Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8JJE	36345	2025-02-12	2023-05-30	3.4	3.75	3.47	3.7	0.011	1.51	1.0	0.09	16.24	0.01	1.829	0.77	1.86	2.5	97.5	0.0	-2.00	0.70	0.83	3.16	3.7	0.003	0.62	0.0	0.04	15.55	0.00	2.261	3.85	3.30	2.8	97.2	0.0	0.51	1.36	0.72	0.82	2.49	6670	794	8	0	20	1	0	logfile
✔	8AMF	15525	2025-02-14	2022-08-03	3.8	4.56	—	4.4	0.007	0.99	0.0	0.07	18.67	0.01	2.281	6.91	0.77	7.6	92.4	0.0	-3.87	0.55	0.84	1.57	4.4	0.003	0.75	0.0	0.05	19.59	0.00	2.315	9.81	2.31	5.1	94.9	0.0	-0.95	1.36	0.55	0.83	1.44	10507	1332	10	20	4	0	0	logfile
✔	8iJ3	35463	2025-02-13	2023-02-24	3.28	3.69	1.23	3.6	0.004	1.08	12.0	0.08	17.30	0.01	2.107	7.58	1.71	5.2	94.8	0.0	-0.17	0.71	0.86	2.48	3.6	0.003	0.62	0.0	0.04	17.63	0.00	2.471	4.57	3.85	4.1	95.8	0.1	0.36	0.31	0.73	0.87	2.41	8772	1134	5	0	0	0	0	logfile
✔	8PM4	17757	2025-02-11	2023-06-28	2.93	3.28	3.02	3.2	0.007	0.63	0.0	0.04	20.61	0.01	2.220	11.13	1.32	1.7	98.3	0.0	1.17	0.74	0.82	2.99	3.2	0.008	0.67	0.0	0.04	21.23	0.01	2.491	8.26	1.54	2.2	97.8	0.0	1.26	1.14	0.74	0.83	3.08	6624	604	4	96	0	0	0	logfile
✔	8U3E	41859	2025-02-11	2023-09-07	3.19	3.64	3.08	3.6	0.009	0.69	0.0	0.05	13.04	0.00	2.280	5.97	0.00	6.4	93.6	0.0	-3.53	0.54	0.83	4.61	3.6	0.003	0.59	0.0	0.04	14.74	0.01	2.613	4.03	1.14	3.3	96.7	0.0	1.13	0.38	0.51	0.85	3.21	3338	427	1	0	0	0	0	logfile
✔	8QRU	18626	2025-02-10	2023-10-09	2.9	3.28	2.75	3.2	0.003	0.52	0.0	0.04	13.62	0.01	2.257	6.45	0.61	2.0	98.0	0.0	1.76	0.50	0.88	4.30	3.2	0.003	0.66	0.0	0.04	15.47	0.01	2.533	7.71	1.83	1.0	99.0	0.0	1.94	0.94	0.50	0.88	3.58	3093	416	2	0	0	0	0	logfile
✔	8R8K	19002	2025-02-11	2023-11-29	3.41	3.66	3.37	3.7	0.003	0.49	0.0	0.04	15.09	0.00	2.145	4.83	0.23	2.6	97.4	0.0	-0.18	0.58	0.84	2.55	3.7	0.003	0.50	0.0	0.04	15.63	0.00	2.624	4.06	3.18	4.3	95.7	0.0	-0.18	0.30	0.59	0.85	2.39	4005	515	3	0	0	0	0	logfile
✔	8HVT	35048	2025-02-14	2022-12-27	3.6	3.70	3.55	3.6	0.009	1.11	0.0	0.06	16.30	0.01	2.279	5.59	0.00	6.4	93.6	0.0	-2.49	0.61	0.88	3.03	3.6	0.003	0.66	0.0	0.04	16.01	0.00	2.027	7.32	0.87	4.9	95.1	0.0	2.12	0.39	0.61	0.87	2.35	10702	1366	8	0	12	0	0	logfile
✔	8Ci8	16671	2025-02-11	2023-02-09	2.67	2.61	2.27	2.7	0.009	1.46	0.0	0.08	13.63	0.01	2.521	0.00	0.00	0.0	100.0	0.0	-4.96	0.64	0.83	3.28	2.7	0.005	0.64	0.0	0.04	16.64	0.00	2.605	9.21	6.40	1.6	98.4	0.0	-3.13	1.20	0.66	0.86	4.97	3430	485	25	0	0	0	0	logfile
✔	8SKS	40566	2025-02-11	2023-04-20	2.91	3.52	2.94	3.4	0.004	0.55	0.0	0.04	11.98	0.00	1.880	7.37	0.00	3.1	96.9	0.0	0.81	0.82	0.84	5.54	3.4	0.003	0.56	0.0	0.04	15.12	0.00	2.037	4.83	2.06	3.6	96.4	0.0	1.29	1.14	0.81	0.83	4.71	6232	792	8	0	4	0	0	logfile
✔	8TEQ	41195	2025-02-11	2023-07-06	2.84	3.16	2.42	3.1	0.003	0.56	0.0	0.04	17.77	0.01	2.300	6.75	0.00	2.0	98.0	0.0	-4.35	0.66	0.92	6.41	3.1	0.003	0.60	0.0	0.04	18.69	0.00	2.575	3.76	2.72	4.6	95.4	0.0	-2.96	0.47	0.64	0.93	5.82	6705	825	30	0	0	0	0	logfile
✔	8AZ4	15753	2025-02-10	2022-09-05	2.2	2.27	2.10	2.2	0.006	0.72	0.0	0.05	10.22	0.00	2.292	1.89	0.00	7.7	92.3	0.0	-3.94	0.57	0.88	8.31	2.2	0.002	0.60	0.0	0.04	12.95	0.00	2.699	2.12	1.67	7.3	92.7	0.0	-3.94	0.48	0.59	0.90	7.19	2280	280	30	0	10	100	0	logfile
✔	8AXA	15697	2025-02-13	2022-08-31	2.96	3.56	2.99	3.1	0.003	0.57	0.0	0.03	23.95	0.01	2.143	11.47	0.49	6.3	93.7	0.0	0.01	0.82	0.76	2.74	3.1	0.005	0.97	1.0	0.04	23.67	0.01	2.025	11.60	4.13	7.4	92.6	0.0	-0.02	0.36	0.84	0.79	2.54	9142	465	6	253	0	3	0	logfile
✔	8BV5	16255	2025-02-11	2023-01-04	3.54	2.97	3.43	3.9	0.003	0.66	0.0	0.05	19.37	0.00	1.934	17.97	0.59	5.7	94.3	0.0	-0.26	0.67	0.65	1.40	3.8	0.003	0.69	0.0	0.04	19.17	0.00	1.921	11.23	4.55	5.9	94.0	0.1	-0.09	0.87	0.66	0.66	1.32	6296	767	4	0	3	0	0	logfile
✔	8iYW	35831	2025-02-12	2023-04-06	3.45	3.86	3.54	3.8	0.005	0.84	0.0	0.05	12.73	0.01	2.252	5.71	1.45	3.3	96.7	0.0	0.09	0.68	0.79	3.77	3.8	0.004	0.63	0.0	0.04	13.96	0.00	2.472	4.76	3.48	3.6	96.4	0.0	0.88	0.38	0.63	0.76	3.06	7849	1118	6	0	1	0	0	logfile
✔	8FEH	29027	2025-02-10	2022-12-06	3.28	4.31	3.36	3.4	0.008	1.02	0.0	0.07	14.17	0.01	2.317	7.23	1.83	7.1	92.9	0.0	-3.45	0.45	0.76	1.53	3.5	0.004	0.66	0.0	0.04	15.12	0.00	2.545	9.48	1.38	5.3	94.7	0.0	-1.63	2.58	0.47	0.89	2.23	1993	268	1	0	0	0	0	logfile
✔	8Y66	38968	2025-02-11	2024-02-01	3.28	3.92	3.35	3.9	0.006	0.76	0.0	0.05	14.11	0.01	2.223	10.92	0.26	3.4	96.6	0.0	1.27	0.45	0.67	1.39	3.9	0.003	0.62	0.0	0.04	16.22	0.00	2.507	7.51	4.17	2.4	97.6	0.0	1.82	0.35	0.47	0.70	1.02	3606	467	2	0	1	0	0	logfile
✔	8FAi	28957	2025-02-12	2022-11-27	3.0	2.58	3.05	2.7	0.011	1.63	0.0	0.04	15.88	0.00	2.395	4.13	0.00	0.0	100.0	0.0	3.16	0.53	0.80	3.27	2.6	0.003	0.63	0.0	0.04	15.87	0.00	2.227	5.24	6.94	0.1	99.9	0.0	3.85	2.69	0.54	0.83	1.91	7845	1020	25	0	15	0	0	logfile
✔	8R3Z	18878	2025-02-11	2023-11-10	3.4	4.16	3.41	3.9	0.004	0.65	0.0	0.05	17.44	0.00	1.932	14.50	0.29	3.5	96.5	0.0	-0.21	0.83	0.79	1.95	3.9	0.003	0.58	0.0	0.04	17.67	0.00	1.946	11.23	3.00	3.1	96.9	0.0	0.26	0.51	0.82	0.78	1.53	6389	755	3	6	1	0	0	logfile
✘	8PB1	17580	2025-02-11	2023-06-08	3.5	3.99	3.47	3.7	0.005	0.86	0.0	0.06	15.49	0.01	2.253	6.71	0.26	3.7	96.3	0.0	-0.98	0.75	0.78	2.11	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6652	829	8	0	8	1	0	logfile

• Page 1 of 255
• next →