Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8EZ3	28728	2025-02-11	2022-10-31	2.5	2.94	2.70	2.9	0.004	0.64	0.0	0.05	18.43	0.00	2.080	8.39	4.85	4.1	95.9	0.0	-0.81	0.50	0.86	4.53	2.9	0.008	0.68	0.0	0.05	16.36	0.00	2.530	7.66	3.92	5.7	94.3	0.0	-0.93	0.23	0.45	0.82	4.47	4894	622	5	0	9	0	0	logfile
✔	8CUi	27000	2025-02-13	2022-05-17	2.55	2.73	2.53	2.8	0.003	0.53	0.0	0.04	15.72	0.00	2.264	4.77	0.00	1.7	98.3	0.0	1.71	0.63	0.85	3.07	2.8	0.005	0.68	0.0	0.04	16.22	0.00	2.563	3.89	1.96	2.4	97.6	0.0	1.19	0.23	0.62	0.86	3.45	9357	1230	3	0	0	0	0	logfile
✔	8EZ7	28729	2025-02-11	2022-10-31	2.6	2.82	2.63	2.8	0.004	0.61	0.0	0.05	18.25	0.00	2.185	8.01	1.32	3.4	96.6	0.0	-0.10	0.51	0.85	3.91	2.8	0.004	0.64	0.0	0.05	15.63	0.00	2.450	7.38	3.20	4.2	95.8	0.0	-0.18	0.23	0.50	0.84	3.95	4927	624	5	0	9	0	0	logfile
✔	8GEC	29965	2025-02-11	2023-03-06	3.5	3.88	3.67	3.8	0.003	0.47	0.0	0.04	13.97	0.00	2.247	7.87	0.43	2.3	97.7	0.0	1.35	0.71	0.81	2.38	3.8	0.003	0.46	0.0	0.04	14.39	0.00	2.383	5.66	5.18	2.2	97.8	0.0	1.43	0.23	0.69	0.80	1.98	6125	891	5	0	1	0	0	logfile
✔	7ZZ0	15030	2025-02-11	2022-05-25	2.26	2.63	2.22	2.1	0.004	0.71	0.0	0.05	16.82	0.00	2.149	3.28	1.96	1.9	98.1	0.0	-0.34	0.92	0.91	4.41	2.1	0.003	0.54	0.0	0.04	16.73	0.00	2.077	3.39	2.40	1.9	98.1	0.0	1.44	0.23	0.92	0.91	4.43	4387	541	2	0	2	84	0	logfile
✔	7T4N	25681	2025-02-11	2021-12-10	2.35	2.66	2.38	2.5	0.002	0.42	0.0	0.04	16.22	0.00	2.207	4.39	1.25	1.0	99.0	0.0	0.87	0.63	0.85	3.82	2.5	0.003	0.50	0.0	0.04	16.44	0.00	2.547	4.01	1.25	1.1	98.9	0.0	1.55	0.23	0.66	0.87	3.54	6476	803	2	0	0	0	0	logfile
✔	8Y85	39034	2025-02-12	2024-02-05	2.73	2.89	2.74	3.0	0.004	0.76	4.0	0.04	16.59	0.01	2.314	3.19	0.68	2.5	97.5	0.0	2.04	0.59	0.78	2.03	3.0	0.003	0.57	0.0	0.04	16.88	0.01	2.615	2.35	1.94	2.5	97.5	0.0	2.43	0.23	0.59	0.78	1.83	8116	1028	4	0	4	0	0	logfile
✔	8V7Z	43011	2025-02-13	2023-12-04	3.4	2.66	3.42	3.5	0.002	0.58	0.0	0.04	19.31	0.00	2.004	11.77	0.41	4.8	95.2	0.0	-0.10	0.50	0.72	1.84	3.5	0.004	0.61	0.0	0.04	19.18	0.00	1.939	9.80	5.87	5.4	94.5	0.1	-0.08	0.23	0.50	0.72	1.83	8977	1104	2	0	10	0	0	logfile
✔	8Y6J	38988	2025-02-11	2024-02-02	3.46	3.69	3.47	3.7	0.003	0.55	0.0	0.04	16.14	0.00	2.181	6.75	0.00	3.3	96.7	0.0	3.00	0.58	0.79	1.79	3.7	0.003	0.52	0.0	0.04	16.71	0.00	2.567	6.38	3.07	4.3	95.7	0.0	3.49	0.23	0.57	0.79	1.51	6650	850	2	0	0	0	0	logfile
✔	8W4A	37264	2025-02-14	2023-08-23	2.69	2.93	2.74	3.0	0.006	0.57	0.0	0.04	14.93	0.00	2.212	5.31	0.00	1.3	98.7	0.0	1.30	0.64	0.87	4.21	3.0	0.003	0.51	0.0	0.04	15.44	0.00	2.546	4.37	0.87	1.3	98.7	0.0	2.23	0.24	0.68	0.88	3.68	9588	1066	8	0	86	0	0	logfile
✔	8GGP	40016	2025-02-10	2023-03-08	3.2	3.39	3.22	3.5	0.004	0.52	0.0	0.04	12.49	0.00	2.298	2.48	0.00	1.1	98.9	0.0	1.89	0.51	0.84	4.06	3.5	0.004	0.51	0.0	0.04	13.78	0.00	2.633	1.24	2.58	1.4	98.6	0.0	2.34	0.24	0.52	0.85	3.29	2075	280	2	0	1	0	0	logfile
✔	8JEJ	36190	2025-02-13	2023-05-16	2.5	2.72	2.51	2.8	0.030	1.34	0.0	0.49	18.65	0.01	2.165	7.23	2.60	4.3	95.7	0.0	0.11	0.69	0.88	5.00	2.8	0.003	1.09	0.0	0.06	17.88	0.01	1.806	6.10	2.14	4.3	95.6	0.1	0.70	0.24	0.69	0.88	4.87	8604	1089	5	0	6	0	0	logfile
✔	8JL1	36386	2025-02-13	2023-06-02	2.8	3.06	2.79	3.1	0.007	0.61	0.0	0.04	15.09	0.00	2.226	4.15	0.00	2.4	97.6	0.0	1.13	0.68	0.89	4.20	3.1	0.003	0.49	0.0	0.04	15.24	0.00	2.465	4.25	1.53	1.7	98.3	0.0	2.36	0.24	0.63	0.87	3.88	9384	1054	8	0	80	0	0	logfile
✔	8Y7Z	39027	2025-02-11	2024-02-05	2.57	2.82	2.60	2.9	0.004	0.66	0.0	0.04	20.76	0.00	1.958	14.35	0.33	3.7	96.3	0.0	-0.35	0.69	0.79	3.13	2.9	0.005	0.65	0.0	0.04	21.11	0.01	1.928	11.56	3.95	3.7	96.3	0.0	-0.22	0.24	0.65	0.80	3.25	6488	708	5	41	1	0	0	logfile
✔	8Y2D	38851	2025-02-11	2024-01-25	2.8	2.99	2.87	3.0	0.003	0.51	0.0	0.04	16.29	0.00	2.240	3.59	0.00	4.2	95.8	0.0	1.06	0.63	0.86	1.81	3.0	0.002	0.48	0.0	0.04	16.89	0.00	2.263	1.56	2.26	2.9	97.1	0.0	1.20	0.24	0.59	0.85	1.86	4189	528	2	0	4	4	0	logfile
✔	9iUP	60911	2025-02-11	2024-07-22	3.3	3.49	3.28	3.5	0.005	0.73	3.0	0.05	16.87	0.00	2.136	8.46	0.14	3.1	96.9	0.0	0.54	0.66	0.83	2.40	3.5	0.003	0.56	0.0	0.04	17.15	0.00	2.475	6.46	2.75	3.3	96.7	0.0	0.61	0.24	0.67	0.85	2.12	6420	787	3	0	2	0	0	logfile
✔	8XQJ	38579	2025-02-12	2024-01-05	2.95	2.21	3.02	2.0	0.003	0.57	0.0	0.04	14.51	0.00	2.244	10.26	0.00	4.3	95.7	0.0	0.73	0.78	0.78	2.69	2.0	0.003	0.62	0.0	0.04	14.84	0.00	2.607	9.46	2.45	4.0	96.0	0.0	1.00	0.24	0.77	0.79	2.49	6904	864	6	0	4	0	0	logfile
✔	8SNE	40624	2025-02-12	2023-04-27	3.0	3.23	3.07	3.3	0.008	0.74	0.0	0.05	17.69	0.00	2.108	5.84	0.63	4.7	95.2	0.1	0.12	0.62	0.80	2.80	3.3	0.003	0.57	0.0	0.04	17.28	0.00	2.152	4.92	3.01	4.7	95.2	0.1	0.53	0.24	0.60	0.81	2.62	6025	735	6	1	6	0	0	logfile
✔	8CV2	27006	2025-02-14	2022-05-17	2.44	2.61	2.44	2.8	0.003	0.53	0.0	0.04	14.13	0.00	2.281	3.79	0.00	1.6	98.4	0.0	1.88	0.64	0.85	1.65	2.8	0.003	0.52	0.0	0.04	14.93	0.00	2.255	4.33	1.85	0.9	99.1	0.0	2.87	0.24	0.61	0.84	1.62	9882	1299	6	0	6	0	0	logfile
✔	8GG6	29996	2025-02-11	2023-03-08	3.3	3.48	3.26	3.5	0.004	0.55	0.0	0.04	15.25	0.00	2.213	3.55	0.31	1.3	98.7	0.0	0.67	0.70	0.88	3.24	3.5	0.002	0.52	0.0	0.04	15.71	0.00	2.507	2.16	2.95	1.7	98.3	0.0	1.01	0.24	0.68	0.87	2.91	6725	904	6	0	2	4	0	logfile

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