Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8GGM	40013	2025-02-10	2023-03-08	3.2	3.34	3.12	3.3	0.004	0.54	0.0	0.04	13.21	0.00	2.297	2.30	0.00	1.4	98.6	0.0	2.21	0.53	0.88	3.55	3.3	0.003	0.52	0.0	0.04	14.79	0.00	2.628	1.84	2.24	0.7	99.3	0.0	2.48	0.26	0.53	0.88	2.56	2211	287	2	0	1	0	0	logfile
✔	8GGK	40011	2025-02-10	2023-03-08	3.3	3.43	3.21	3.4	0.004	0.55	0.0	0.04	12.87	0.00	2.259	2.28	0.00	1.4	98.6	0.0	1.77	0.58	0.88	3.16	3.4	0.004	0.52	0.0	0.04	14.15	0.00	2.615	1.83	2.22	1.1	98.9	0.0	2.09	0.23	0.57	0.88	3.10	2218	288	2	0	1	2	0	logfile
✔	8GGi	40009	2025-02-10	2023-03-08	3.5	3.66	3.43	3.6	0.004	0.69	0.0	0.04	13.75	0.00	2.242	4.12	0.00	1.4	98.6	0.0	1.47	0.58	0.87	2.35	3.6	0.003	0.52	0.0	0.04	15.31	0.00	2.642	1.83	0.89	1.4	98.6	0.0	1.69	0.33	0.58	0.87	2.88	2203	284	2	0	1	2	0	logfile
✔	8GG3	29993	2025-02-11	2023-03-08	3.1	3.37	3.14	3.3	0.003	0.53	0.0	0.04	13.40	0.00	2.221	3.58	0.00	1.7	98.3	0.0	0.53	0.67	0.87	3.73	3.3	0.003	0.51	0.0	0.04	15.08	0.00	2.524	1.98	1.65	1.7	98.3	0.0	1.25	1.26	0.67	0.88	3.08	6753	894	6	0	2	6	0	logfile
✔	8GFY	29988	2025-02-11	2023-03-08	3.0	3.27	3.07	3.2	0.003	0.46	0.0	0.04	12.90	0.00	2.222	2.02	0.00	1.7	98.3	0.0	0.86	0.68	0.89	3.61	3.2	0.003	0.50	0.0	0.04	15.51	0.00	2.511	1.78	0.78	1.9	98.1	0.0	1.26	0.27	0.65	0.88	3.63	6670	891	6	0	2	4	0	logfile
✔	8GFW	29986	2025-02-11	2023-03-08	3.0	3.33	3.12	3.3	0.004	0.57	0.0	0.04	13.59	0.00	2.197	3.13	0.00	2.0	98.0	0.0	0.93	0.66	0.88	4.09	3.3	0.002	0.50	0.0	0.04	15.73	0.00	2.514	1.68	2.00	1.8	98.2	0.0	1.44	0.92	0.66	0.89	3.58	6749	900	8	0	2	5	0	logfile
✔	8GG6	29996	2025-02-11	2023-03-08	3.3	3.48	3.26	3.5	0.004	0.55	0.0	0.04	15.25	0.00	2.213	3.55	0.31	1.3	98.7	0.0	0.67	0.70	0.88	3.24	3.5	0.002	0.52	0.0	0.04	15.71	0.00	2.507	2.16	2.95	1.7	98.3	0.0	1.01	0.24	0.68	0.87	2.91	6725	904	6	0	2	4	0	logfile
✔	8GGF	40005	2025-02-11	2023-03-08	3.6	4.03	3.80	4.0	0.005	0.79	0.0	0.05	13.58	0.00	2.147	7.95	0.00	4.4	95.6	0.0	-0.06	0.67	0.82	2.11	4.0	0.003	0.55	0.0	0.04	15.03	0.00	2.468	4.02	2.63	3.8	96.2	0.0	0.52	0.37	0.67	0.82	2.01	6607	956	6	0	2	0	0	logfile
✔	8GGE	40004	2025-02-11	2023-03-08	3.5	3.98	3.76	3.9	0.003	0.59	0.0	0.04	12.44	0.00	2.232	6.77	0.00	3.6	96.4	0.0	-0.02	0.66	0.81	2.59	3.9	0.003	0.55	0.0	0.04	14.46	0.00	2.456	3.26	1.77	3.5	96.5	0.0	0.41	0.36	0.67	0.82	1.87	6708	984	6	0	2	0	0	logfile
✔	8GG5	29995	2025-02-11	2023-03-08	3.2	3.42	3.22	3.4	0.004	0.52	0.0	0.04	14.02	0.00	2.292	2.43	0.00	2.8	97.2	0.0	0.36	0.66	0.87	3.91	3.4	0.002	0.46	0.0	0.04	15.44	0.00	2.516	2.35	0.90	1.6	98.4	0.0	1.41	0.30	0.69	0.87	2.77	6799	904	6	0	2	5	0	logfile
✔	8GG1	29991	2025-02-11	2023-03-08	3.0	3.30	3.07	3.3	0.003	0.54	0.0	0.04	13.13	0.00	2.195	3.43	0.00	1.6	98.4	0.0	0.62	0.66	0.87	3.71	3.3	0.003	0.52	0.0	0.04	15.46	0.00	2.512	2.44	1.66	1.6	98.4	0.0	1.71	0.32	0.63	0.86	3.26	6755	896	6	0	2	5	0	logfile
✔	8Uo2	42425	2025-02-11	2023-10-19	3.6	4.02	3.83	4.0	0.005	0.76	0.0	0.05	13.65	0.00	2.237	5.87	0.40	1.7	98.3	0.0	1.29	0.63	0.80	3.52	4.0	0.002	0.47	0.0	0.04	14.61	0.00	2.502	3.19	2.20	1.5	98.5	0.0	1.96	0.93	0.65	0.81	2.99	6504	956	6	0	2	0	0	logfile
✔	8GFZ	29989	2025-02-11	2023-03-08	3.0	3.28	3.08	3.3	0.003	0.50	0.0	0.04	13.53	0.00	2.201	2.21	0.00	1.7	98.3	0.0	0.72	0.65	0.88	4.18	3.3	0.003	0.54	0.0	0.04	15.51	0.00	2.492	1.91	1.80	1.8	98.2	0.0	1.42	0.28	0.66	0.88	3.37	6744	891	6	0	2	5	0	logfile
✔	8UNY	42421	2025-02-11	2023-10-19	3.6	4.06	3.81	4.0	0.006	0.97	0.0	0.06	14.64	0.01	2.255	7.64	0.00	1.7	98.3	0.0	1.32	0.63	0.80	2.56	4.0	0.002	0.54	0.0	0.04	14.51	0.00	2.507	4.02	2.09	1.1	98.9	0.0	1.58	0.97	0.65	0.81	2.62	6546	912	6	0	2	0	0	logfile
✔	8UNX	42420	2025-02-11	2023-10-19	3.6	3.87	3.64	3.9	0.006	0.96	0.0	0.06	13.81	0.01	2.177	5.50	0.00	2.3	97.7	0.0	1.34	0.63	0.82	2.78	3.9	0.002	0.53	0.0	0.04	14.77	0.00	2.505	3.38	1.34	1.2	98.8	0.0	1.65	0.41	0.65	0.84	2.17	6688	923	6	0	2	0	0	logfile
✔	8GG8	29998	2025-02-11	2023-03-08	3.3	3.62	3.40	3.6	0.003	0.50	0.0	0.04	13.45	0.00	2.264	4.44	0.16	1.9	98.1	0.0	0.54	0.68	0.85	2.87	3.6	0.002	0.49	0.0	0.04	14.83	0.00	2.428	2.77	1.64	1.9	98.1	0.0	1.28	0.92	0.67	0.85	2.35	6611	906	6	0	2	0	0	logfile
✔	8GG4	29994	2025-02-11	2023-03-08	3.2	3.40	3.18	3.4	0.003	0.48	0.0	0.04	13.92	0.00	2.201	2.13	0.00	2.6	97.4	0.0	1.09	0.71	0.88	3.56	3.4	0.002	0.46	0.0	0.04	15.12	0.00	2.499	2.06	1.65	1.5	98.5	0.0	1.67	0.90	0.69	0.88	2.66	6764	896	6	0	2	4	0	logfile
✔	8Uo0	42423	2025-02-11	2023-10-19	3.5	4.01	3.77	4.0	0.006	0.93	0.0	0.06	13.94	0.01	2.268	5.98	0.21	2.5	97.5	0.0	1.21	0.61	0.80	1.82	4.0	0.003	0.51	0.0	0.04	14.61	0.00	2.518	3.47	3.70	2.3	97.7	0.0	1.70	0.34	0.63	0.82	1.59	6222	902	6	0	2	0	0	logfile
✔	8GG2	29992	2025-02-11	2023-03-08	3.0	3.31	3.09	3.3	0.003	0.48	0.0	0.04	13.48	0.00	2.216	3.25	0.00	1.6	98.4	0.0	0.64	0.65	0.87	3.47	3.3	0.002	0.49	0.0	0.04	15.49	0.00	2.511	2.27	1.78	1.5	98.5	0.0	1.51	1.27	0.60	0.84	3.09	6800	896	6	0	2	6	0	logfile
✔	8UNU	42417	2025-02-11	2023-10-19	3.5	3.84	3.62	3.8	0.005	0.83	0.0	0.05	14.14	0.00	2.227	6.74	0.50	1.5	98.5	0.0	1.67	0.63	0.83	2.91	3.8	0.003	0.52	0.0	0.04	15.14	0.00	2.436	2.97	2.18	1.7	98.3	0.0	1.71	0.39	0.64	0.84	2.55	6514	890	6	0	2	0	0	logfile

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