Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8B3J	15830	2025-02-11	2022-09-16	3.1	3.34	3.18	3.3	0.005	0.63	0.0	0.05	15.71	0.00	2.144	7.52	0.00	7.6	92.4	0.0	-2.49	0.44	0.88	3.25	3.3	0.003	0.60	0.0	0.04	16.28	0.00	2.495	4.56	2.75	6.5	93.5	0.0	-2.18	0.27	0.43	0.87	2.87	5688	718	3	0	0	0	0	logfile
✔	7TRQ	26101	2025-02-13	2022-01-30	2.5	3.10	2.20	2.8	0.006	0.83	0.0	0.06	11.80	0.01	2.295	2.26	0.00	2.0	98.0	0.0	-0.50	0.75	0.89	4.72	2.8	0.003	0.61	0.0	0.04	14.53	0.00	2.316	6.10	1.18	1.7	98.3	0.0	1.31	0.98	0.77	0.91	4.26	8723	1129	6	0	2	0	0	logfile
✔	7SQH	25385	2025-02-12	2021-11-05	2.5	2.77	—	3.0	0.006	0.74	0.0	0.05	19.41	0.00	2.257	3.85	0.00	2.4	97.6	0.0	1.93	0.85	0.83	3.23	3.0	0.004	0.64	0.0	0.05	17.02	0.00	2.520	5.01	1.66	3.3	96.7	0.0	1.78	0.62	0.87	0.87	3.26	6954	849	9	0	12	21	0	logfile
✔	7JiC	22344	2025-02-11	2020-07-23	3.8	4.28	3.86	4.1	0.002	0.45	0.0	0.04	9.26	0.00	2.241	5.66	0.00	4.4	95.6	0.0	-1.97	0.68	0.80	2.30	4.1	0.003	0.66	0.0	0.04	13.87	0.00	2.555	7.78	1.91	3.0	96.9	0.1	0.42	1.99	0.68	0.81	2.57	5980	842	4	0	0	0	0	logfile
✔	7UKF	26579	2025-02-12	2022-04-01	3.02	3.32	3.06	3.3	0.004	0.61	0.0	0.04	11.50	0.00	2.290	9.17	0.00	2.3	97.7	0.0	1.20	0.58	0.83	3.02	3.3	0.004	0.55	0.0	0.04	14.34	0.00	2.548	6.69	1.18	2.7	97.3	0.0	2.28	0.28	0.58	0.84	2.80	8005	1036	5	0	5	0	0	logfile
✔	7UKD	26577	2025-02-12	2022-04-01	2.88	3.39	3.14	3.3	0.004	0.62	0.0	0.04	12.08	0.00	2.195	9.18	0.00	1.9	98.1	0.0	1.30	0.58	0.83	2.72	3.3	0.003	0.61	0.0	0.04	14.92	0.00	2.537	7.07	1.42	1.9	98.1	0.0	2.25	0.90	0.48	0.77	2.68	8000	1036	5	0	4	0	0	logfile
✔	8E1M	27825	2025-02-11	2022-08-10	2.9	3.48	2.86	3.2	0.007	0.77	0.0	0.04	14.84	0.00	2.179	7.34	0.00	2.7	97.3	0.0	-0.83	0.69	0.86	4.21	3.3	0.003	0.63	0.0	0.04	15.49	0.00	2.369	6.80	0.92	2.1	97.9	0.0	2.11	0.56	0.63	0.83	3.28	5691	760	7	0	2	0	0	logfile
✔	8YUT	39582	2025-02-12	2024-03-27	2.7	2.92	2.83	2.9	0.008	0.81	0.0	0.06	10.59	0.00	2.231	4.63	0.00	1.9	98.1	0.0	1.32	0.63	0.77	3.26	2.9	0.002	0.54	0.0	0.04	14.49	0.00	2.414	4.02	1.68	2.0	98.0	0.0	2.17	0.62	0.61	0.78	2.67	8229	1041	6	0	2	0	0	logfile
✔	7NXF	12638	2025-02-11	2021-03-18	3.1	4.01	3.17	3.6	0.006	0.82	0.0	0.04	14.20	0.01	2.281	9.15	0.00	7.9	92.1	0.0	-0.71	0.60	0.80	1.58	3.6	0.003	0.63	0.0	0.04	15.67	0.00	2.001	7.52	1.90	6.7	93.3	0.0	0.42	1.98	0.60	0.86	1.15	6405	829	2	0	3	0	0	logfile
✔	7TQD	26066	2025-02-13	2022-01-26	2.9	3.57	2.94	3.4	0.003	0.52	0.0	0.04	12.10	0.00	1.960	3.21	0.00	2.0	98.0	0.0	0.95	0.80	0.82	3.99	3.4	0.003	0.60	0.0	0.04	14.96	0.00	1.069	3.32	1.10	2.5	97.5	0.0	1.10	2.47	0.81	0.84	3.85	8690	1096	4	0	5	0	0	logfile
✔	7TRS	26102	2025-02-13	2022-01-30	2.8	3.39	2.61	3.1	0.006	0.78	0.0	0.05	12.25	0.01	2.243	4.02	0.00	1.9	98.1	0.0	-1.09	0.71	0.83	3.37	3.1	0.003	0.72	0.0	0.04	15.22	0.00	2.484	7.39	1.65	2.8	97.2	0.0	0.95	1.05	0.71	0.84	3.08	8571	1121	6	0	1	0	0	logfile
✔	7CN0	30412	2025-02-11	2020-07-29	3.9	3.96	—	3.9	0.004	0.62	0.0	0.04	13.32	0.00	1.843	14.90	0.00	8.1	91.9	0.0	-2.90	0.55	0.77	2.36	3.9	0.002	0.65	0.0	0.04	15.31	0.00	2.629	10.34	2.78	6.2	93.8	0.0	0.78	0.57	0.55	0.76	1.28	6602	884	5	0	2	0	0	logfile
✔	7Q4E	13804	2025-02-14	2021-10-30	3.63	3.95	3.60	3.8	0.008	0.99	0.0	0.06	19.12	0.01	1.857	5.12	0.00	2.5	97.5	0.0	-1.91	0.70	0.77	3.06	3.8	0.004	0.61	0.0	0.04	14.50	0.00	1.894	6.95	0.76	3.5	96.5	0.0	1.03	1.51	0.69	0.78	2.11	10049	608	9	0	29	0	4731	logfile
✔	8PM2	17756	2025-02-12	2023-06-28	2.92	2.98	2.94	3.3	0.006	0.78	0.0	0.05	13.03	0.01	2.132	4.04	0.00	2.4	97.6	0.0	0.56	0.74	0.80	3.49	3.3	0.004	0.64	0.0	0.04	16.00	0.00	2.468	6.90	3.12	3.0	97.0	0.0	1.36	0.54	0.74	0.84	3.00	7821	1009	6	0	2	0	0	logfile
✔	7URi	26713	2025-02-10	2022-04-22	2.6	2.67	2.95	2.6	0.009	1.37	0.0	0.12	30.06	0.01	2.201	7.31	0.00	0.0	0.0	0.0	—	0.05	0.34	—	2.7	0.007	1.37	0.0	0.06	28.71	0.01	2.201	19.50	0.00	0.0	0.0	0.0	—	2.07	0.08	0.38	—	1905	0	1	90	0	0	0	logfile
✔	7MDU	23780	2025-02-13	2021-04-06	3.3	3.35	3.19	3.3	0.023	1.76	2.0	0.14	10.79	0.01	2.302	1.10	0.00	2.1	97.9	0.0	0.65	0.51	0.86	4.32	3.3	0.005	0.67	0.0	0.04	13.64	0.00	2.448	5.50	2.73	3.5	96.5	0.0	0.01	0.72	0.51	0.88	3.26	8332	1018	17	0	33	0	0	logfile
✔	7FGF	31579	2025-02-14	2021-07-26	2.8	2.93	—	3.0	0.006	0.77	0.0	0.05	14.36	0.01	2.022	8.04	0.00	6.9	93.1	0.0	-1.60	0.68	0.86	4.69	3.0	0.005	0.68	0.0	0.05	17.10	0.00	2.486	7.22	1.96	7.1	92.9	0.0	-1.24	0.38	0.70	0.88	4.34	10143	1296	3	0	0	0	0	logfile
✔	6DZV	8940	2025-02-11	2018-07-05	4.2	4.78	4.79	4.8	0.013	0.70	0.0	0.08	12.11	0.01	2.088	3.69	0.00	3.8	96.2	0.0	-4.08	0.49	0.64	—	4.7	0.005	0.88	0.0	0.05	13.04	0.01	2.508	20.02	0.00	6.3	93.7	0.0	-1.15	1.52	0.54	0.72	—	6121	765	5	0	4	0	0	logfile
✔	8HMV	34903	2025-02-12	2022-12-05	2.91	3.27	3.06	3.2	0.005	0.63	0.0	0.04	13.38	0.00	2.150	4.96	0.00	3.3	96.7	0.0	-0.72	0.67	0.86	4.20	3.2	0.005	0.59	0.0	0.04	15.65	0.00	2.522	3.28	1.46	2.8	97.2	0.0	0.63	0.37	0.66	0.87	3.62	8127	1022	5	0	0	0	0	logfile
✔	5W81	8782	2025-02-14	2017-06-21	3.37	3.79	—	3.9	0.008	1.26	1.0	0.06	13.89	0.00	1.940	1.47	0.00	5.1	94.9	0.0	-3.11	0.45	0.60	0.57	3.8	0.004	0.73	0.0	0.04	17.25	0.00	1.896	7.42	2.57	3.1	96.8	0.1	0.20	1.53	0.58	0.82	1.24	9393	1173	2	0	4	0	0	logfile

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