Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7R6L	24281	2025-02-12	2021-06-22	2.85	3.04	—	3.0	0.008	0.89	0.0	0.05	25.02	0.01	1.985	4.24	0.00	0.0	0.0	0.0	—	0.67	0.86	—	3.0	0.008	0.78	0.0	0.04	24.59	0.01	1.899	6.35	0.00	0.0	0.0	0.0	—	0.10	0.62	0.86	—	7857	0	3	366	20	0	0	logfile
✔	7T2E	25611	2025-02-10	2021-12-03	2.7	3.14	—	3.0	0.003	0.54	0.0	0.04	16.11	0.00	2.242	1.92	1.18	0.3	99.7	0.0	0.14	0.34	0.84	5.04	3.0	0.002	0.49	0.0	0.04	16.19	0.00	2.587	1.50	0.79	0.6	99.4	0.0	0.57	0.14	0.36	0.86	4.75	2390	312	2	0	0	0	0	logfile
✔	7UZU	26918	2025-02-12	2022-05-09	2.3	2.23	2.31	2.2	0.003	0.57	0.0	0.04	17.47	0.01	2.124	3.14	0.52	3.1	96.9	0.0	1.73	0.60	0.87	5.53	2.2	0.002	0.48	0.0	0.03	17.50	0.00	2.450	2.60	0.78	4.0	96.0	0.0	2.71	0.15	0.58	0.86	5.58	7399	483	4	0	0	79	3655	logfile
✔	8TZB	41753	2025-02-12	2023-08-26	3.1	2.37	—	3.2	0.006	0.65	0.0	0.04	14.68	0.01	2.177	10.41	0.30	5.7	94.1	0.1	-0.33	0.76	0.73	2.27	3.2	0.003	0.55	0.0	0.04	15.25	0.00	2.396	8.62	1.95	5.0	94.9	0.1	-0.21	0.17	0.75	0.72	2.02	7283	1012	3	0	1	0	0	logfile
✔	8QT9	18646	2025-02-11	2023-10-12	2.36	2.58	2.35	2.6	0.005	0.68	0.0	0.04	20.32	0.00	2.158	5.55	0.58	1.3	98.7	0.0	0.58	0.62	0.80	3.59	2.6	0.003	0.65	0.0	0.04	19.32	0.00	2.519	4.82	2.02	2.3	97.7	0.0	1.49	0.17	0.61	0.80	3.68	3511	399	2	0	4	64	0	logfile
✔	8Y2C	38850	2025-02-11	2024-01-25	3.16	3.42	3.25	3.5	0.003	0.51	0.0	0.04	19.03	0.00	2.160	5.35	0.00	4.2	95.8	0.0	0.76	0.55	0.83	1.39	3.5	0.002	0.48	0.0	0.04	17.60	0.00	2.630	3.21	3.38	3.6	96.4	0.0	1.37	0.17	0.56	0.83	0.87	4207	529	2	0	2	0	0	logfile
✔	7R6M	24282	2025-02-12	2021-06-22	3.68	3.27	—	3.4	0.006	0.94	0.0	0.04	25.58	0.01	2.005	4.72	0.00	0.0	0.0	0.0	—	0.53	0.72	—	3.4	0.007	0.87	0.0	0.04	25.54	0.01	1.758	13.81	0.00	0.0	0.0	0.0	—	0.17	0.55	0.73	—	7755	0	3	362	13	0	0	logfile
✔	8TJQ	41308	2025-02-13	2023-07-24	3.4	4.09	3.45	3.4	0.005	0.63	0.0	0.03	24.84	0.00	1.883	19.77	0.00	0.0	0.0	0.0	—	0.90	0.85	—	3.4	0.009	0.78	0.0	0.04	24.52	0.01	1.771	21.71	0.00	0.0	0.0	0.0	—	0.17	0.92	0.90	—	9296	0	2	433	28	0	0	logfile
✔	9D8P	46645	2025-02-11	2024-08-19	3.2	3.70	3.13	3.5	0.003	0.48	0.0	0.04	15.51	0.00	2.213	9.78	0.00	2.1	97.9	0.0	0.36	0.80	0.84	3.38	3.5	0.003	0.51	0.0	0.04	15.76	0.00	2.506	5.89	3.63	2.1	97.9	0.0	0.19	0.18	0.79	0.84	3.24	4073	537	4	0	0	0	0	logfile
✔	7RX5	24725	2025-02-13	2021-08-21	3.4	3.65	—	3.6	0.002	0.25	0.0	0.03	11.98	0.00	2.288	5.05	0.00	0.0	100.0	0.0	4.54	0.70	0.85	3.58	3.6	0.002	0.32	0.0	0.03	12.78	0.00	2.693	2.28	0.00	0.0	100.0	0.0	5.58	0.18	0.70	0.87	2.85	9120	1160	40	0	0	0	0	logfile
✔	8WTV	37843	2025-02-11	2023-10-19	2.7	2.75	2.65	2.8	0.004	0.54	0.0	0.04	15.81	0.01	2.297	1.86	0.22	2.3	97.7	0.0	1.82	0.66	0.88	2.95	2.8	0.003	0.50	0.0	0.04	16.10	0.00	2.284	1.16	1.77	2.4	97.6	0.0	2.01	0.18	0.70	0.89	2.77	4325	536	2	0	6	3	0	logfile
✔	7UKG	26580	2025-02-13	2022-04-01	2.24	2.56	2.27	2.5	0.006	0.58	0.0	0.04	13.16	0.00	2.208	6.08	0.00	1.8	98.2	0.0	2.95	0.68	0.88	4.70	2.5	0.003	0.49	0.0	0.04	14.07	0.00	2.625	5.23	0.65	1.4	98.6	0.0	3.75	0.18	0.69	0.89	4.25	8652	1128	10	0	4	0	0	logfile
✔	8GGL	40012	2025-02-10	2023-03-08	3.2	3.43	3.25	3.4	0.005	0.62	0.0	0.04	12.38	0.00	2.312	3.08	0.00	1.1	98.9	0.0	1.05	0.54	0.86	2.40	3.4	0.003	0.50	0.0	0.04	14.04	0.00	2.614	1.66	3.76	1.1	98.9	0.0	1.92	0.19	0.53	0.86	1.96	2151	284	2	0	1	1	0	logfile
✔	8QBN	18316	2025-02-12	2023-08-24	3.2	3.27	3.06	3.2	0.004	0.59	0.0	0.05	14.30	0.00	2.206	4.37	0.27	4.3	95.7	0.0	-0.65	0.84	0.87	3.32	3.3	0.002	0.49	0.0	0.04	15.21	0.00	2.581	2.84	1.06	4.2	95.8	0.0	-0.22	0.20	0.85	0.89	3.17	7021	897	6	0	3	0	0	logfile
✔	8G14	29661	2025-02-14	2023-02-01	2.3	3.02	2.27	2.7	0.005	0.72	0.0	0.06	15.72	0.01	2.404	2.41	1.13	3.9	96.1	0.0	-1.00	0.89	0.94	5.31	2.7	0.002	0.47	0.0	0.05	15.70	0.00	2.620	1.05	0.28	2.5	97.5	0.0	0.81	0.20	0.88	0.93	5.01	10020	1336	4	0	0	0	0	logfile
✔	9JDB	61387	2025-02-11	2024-08-31	2.64	2.91	2.73	2.9	0.007	1.10	0.0	0.04	18.08	0.00	2.250	4.26	1.41	2.0	98.0	0.0	0.01	0.70	0.87	4.46	2.9	0.005	0.79	0.0	0.05	17.87	0.01	2.592	3.56	1.13	2.6	97.4	0.0	0.06	0.20	0.70	0.87	4.20	6592	808	4	0	2	0	0	logfile
✔	8WRD	37774	2025-02-11	2023-10-13	3.05	3.46	3.00	3.4	0.004	0.55	0.0	0.04	15.71	0.00	2.177	4.66	0.14	3.0	97.0	0.0	0.84	0.69	0.84	2.84	3.4	0.003	0.56	0.0	0.04	15.92	0.00	2.511	4.42	4.13	2.7	97.3	0.0	0.89	0.20	0.65	0.87	2.82	6326	830	3	0	0	0	0	logfile
✔	9BLU	44677	2025-02-11	2024-05-01	3.38	3.73	3.50	3.8	0.003	0.45	0.0	0.04	18.95	0.00	2.214	6.89	3.18	2.9	97.1	0.0	1.22	0.68	0.79	1.04	3.8	0.003	0.51	0.0	0.04	19.26	0.00	2.612	5.81	2.89	3.3	96.7	0.0	1.38	0.20	0.68	0.80	1.00	6377	831	3	0	0	0	0	logfile
✔	8A05	15048	2025-02-10	2022-05-26	3.4	3.47	3.11	3.5	0.002	0.43	0.0	0.05	12.67	0.00	2.328	2.02	0.00	2.2	97.8	0.0	0.42	0.37	0.84	2.71	3.5	0.002	0.46	0.0	0.05	14.53	0.00	2.627	2.02	1.20	2.2	97.8	0.0	0.38	0.20	0.36	0.85	2.71	764	91	2	0	5	0	0	logfile
✔	7V0S	26949	2025-02-14	2022-05-10	2.5	2.21	2.53	2.3	0.004	0.73	0.0	0.05	16.39	0.00	2.208	5.09	2.55	1.7	98.2	0.1	1.73	0.70	0.88	4.46	2.3	0.005	0.67	0.0	0.05	16.34	0.00	2.569	5.77	1.98	2.0	98.0	0.0	1.90	0.20	0.70	0.89	4.40	10303	1315	10	0	3	178	0	logfile

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