Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6oR5	9032	2025-02-14	2019-04-29	4.0	4.23	—	3.9	0.008	1.12	0.0	0.05	15.95	0.00	2.245	4.84	0.00	17.3	82.4	0.3	-5.53	0.76	0.79	—	3.9	0.003	0.66	0.0	0.04	10.21	0.00	2.507	1.21	0.00	16.9	83.1	0.0	-2.12	1.36	0.78	0.80	—	10364	2058	2	0	5	0	0	logfile
✔	6QVD	4649	2025-02-13	2019-03-01	4.34	5.50	4.28	6.0	0.010	1.81	8.0	0.10	12.96	0.01	2.193	12.88	3.61	9.6	90.1	0.3	-4.01	0.68	0.75	—	5.3	0.003	0.87	0.0	0.05	12.28	0.00	2.427	14.86	0.00	7.7	92.1	0.2	-0.50	1.40	0.67	0.71	—	9212	1192	2	0	0	0	0	logfile
✔	7UBB	26437	2025-02-12	2022-03-14	4.5	5.42	4.95	5.3	0.002	0.68	0.0	0.04	14.32	0.00	2.231	14.38	0.00	0.9	99.1	0.0	-1.04	0.40	0.59	—	5.3	0.003	0.73	0.0	0.05	15.05	0.00	2.380	11.84	0.00	4.5	95.5	0.0	-2.48	1.43	0.38	0.55	—	7448	896	8	0	0	0	0	logfile
✔	7JGG	22326	2025-02-11	2020-07-19	4.88	8.00	—	7.7	0.002	0.46	0.0	0.03	13.22	0.00	1.988	54.49	0.00	3.3	96.5	0.2	1.67	0.66	0.64	—	7.6	0.002	0.49	0.0	0.03	12.90	0.00	2.246	73.58	0.00	4.5	95.5	0.0	1.76	1.71	0.67	0.70	—	4210	506	1	0	0	0	28	logfile
✔	7K9L	22754	2025-02-14	2020-09-29	4.9	4.39	—	4.7	0.007	1.19	0.0	0.07	15.28	0.01	2.254	9.45	3.96	3.5	96.5	0.0	-1.98	0.67	0.78	—	4.6	0.004	0.74	0.0	0.04	13.68	0.00	2.525	16.66	0.00	4.1	95.9	0.0	-0.01	0.96	0.69	0.78	—	10472	1372	4	0	0	0	0	logfile
✔	6QVB	4646	2025-02-13	2019-03-01	4.34	5.06	4.26	4.4	0.010	1.72	8.0	0.09	12.75	0.01	2.153	12.31	3.10	10.3	89.5	0.2	-4.45	0.67	0.75	—	4.4	0.004	0.93	0.0	0.05	12.48	0.00	2.329	19.13	0.00	9.1	90.9	0.0	-0.52	0.90	0.67	0.75	—	9237	1193	2	0	0	0	0	logfile
✔	6DZY	8942	2025-02-12	2018-07-05	4.1	4.52	4.39	4.6	0.006	0.88	4.0	0.06	12.39	0.01	1.386	9.20	1.32	4.7	95.2	0.1	-2.99	0.42	0.61	—	4.5	0.003	0.80	0.0	0.05	12.93	0.00	2.481	12.16	0.00	5.7	94.2	0.1	-0.52	1.84	0.44	0.67	—	7842	988	6	0	4	0	0	logfile
✔	7oCY	12816	2025-02-12	2021-04-28	4.25	4.55	4.29	4.4	0.003	0.62	0.0	0.04	12.49	0.00	1.980	9.97	0.00	4.9	95.1	0.0	-0.08	0.73	0.77	—	4.4	0.003	0.66	0.0	0.04	12.69	0.00	2.471	7.65	0.00	2.2	97.8	0.0	0.98	1.14	0.74	0.78	—	7994	1243	3	0	0	0	0	logfile
✔	8CGG	16642	2025-02-10	2023-02-04	2.5	2.67	2.48	2.7	0.011	1.67	0.0	0.08	16.62	0.01	2.637	6.41	0.00	11.5	88.5	0.0	-5.62	0.55	0.94	8.29	2.7	0.004	0.85	0.0	0.04	17.07	0.00	2.634	0.78	0.00	5.1	94.9	0.0	-4.93	0.95	0.51	0.92	7.73	2710	400	5	0	0	0	0	logfile
✔	6JC3	9793	2025-02-11	2019-01-28	4.8	4.87	—	4.8	0.010	1.35	2.0	0.07	16.29	0.01	1.512	30.30	3.10	10.1	89.1	0.8	-4.39	0.42	0.78	—	4.7	0.003	0.67	0.0	0.04	14.43	0.00	2.590	7.69	0.00	4.1	95.9	0.0	0.81	4.20	0.42	0.80	—	3154	391	2	6	0	0	0	logfile
✔	6Y97	10733	2025-02-11	2020-03-06	4.33	4.65	—	4.5	0.002	0.58	0.0	0.04	14.61	0.00	2.147	7.17	0.00	5.2	94.8	0.0	1.11	0.69	0.62	—	4.5	0.003	0.70	0.0	0.04	13.40	0.00	2.562	10.36	0.00	6.5	93.5	0.0	0.73	0.84	0.71	0.71	—	4366	564	4	0	0	0	0	logfile
✔	7YCG	33738	2025-02-13	2022-07-01	3.18	4.71	3.37	3.5	0.002	0.50	0.0	0.03	24.46	0.00	1.893	15.83	0.00	0.0	0.0	0.0	—	0.94	0.84	—	3.5	0.008	0.69	0.0	0.04	24.55	0.00	1.842	30.51	0.00	0.0	0.0	0.0	—	0.33	0.95	0.89	—	8661	0	3	404	4	0	0	logfile
✔	6QVU	4657	2025-02-13	2019-03-05	4.2	6.05	4.20	6.9	0.006	1.31	0.0	0.06	12.34	0.01	2.191	10.73	1.99	9.3	90.7	0.0	-4.21	0.65	0.75	—	6.9	0.003	0.86	0.0	0.05	11.37	0.01	2.417	17.58	0.00	7.9	92.1	0.0	-0.56	1.38	0.66	0.77	—	9272	1198	2	0	0	0	0	logfile
✔	7YGD	33816	2025-02-12	2022-07-11	3.41	4.13	3.42	3.3	0.002	0.49	0.0	0.03	24.63	0.00	2.100	14.25	0.00	0.0	0.0	0.0	—	0.90	0.81	—	3.3	0.008	0.78	0.0	0.04	25.33	0.01	1.824	28.58	0.00	0.0	0.0	0.0	—	1.89	0.91	0.89	—	8313	0	4	389	6	0	0	logfile
✔	7WXG	32878	2025-02-11	2022-02-14	4.2	4.21	3.56	4.2	0.012	1.07	0.0	0.05	15.42	0.00	2.184	12.87	0.29	10.7	89.3	0.0	-5.16	0.51	0.80	—	4.2	0.003	0.71	0.0	0.04	14.53	0.00	2.383	8.48	0.00	7.0	93.0	0.0	-0.45	1.22	0.51	0.78	—	3295	430	2	0	1	0	0	logfile
✔	7XD3	33134	2025-02-13	2022-03-26	4.05	4.16	—	3.8	0.003	0.62	0.0	0.04	24.05	0.00	1.960	1.21	0.00	0.0	0.0	0.0	—	0.85	0.74	—	3.9	0.006	0.76	0.0	0.04	24.27	0.01	1.714	13.21	0.00	0.0	0.0	0.0	—	1.80	0.87	0.80	—	9062	0	2	423	28	0	0	logfile
✔	6CoZ	7545	2025-02-10	2018-03-13	3.36	4.78	—	4.7	0.009	1.71	0.0	0.07	5.63	0.01	2.541	0.00	0.00	3.2	96.2	0.6	-2.49	0.78	0.68	—	4.4	0.003	0.80	0.0	0.04	5.39	0.00	2.616	1.77	0.00	8.0	92.0	0.0	-2.12	1.59	0.82	0.77	—	1586	320	2	0	0	0	0	logfile
✔	7YG8	33811	2025-02-12	2022-07-11	2.97	3.59	3.04	3.0	0.002	0.48	0.0	0.03	24.52	0.00	2.042	13.48	0.00	0.0	0.0	0.0	—	0.89	0.82	—	3.0	0.008	0.71	0.0	0.04	24.57	0.00	1.803	17.58	0.00	0.0	0.0	0.0	—	0.39	0.91	0.90	—	8440	0	4	395	5	0	0	logfile
✔	7QTJ	14142	2025-02-14	2022-01-14	4.01	4.23	—	4.1	0.004	0.73	4.0	0.05	15.20	0.01	2.144	8.44	1.27	5.2	94.5	0.3	0.17	0.63	0.74	—	4.1	0.002	0.64	0.0	0.04	13.26	0.00	2.421	7.11	0.00	4.6	95.2	0.2	-0.35	0.46	0.63	0.74	—	9942	1280	8	0	5	0	0	logfile
✔	6X0V	21985	2025-02-10	2020-05-17	4.5	4.37	—	4.4	0.003	0.62	1.0	0.04	11.58	0.00	2.285	15.16	4.48	3.5	96.0	0.5	-2.45	0.40	0.74	—	4.4	0.002	0.46	0.0	0.03	11.61	0.00	2.465	17.39	0.00	4.0	96.0	0.0	2.56	1.19	0.40	0.75	—	1384	211	4	0	0	0	62	logfile

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