Table showing results for February 2025

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peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9C6i	45247	2025-02-12	2024-06-07	2.56	3.19	2.65	2.9	0.008	0.68	0.0	0.04	25.62	0.01	1.892	11.33	0.00	0.0	0.0	0.0	—	0.92	0.89	—	2.9	0.010	0.74	0.0	0.05	25.15	0.01	1.844	9.20	0.00	0.0	0.0	0.0	—	1.28	0.93	0.93	—	8471	0	2	393	21	0	0	logfile
✔	7EXA	31367	2025-02-10	2021-05-26	2.9	2.57	—	2.8	0.010	1.22	0.0	0.07	16.18	0.00	1.984	12.75	1.60	2.2	97.8	0.0	-0.45	0.32	0.85	4.31	2.8	0.002	0.50	0.0	0.04	17.62	0.00	2.597	2.78	2.24	0.0	100.0	0.0	2.57	0.87	0.32	0.86	3.28	3088	374	2	6	0	0	0	logfile
✔	8oTF	17177	2025-02-10	2023-04-20	3.3	3.19	3.03	3.4	0.010	1.53	0.0	0.10	16.15	0.01	2.614	4.72	4.35	6.9	93.1	0.0	-4.64	0.49	0.92	5.83	3.4	0.003	0.49	0.0	0.05	16.36	0.00	2.524	3.27	1.45	0.0	100.0	0.0	-0.78	0.49	0.43	0.89	6.50	1350	186	6	0	0	0	0	logfile
✔	8KF5	37199	2025-02-10	2023-08-15	3.4	3.42	3.08	3.6	0.009	0.83	0.0	0.08	15.44	0.00	2.343	20.58	8.00	3.1	96.9	0.0	-3.84	0.38	0.87	7.61	3.5	0.003	0.59	0.0	0.06	15.87	0.00	2.658	4.32	0.00	0.0	100.0	0.0	-0.04	0.92	0.38	0.88	8.22	1500	204	6	0	0	0	0	logfile
✔	8KF4	37198	2025-02-10	2023-08-15	3.0	3.12	2.82	3.2	0.010	0.77	0.0	0.07	12.82	0.00	2.605	1.00	0.00	0.0	100.0	0.0	-4.40	0.39	0.91	6.86	3.3	0.003	0.48	0.0	0.06	14.12	0.00	2.664	1.33	0.00	0.0	100.0	0.0	-1.06	1.19	0.38	0.91	7.82	1500	204	6	0	0	0	0	logfile
✔	8K15	36786	2025-02-14	2023-07-10	2.58	2.79	2.58	2.9	0.009	1.04	0.0	0.06	25.09	0.01	1.850	4.02	0.00	0.0	0.0	0.0	—	0.70	0.81	—	2.8	0.009	0.91	0.0	0.05	24.72	0.01	1.745	4.29	0.00	0.0	0.0	0.0	—	0.29	0.68	0.82	—	10093	0	2	470	2	0	0	logfile
✔	8TJX	41313	2025-02-12	2023-07-24	2.44	3.10	2.65	2.9	0.006	0.64	0.0	0.04	24.81	0.01	1.872	12.24	0.00	0.0	0.0	0.0	—	0.85	0.85	—	2.9	0.007	0.63	0.0	0.04	23.99	0.01	1.833	9.77	0.00	0.0	0.0	0.0	—	0.82	0.84	0.86	—	7839	0	2	365	27	0	0	logfile
✔	8UPT	42455	2025-02-10	2023-10-23	2.8	3.38	2.84	2.9	0.016	2.20	0.0	0.16	30.45	0.01	1.072	99.56	0.00	0.0	0.0	0.0	—	0.23	0.59	—	2.9	0.006	0.72	0.0	0.04	27.67	0.01	2.087	17.90	0.00	0.0	0.0	0.0	—	1.00	0.28	0.88	—	1518	0	1	71	0	0	0	logfile
✔	8TJU	41311	2025-02-14	2023-07-24	3.46	4.75	3.48	3.4	0.006	0.67	0.0	0.04	25.59	0.01	1.874	27.33	0.00	0.0	0.0	0.0	—	0.93	0.86	—	3.4	0.008	0.71	0.0	0.04	24.83	0.01	1.789	23.91	0.00	0.0	0.0	0.0	—	0.46	0.94	0.91	—	8771	0	2	409	27	0	0	logfile
✔	6PoM	20416	2025-02-11	2019-07-04	4.9	5.01	—	5.0	0.003	0.64	0.0	0.03	25.63	0.00	2.075	3.10	0.00	0.0	0.0	0.0	—	0.61	0.64	—	5.0	0.006	0.94	0.0	0.05	26.62	0.01	1.998	32.05	0.00	0.0	0.0	0.0	—	1.73	0.75	0.79	—	4937	0	2	230	0	0	0	logfile
✔	8Q2L	18112	2025-02-10	2023-08-02	2.2	2.31	2.29	2.3	0.013	2.22	2.0	0.22	14.08	0.01	2.506	1.04	0.00	1.9	98.1	0.0	-2.11	0.40	0.87	5.99	2.3	0.004	0.64	0.0	0.05	19.35	0.00	2.634	2.83	1.85	0.0	100.0	0.0	-1.91	1.24	0.41	0.93	7.16	3300	432	6	0	0	0	0	logfile
✔	8TJV	41312	2025-02-14	2023-07-24	2.99	3.53	2.99	3.1	0.006	0.61	0.0	0.04	24.19	0.00	1.526	10.47	0.00	0.0	0.0	0.0	—	0.91	0.89	—	3.1	0.010	0.75	0.0	0.05	23.73	0.01	1.090	11.61	0.00	0.0	0.0	0.0	—	0.98	0.92	0.93	—	8778	0	2	409	32	0	0	logfile
✔	8TJQ	41308	2025-02-13	2023-07-24	3.4	4.09	3.45	3.4	0.005	0.63	0.0	0.03	24.84	0.00	1.883	19.77	0.00	0.0	0.0	0.0	—	0.90	0.85	—	3.4	0.009	0.78	0.0	0.04	24.52	0.01	1.771	21.71	0.00	0.0	0.0	0.0	—	0.17	0.92	0.90	—	9296	0	2	433	28	0	0	logfile
✔	7RX5	24725	2025-02-13	2021-08-21	3.4	3.65	—	3.6	0.002	0.25	0.0	0.03	11.98	0.00	2.288	5.05	0.00	0.0	100.0	0.0	4.54	0.70	0.85	3.58	3.6	0.002	0.32	0.0	0.03	12.78	0.00	2.693	2.28	0.00	0.0	100.0	0.0	5.58	0.18	0.70	0.87	2.85	9120	1160	40	0	0	0	0	logfile
✔	7QV6	14168	2025-02-11	2022-01-19	3.5	3.33	3.32	3.5	0.011	0.59	0.0	0.05	11.56	0.00	2.480	1.86	0.00	1.1	98.9	0.0	-1.85	0.39	0.86	5.72	3.5	0.002	0.42	0.0	0.06	11.94	0.00	2.496	1.65	0.00	0.0	100.0	0.0	0.67	0.40	0.40	0.86	6.10	4842	306	18	0	0	0	2556	logfile
✔	9C4N	45191	2025-02-10	2024-06-04	2.9	2.74	—	3.0	0.013	1.70	0.0	0.06	9.18	0.01	2.779	0.00	0.00	14.3	85.7	0.0	-0.15	0.12	0.70	7.51	3.0	0.060	1.79	1.0	0.22	23.53	0.02	2.477	0.00	25.00	0.0	100.0	0.0	-6.32	1.38	0.19	0.79	5.31	69	9	1	0	0	0	0	logfile
✔	6QJP	4565	2025-02-10	2019-01-24	3.5	3.64	2.32	4.1	0.009	1.01	0.0	0.07	9.52	0.01	2.605	1.16	0.00	3.2	96.8	0.0	-2.50	0.37	0.74	3.05	4.2	0.002	0.60	0.0	0.05	12.51	0.00	2.600	7.52	3.92	0.0	100.0	0.0	-2.97	1.60	0.31	0.71	2.85	816	105	3	0	0	0	0	logfile
✔	8UPY	42457	2025-02-10	2023-10-23	2.8	3.43	3.00	2.9	0.012	1.65	0.0	0.12	28.73	0.01	1.040	88.62	0.00	0.0	0.0	0.0	—	0.18	0.52	—	2.9	0.006	0.78	0.0	0.04	27.61	0.01	2.038	25.14	0.00	0.0	0.0	0.0	—	1.07	0.22	0.75	—	1532	0	1	72	0	0	0	logfile
✔	8AZ1	15729	2025-02-10	2022-09-05	3.1	3.21	3.04	3.5	0.004	0.58	0.0	0.04	10.90	0.00	2.374	8.00	0.00	0.0	100.0	0.0	-1.57	0.49	0.85	5.69	3.5	0.004	0.53	0.0	0.05	12.99	0.00	1.620	3.14	0.00	0.0	100.0	0.0	-2.21	0.43	0.47	0.85	5.53	1830	250	20	0	10	0	0	logfile
✔	9C6J	45248	2025-02-12	2024-06-07	2.41	3.08	2.55	2.9	0.008	0.79	0.0	0.05	25.12	0.01	1.871	10.86	0.00	0.0	0.0	0.0	—	0.87	0.89	—	2.9	0.008	0.67	0.0	0.04	24.39	0.01	1.886	8.14	0.00	0.0	0.0	0.0	—	0.26	0.87	0.91	—	8345	0	2	387	21	0	0	logfile

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