77	0.00	8.0	92.0	0.0	-2.12	1.59	0.82	0.77	—	1586	320	2	0	0	0	0	logfile
✔	6YW7	10960	2025-02-11	2020-04-29	4.5	5.21	—	4.7	0.021	3.50	0.0	0.09	8.08	0.01	2.034	2.17	0.00	4.5	94.7	0.9	-1.45	0.57	0.32	—	4.6	0.002	0.85	0.0	0.02	5.56	0.00	2.562	8.29	0.00	8.7	91.1	0.2	-1.68	4.73	0.80	0.64	—	5426	1788	9	0	2	0	0	logfile
✔	8URE	42491	2025-02-13	2023-10-25	4.4	3.48	4.69	5.0	0.009	1.42	0.0	0.06	6.50	0.01	2.628	0.00	0.00	1.3	98.7	0.0	-0.01	0.78	0.79	—	4.7	0.009	0.83	0.0	0.03	5.57	0.01	2.468	3.69	0.00	5.7	94.3	0.0	-1.13	0.68	0.82	0.83	—	8896	1792	8	0	0	0	0	logfile
✔	8ViB	43256	2025-02-11	2024-01-03	4.6	7.58	4.37	4.4	0.009	1.12	1.0	0.07	5.12	0.00	2.305	5.79	0.00	5.6	93.5	0.9	-0.39	0.40	0.54	—	4.4	0.003	0.76	0.0	0.04	5.70	0.00	2.472	5.79	0.00	10.6	89.0	0.5	-1.94	3.62	0.49	0.74	—	4421	888	6	0	7	0	0	logfile
✔	8UP1	42442	2025-02-12	2023-10-20	4.55	3.74	4.59	4.7	0.009	1.48	0.0	0.06	6.87	0.01	2.606	0.00	0.00	1.5	98.5	0.0	0.31	0.79	0.80	—	4.7	0.006	0.83	0.0	0.04	5.82	0.00	2.030	6.29	0.00	8.2	91.5	0.3	0.10	2.24	0.82	0.84	—	7088	1428	4	0	0	0	0	logfile
✔	8A64	15205	2025-02-12	2022-06-16	4.6	7.63	4.66	4.6	0.008	0.86	0.0	0.06	10.17	0.01	2.112	20.40	0.00	5.8	94.2	0.0	-1.55	0.91	0.78	—	4.7	0.003	0.68	0.0	0.04	5.83	0.00	2.546	8.96	0.00	6.3	93.7	0.0	-1.04	1.34	0.91	0.79	—	6737	1354	4	0	3	0	0	logfile
✔	6TNG	10532	2025-02-12	2019-12-07	4.1	4.25	3.91	4.0	0.008	1.39	0.0	0.00	8.74	0.01	2.183	11.35	0.00	18.9	80.2	0.8	-5.16	0.75	0.70	—	4.0	0.004	0.84	0.0	0.00	5.93	0.00	2.481	2.31	0.00	18.1	81.8	0.1	-2.28	0.37	0.76	0.71	—	8240	2060	2	0	0	0	0	logfile
✔	6PWC	20505	2025-02-11	2019-07-22	4.9	5.55	—	4.5	0.003	0.67	0.0	0.05	4.68	0.01	2.345	2.19	0.00	1.3	98.7	0.0	-0.09	0.61	0.67	—	4.6	0.003	0.68	0.0	0.04	5.97	0.00	2.484	8.45	0.00	5.4	94.6	0.0	-0.01	2.39	0.61	0.57	—	5879	1055	5	0	0	0	0	logfile
✔	7BZY	30263	2025-02-11	2020-04-29	3.7	5.07	3.67	2.9	0.005	1.03	0.0	0.05	7.60	0.00	2.175	11.89	0.00	15.0	84.6	0.3	-5.26	0.62	0.47	—	3.4	0.004	0.83	0.0	0.05	5.97	0.00	2.470	6.72	0.00	16.1	83.9	0.0	-2.70	1.16	0.85	0.74	—	6169	1260	3	0	0	0	0	logfile

• Page 1 of 255
• next →