Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7N9Y	24264	2025-02-12	2021-06-18	4.8	4.30	—	2.2	0.019	1.07	0.0	0.00	6.04	0.00	2.538	0.59	0.00	8.5	91.1	0.3	-1.98	0.49	0.33	—	2.3	0.004	1.22	0.0	0.00	6.48	0.00	2.505	15.16	0.00	26.4	73.1	0.5	-4.83	3.35	0.52	0.31	—	7515	2505	2	0	0	0	0	logfile
✔	7BZX	30262	2025-02-11	2020-04-28	4.0	4.19	—	3.2	0.019	2.22	9.0	0.12	8.56	0.01	2.485	2.40	0.00	6.6	92.1	1.3	-2.90	0.47	0.25	—	2.9	0.003	0.90	0.0	0.05	6.50	0.00	2.332	7.31	0.00	15.1	84.9	0.0	-3.17	2.86	0.74	0.56	—	5652	1154	2	0	0	0	0	logfile
✔	7N95	24250	2025-02-12	2021-06-16	4.1	3.45	—	2.1	0.002	0.74	0.0	0.00	5.05	0.00	2.573	0.10	0.00	7.1	92.3	0.6	-1.14	0.78	0.70	—	2.1	0.006	1.29	0.0	0.00	6.65	0.00	2.440	11.36	0.00	21.0	78.7	0.2	-3.63	2.26	0.85	0.84	—	7299	2433	2	0	0	0	0	logfile
✔	9C58	45207	2025-02-12	2024-06-06	4.7	4.87	4.69	4.8	0.003	0.73	0.0	0.05	10.28	0.00	1.776	1.47	0.00	2.9	97.1	0.0	0.63	0.70	0.62	—	4.7	0.005	0.76	0.0	0.04	6.86	0.00	1.906	3.11	0.00	8.4	91.6	0.0	-1.17	1.56	0.76	0.73	—	7954	1590	6	0	2	0	0	logfile
✔	7RFP	24444	2025-02-11	2021-07-14	4.4	4.57	—	4.3	0.014	2.06	8.0	0.12	7.12	0.01	1.581	3.60	8.00	9.5	87.5	3.0	-1.46	0.68	0.61	—	4.3	0.004	0.91	0.0	0.04	6.98	0.00	2.434	6.58	0.00	16.5	83.0	0.5	-3.65	1.47	0.81	0.76	—	5532	1114	6	0	0	0	0	logfile
✔	6VAB	21135	2025-02-11	2019-12-17	4.9	6.51	—	6.8	0.005	0.91	0.0	0.06	8.70	0.01	2.264	14.98	0.00	6.8	93.2	0.0	-3.84	0.71	0.69	—	6.6	0.009	0.99	0.0	0.05	7.45	0.01	2.268	13.79	0.00	13.3	86.6	0.1	-2.99	3.04	0.74	0.69	—	4642	938	4	0	0	0	0	logfile
✔	8CTG	26989	2025-02-11	2022-05-14	3.8	3.16	3.72	3.3	0.004	0.98	0.0	0.05	7.62	0.01	2.113	12.33	6.90	9.7	88.5	1.8	-3.04	0.57	0.35	-0.17	2.3	0.004	0.98	0.0	0.04	7.47	0.01	2.306	7.41	3.45	15.6	84.1	0.3	-3.14	2.04	0.60	0.43	1.36	5100	1006	4	0	1	0	0	logfile
✔	7JLX	22383	2025-02-10	2020-07-30	4.6	3.86	—	3.7	0.001	0.42	0.0	0.04	3.80	0.00	2.240	2.96	0.00	6.7	93.3	0.0	1.23	0.54	0.51	—	3.8	0.004	0.88	0.0	0.05	7.64	0.00	2.240	3.38	0.00	18.9	80.5	0.6	-3.12	2.45	0.48	0.54	—	3288	664	4	0	0	0	0	logfile
✔	6oG3	20051	2025-02-10	2019-04-01	4.1	5.37	—	6.5	0.005	1.53	0.0	0.00	0.93	0.00	2.539	0.00	0.00	0.0	99.2	0.8	0.27	0.46	0.48	—	6.0	0.005	1.08	0.0	0.00	7.76	0.00	2.614	47.39	0.00	10.9	89.1	0.0	-1.22	2.12	0.67	0.87	—	1215	396	4	0	9	0	0	logfile
✔	6PZi	20535	2025-02-12	2019-07-31	4.5	4.80	—	4.4	0.005	1.13	0.0	0.05	9.01	0.01	2.253	2.60	0.00	6.3	93.7	0.0	-3.83	0.67	0.80	—	4.4	0.002	0.65	0.0	0.04	7.88	0.00	2.568	3.31	0.00	3.4	96.6	0.0	2.35	0.52	0.67	0.83	—	7985	1412	2	0	1	0	0	logfile
✔	7N9Q	24259	2025-02-12	2021-06-18	4.6	4.92	—	2.3	0.002	0.88	0.0	0.00	5.65	0.00	2.600	0.00	0.00	8.9	90.3	0.8	-1.59	0.79	0.69	—	2.6	0.006	1.47	0.0	0.00	7.94	0.00	2.432	35.79	0.00	28.5	70.6	1.0	-4.70	2.66	0.86	0.82	—	6945	2315	1	0	0	0	0	logfile
✔	7R9K	24328	2025-02-12	2021-06-29	4.1	4.93	—	4.0	0.002	0.35	0.0	0.04	4.65	0.00	2.223	3.24	0.00	10.3	89.1	0.6	-4.05	0.83	0.71	—	4.1	0.002	0.51	0.0	0.04	8.43	0.00	2.449	5.18	0.00	4.4	95.6	0.0	0.16	2.07	0.89	0.83	—	7726	505	1	0	0	0	3938	logfile
✔	5LiJ	4054	2025-02-10	2016-07-14	4.2	3.63	—	4.2	0.009	2.92	4.0	0.17	15.82	0.01	2.249	25.64	0.00	10.7	89.3	0.0	-6.36	0.85	0.76	—	3.8	0.003	0.99	0.0	0.04	8.55	0.00	2.570	10.52	0.00	26.7	73.3	0.0	-5.94	0.59	0.85	0.77	—	761	152	1	0	0	0	0	logfile
✔	8GEJ	29972	2025-02-11	2023-03-06	4.2	4.48	4.17	4.2	0.004	0.50	0.0	0.04	8.38	0.00	2.210	6.00	0.00	3.2	96.8	0.0	1.24	0.71	0.79	—	4.2	0.003	0.48	0.0	0.04	8.59	0.00	2.612	3.00	0.00	3.9	96.1	0.0	0.60	1.10	0.71	0.79	—	5436	950	5	0	1	0	0	logfile
✔	6PZB	20533	2025-02-12	2019-07-31	4.55	4.69	—	4.5	0.009	1.24	0.0	0.06	8.37	0.01	2.231	3.11	0.00	5.9	94.1	0.0	-3.87	0.62	0.76	—	4.5	0.003	0.65	0.0	0.04	8.65	0.00	2.387	4.95	0.00	4.6	95.4	0.0	1.38	0.57	0.64	0.77	—	7747	1357	1	0	0	0	0	logfile
✔	7R9U	24331	2025-02-12	2021-06-29	4.4	5.41	—	4.3	0.002	0.34	0.0	0.04	4.36	0.00	2.248	3.50	0.00	9.1	90.3	0.6	-4.49	0.78	0.62	—	4.3	0.002	0.53	0.0	0.04	8.78	0.00	2.410	4.92	0.00	3.0	97.0	0.0	0.78	2.37	0.91	0.84	—	7727	505	1	0	0	0	3939	logfile
✔	7R9M	24329	2025-02-12	2021-06-29	4.0	4.58	—	3.9	0.002	0.38	0.0	0.04	4.68	0.00	2.214	3.88	0.00	8.3	90.9	0.8	-4.83	0.85	0.77	—	3.9	0.002	0.53	0.0	0.04	9.21	0.00	2.448	5.31	0.49	2.2	97.8	0.0	-0.40	1.71	0.86	0.79	—	7727	505	1	0	0	0	3939	logfile
✔	8GEi	29971	2025-02-11	2023-03-06	4.1	4.35	4.10	4.2	0.003	0.54	0.0	0.04	10.59	0.00	2.226	4.55	0.00	3.1	96.9	0.0	1.03	0.71	0.79	—	4.2	0.003	0.53	0.0	0.04	9.30	0.00	2.601	4.89	0.00	4.0	96.0	0.0	0.94	1.13	0.71	0.80	—	5452	934	5	0	1	0	0	logfile
✔	6DJP	7939	2025-02-12	2018-05-25	4.8	5.02	—	4.8	0.012	2.01	0.0	0.08	11.31	0.01	2.368	0.45	0.00	4.6	95.4	0.0	-0.74	0.76	0.65	—	4.8	0.005	1.04	0.0	0.05	9.38	0.01	2.329	9.19	0.00	14.2	85.8	0.0	-3.57	1.15	0.81	0.75	—	7307	1393	16	0	23	0	0	logfile
✔	6XTB	10618	2025-02-10	2020-01-15	4.3	4.32	—	3.9	0.006	1.17	0.0	0.07	8.68	0.00	2.369	3.00	0.00	15.6	84.4	0.0	-4.66	0.32	0.43	—	4.1	0.005	1.18	0.0	0.05	9.45	0.00	2.559	9.01	0.00	25.1	74.9	0.0	-6.24	2.44	0.34	0.65	—	1161	235	1	0	0	0	0	logfile

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